Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000265.1

Orthogroup ID

OG0001445

Physical Location & Seq

Genomic Coordinates Forward (+)

264 .. 3120

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000265.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgggcgaaacaagggaagatgtctacgacgaagagctcgtcgattacgaagaggatgacgagaaggcccctgactccgctgctaaagtcaatggcgaatccgccaagaagggatatgttggaattcacagctcaggattcagagatttcctcttgaagccggagcttctacgtgctattgtggactcgggatttgagcatccctctgaagtacaacatgaatgcatcccacaagctattctgggaatggatgttatctgccaagctaaatctggaatggggaaaacagctgtatttgtcctgtctactttgcagcagattgaccctgtcgcgggccaagtttctgcacttattctttgccatactcgcgaattagcttaccagatttgccatgagtttgagagattcagtacctacttgccagatcttaaggttgctgtcttctatggtggtgtcactatcaaaaatcacaaagatttacttaaaaatgaatgcccccacattgttgttggaactcctggaagaatactagcacttgcaagagataaagacctctctttgaagaatgtgaggcattttatcctcgatgaatgtgacaagatgcttgagtcacttgacatgaggagagatgtgcaagagattttcaagatgacgccccatgataagcaagtaatgatgttctctgcaacactcagcaaagatatccgaccggtttgcaagaaatttatgcaagatcctatggaaatatatgttgatgacgaagccaagttgactcttcatggtctagtacagcactacatcaagctaaccgaggcagagaaaaatcgcaagctgaatgacctccttgatgcactggacttcaaccaggttgtcatcttcgtcaaaagtgtgagcagagctgcagagttgaacaagttactctcagagtgtaattttccctctatatgcatccattctggaatgaaccaagaagaaaggtatgtaaagtcatatctgattcttctatattttctcatcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

340

Amino Acids

38.7

Weight (kDa)

