Rh2DG401800

DEAD-box ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001445
Physical Location & Seq
Forward (+)
58538145 .. 58545595
7451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG401800.1

Sequence Viewer

Length: 1194 bp
ATGGGTGAAATCAGAGACAACGATGGGTACGAAGAAGAGCTCGTTGACTACGATGAGGAAGAACAAAACGCCCCCACCTCCGTCTCCGCCAAGCCCAATGGCGAATCCGCCAAAAAGGGCTATGTCGGCATCCATAGTTCGGGATTTAGAGACTTCCTGTTGAAACCAGAGCTGCTTCGGGCGATTGTGGATTCTGGATTCGAACATCCATCTGAAGTTCAACACGAGTGCATCCCTCAAGCTATTTTAGGAATGGATGTTCTTTGCCAAGCAAAATCTGGGATGGGCAAAACTGCAGTCTTTGTTCTGTCAACTCTTCAGCAAATAGATCCGGTTGCTGGTCAAGTTGCTGCTCTCATTCTATGCCACACAAGAGAATTGGCTTACCAGATTTGTCATGAATTTGAGAGATTCAGTACGTATTTGCCCGAGTTAAAAGTTGCGGTTTTCTATGGAGGTGTAACTATTAAGGTTCACAGAGATTTGCTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGGAGAGTGTTGGCTTTGGCAAGAGATAAAGACCTTGGATTAAAGAATGTGAGGCATTTTATTCTTGATGAATGCGACAAGATGCTCGAATCACTTGATATGAGGAGAGATGTGCAGGAGATCTTCAGGTTGACTCCTCATGACAAGCAAGTAATGATGTTTTCAGCAACGCTAAGCAAGGAAATCCGCCCTGTCTGCAAGAAATTTATGCAAGATCCGATGGAAATTTATGTAGATGATGAAGCCAAGTTGACTCTTCATGGTCTCGTTCAGCATTACATCAAATTGAGTGAATCTGAGAAGAACCGCAAGTTGACCGACCTTCTTGATGCGTTGGATTTCAATCAAGTTGTTATTTTTGTAAAAAGTGTGAGCAGAGCAGCTGAGTTGAACAAGTTACTGGCTGACTGTAATTTTCCCTCTATCTGCATTCATTCTGGAATGCCCCAGGAAGAAAGGTTGAAAAGGTACAAGAATTTCAAGGAGGGCCTTTCAAGAATTCTTGTGGCAACAGATTTAGTAGGGAGAGGAATTGACATTGAGCGTGTTAACATTGTTATCAACTATGACATGCCAGATTCTGCTGATACCTACCTACACAGGGTATTTGTTTTATTCTTTTTTAACTCACAATCTTTTACTTGCCACTCAGTGTCATTTTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006974 GO:0007275 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009555 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:1901360 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

397

Amino Acids

45.08

Weight (kDa)

5.65

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 72 - 237 3.8e-40 DEAD/DEAH box helicase
ResIII PF04851 87 - 234 2.8e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 276 - 377 1.6e-24 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 87, 108, 443, 712, 832
AclWI GGATC 2 cut(s) 323, 734
AcsI RAATTY 5 cut(s) 401, 728, 750, 1000, 1023
AcuI CTGAAG 3 cut(s) 234, 302, 634
AdeI CACNNNGTG 1 cut(s) 1177
AfaI GTAC 3 cut(s) 29, 418, 995
AfiI CCNNNNNNNGG 3 cut(s) 139