5.43

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11170 AT5G11170 AT5G11200 AT5G11200 AT5G11200
fragaria_vesca	FvH4_2g29210 FvH4_2g29210 FvH4_2g29210 FvH4_2g29210 FvH4_2g29210 FvH4_6g29970 FvH4_6g29970
malus_domestica	MD00G1022900.v1.1 MD08G1154600.v1.1 MD15G1124400.v1.1
prunus_persica	Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.1G479900_v2.0.a1 Prupe.3G084000_v2.0.a1 Prupe.3G084000_v2.0.a1
pyrus_communis	pycom08g12530 pycom09g14020 pycom15g11200 pycom17g21440
rosa_chinensis	RchiOBHm_Chr2g0135971 RchiOBHm_Chr6g0298081
rosa_laevigata	RLG00000011538 RLG00000019493
rosa_multiflora	Rmu_ssc0000265.1_g000001 Rmu_ssc0000343.1_g000026
rosa_roxburghii	Rroxscaffold_2G00108730 Rroxscaffold_7G00169960 Rroxscaffold_7G00211110
rosa_rugosa	Rorug02G0327200 Rorug06G0278300 Rorug06G0278400 Rorug06G0278500 Rorug06G0278600
rosa_samantha	Rh2AG379000 Rh2BG385500 Rh2CG364600 Rh2DG401800 Rh6AG388800 Rh6BG397000 Rh6CG403000 Rh6DG389500
rosa_wichuraiana	Rw2G030880 Rw6G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	24, 305
AccII	CGCG	2 cut(s)	332, 369
AciI	CCGC	3 cut(s)	78, 102, 332
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	123, 722
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	653
AfaI	GTAC	3 cut(s)	213, 412, 789
AfiI	CCNNNNNNNGG	2 cut(s)	331, 332
AflII	CTTAAG	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	709
AgsI	TTSAA	5 cut(s)	157, 562, 646, 862, 910
AjnI	CCWGG	2 cut(s)	517, 864
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	66, 334
ApeKI	GCWGC	3 cut(s)	80, 313, 899
ApoI	RAATTY	2 cut(s)	123, 722
ArsI	GACNNNNNNTTYG	4 cut(s)	24, 56, 176, 208
AsiGI	ACCGGT	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	67, 334
AvaI	CYCGRG	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	67, 325, 886
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	2 cut(s)	519, 866
BfaI	CTAG	2 cut(s)	530, 785
BfmI	CTRYAG	1 cut(s)	900
BfrI	CTTAAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	3 cut(s)	81, 314, 900
BlsI	GCNGC	3 cut(s)	82, 315, 901
Bme1390I	CCNGG	2 cut(s)	519, 866
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	67, 334
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	519, 866
BmsI	GCATC	5 cut(s)	208, 234, 591, 838, 957
BpiI	GAAGAC	1 cut(s)	433
BplI	GAGNNNNNCTC	4 cut(s)	135, 167, 188, 220
Bpu10I	CCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	810
BsaWI	WCCGGW	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 332
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	858
BseBI	CCWGG	2 cut(s)	519, 866
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	5 cut(s)	61, 199, 225, 256, 948
BseLI	CCNNNNNNNGG	2 cut(s)	331, 332
BseMII	CTCAG	3 cut(s)	147, 706, 936
BseNI	ACTGG	1 cut(s)	858
BseRI	GAGGAG	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	67, 325, 886
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	332, 369
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	2 cut(s)	68, 336
BshTI	ACCGGT	1 cut(s)	709
BsiEI	CGRYCG	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	161, 710
BslI	CCNNNNNNNGG	2 cut(s)	331, 332
BsmI	GAATGC	2 cut(s)	227, 497
BsnI	GGCC	2 cut(s)	68, 336
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	424, 733
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	3 cut(s)	78, 102, 332
BspANI	GGCC	2 cut(s)	68, 336
BspCNI	CTCAG	3 cut(s)	146, 705, 935
BspFNI	CGCG	2 cut(s)	332, 369
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	1 cut(s)	728
BspQI	GCTCTTC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	858
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	2 cut(s)	424, 733
BssNI	GRCGYC	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	519, 866
Bst6I	CTCTTC	3 cut(s)	27, 45, 780
BstACI	GRCGYC	1 cut(s)	653
BstAFI	CTTAAG	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	334, 830
BstDEI	CTNAG	3 cut(s)	133, 692, 922
BstF5I	GGATG	5 cut(s)	61, 199, 225, 256, 948
BstFNI	CGCG	2 cut(s)	332, 369
BstKTI	GATC	2 cut(s)	427, 736
BstMBI	GATC	2 cut(s)	424, 733
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	2 cut(s)	519, 866
BstSCI	CCNGG	2 cut(s)	517, 864
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	2 cut(s)	332, 369
BstV1I	GCAGC	3 cut(s)	67, 325, 886
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	424, 733
BstYI	RGATCY	2 cut(s)	424, 733
BsuRI	GGCC	2 cut(s)	68, 336
BtsCI	GGATG	5 cut(s)	61, 199, 225, 256, 948
BtsIMutI	CAGTG	1 cut(s)	851
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	334, 830
Cfr10I	RCCGGY	1 cut(s)	709
Cfr13I	GGNCC	2 cut(s)	67, 334
CseI	GACGC	1 cut(s)	661
CsiI	ACCWGGT	1 cut(s)	864
Csp6I	GTAC	3 cut(s)	212, 411, 788
CspAI	ACCGGT	1 cut(s)	709
CviAII	CATG	5 cut(s)	218, 392, 619, 659, 779
CviQI	GTAC	3 cut(s)	212, 411, 788
DdeI	CTNAG	3 cut(s)	133, 692, 922
DpnI	GATC	2 cut(s)	426, 735
DpnII	GATC	2 cut(s)	424, 733
Eam1104I	CTCTTC	3 cut(s)	27, 45, 780
EarI	CTCTTC	3 cut(s)	27, 45, 780
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	517, 864
EcoRV	GATATC	1 cut(s)	703
EcoT22I	ATGCAT	2 cut(s)	227, 950
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	5 cut(s)	221, 395, 622, 662, 782
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	5 cut(s)	217, 391, 618, 658, 778
FauI	CCCGC	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	24, 305
Fnu4HI	GCNGC	3 cut(s)	81, 314, 900
FokI	GGATG	5 cut(s)	68, 186, 212, 263, 935
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	81, 314, 900
FspBI	CTAG	2 cut(s)	530, 785
GluI	GCNGC	3 cut(s)	81, 314, 900
HaeIII	GGCC	2 cut(s)	68, 336
HapII	CCGG	2 cut(s)	161, 710
HgaI	GACGC	1 cut(s)	661
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	5 cut(s)	221, 395, 622, 662, 782
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	8 cut(s)	74, 98, 138, 185, 405, 608, 772, 997
HpaII	CCGG	2 cut(s)	161, 710
Hpy166II	GTNNAC	4 cut(s)	25, 184, 306, 771
Hpy188I	TCNGA	5 cut(s)	143, 208, 707, 925, 996
Hpy188III	TCNNGA	7 cut(s)	135, 154, 189, 273, 368, 646, 957
Hpy8I	GTNNAC	4 cut(s)	25, 184, 306, 771
Hpy99I	CGWCG	2 cut(s)	32, 44
HpyAV	CCTTC	2 cut(s)	58, 103
HpyCH4IV	ACGT	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	3 cut(s)	133, 692, 922
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	5 cut(s)	221, 395, 622, 662, 782
Kzo9I	GATC	2 cut(s)	424, 733
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	67, 325, 886
LweI	GCATC	5 cut(s)	208, 234, 591, 838, 957
MabI	ACCWGGT	1 cut(s)	864
MaeI	CTAG	2 cut(s)	530, 785
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	4 cut(s)	454, 593, 609, 915
MalI	GATC	2 cut(s)	426, 735
MboI	GATC	2 cut(s)	424, 733
MflI	RGATCY	2 cut(s)	424, 733
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	123, 371, 722, 931
MlyI	GAGTC	4 cut(s)	68, 179, 617, 766
MmeI	TCCRAC	3 cut(s)	100, 490, 730
Mph1103I	ATGCAT	2 cut(s)	227, 950
MseI	TTAA	2 cut(s)	429, 483
MspA1I	CMGCKG	2 cut(s)	80, 290
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	161, 710
MspR9I	CCNGG	2 cut(s)	519, 866
Mva1269I	GAATGC	2 cut(s)	227, 497
MvaI	CCWGG	2 cut(s)	519, 866
MvnI	CGCG	2 cut(s)	332, 369
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	2 cut(s)	424, 733
NlaIII	CATG	5 cut(s)	221, 395, 622, 662, 782
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	3 cut(s)	454, 593, 609
NruI	TCGCGA	1 cut(s)	369
NsiI	ATGCAT	2 cut(s)	227, 950
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 45
PctI	GAATGC	2 cut(s)	227, 497
PfeI	GAWTC	4 cut(s)	98, 138, 405, 997
PflFI	GACNNNGTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	709
PkrI	GCNGC	3 cut(s)	82, 315, 901
PleI	GAGTC	4 cut(s)	68, 179, 616, 766
PpsI	GAGTC	4 cut(s)	68, 179, 616, 766
Ppu21I	YACGTR	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	517, 864
PspGI	CCWGG	2 cut(s)	517, 864
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	67, 334
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	424, 733
PsyI	GACNNNGTC	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	290
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	3 cut(s)	213, 412, 789
RsaNI	GTAC	3 cut(s)	212, 411, 788
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	429, 483
SatI	GCNGC	3 cut(s)	81, 314, 900
Sau3AI	GATC	2 cut(s)	424, 733
Sau96I	GGNCC	2 cut(s)	67, 334
SchI	GAGTC	4 cut(s)	68, 179, 617, 766
ScrFI	CCNGG	2 cut(s)	519, 866
SduI	GDGCHC	1 cut(s)	39
SexAI	ACCWGGT	1 cut(s)	864
SfaNI	GCATC	5 cut(s)	208, 234, 591, 838, 957
SfcI	CTRYAG	1 cut(s)	900
SmlI	CTYRAG	2 cut(s)	428, 605
SmoI	CTYRAG	2 cut(s)	428, 605
Sse9I	AATT	4 cut(s)	123, 371, 722, 931
SsiI	CCGC	3 cut(s)	78, 102, 332
SspMI	CTAG	2 cut(s)	530, 785
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	517, 864
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	42, 585
TasI	AATT	4 cut(s)	123, 371, 722, 931
TatI	WGTACW	2 cut(s)	211, 787
TfiI	GAWTC	4 cut(s)	98, 138, 405, 997
Tru1I	TTAA	2 cut(s)	429, 483
Tru9I	TTAA	2 cut(s)	429, 483
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	3 cut(s)	454, 593, 609
TseI	GCWGC	3 cut(s)	80, 313, 899
Tsp45I	GTSAC	3 cut(s)	454, 593, 609
TspDTI	ATGAA	5 cut(s)	234, 504, 603, 767, 977
TspRI	CASTG	1 cut(s)	858
Tth111I	GACNNNGTC	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	123, 722
XcmI	CCANNNNNNNNNTGG	2 cut(s)	269, 506
XmiI	GTMKAC	2 cut(s)	24, 305
XspI	CTAG	2 cut(s)	530, 785
Zsp2I	ATGCAT	2 cut(s)	227, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.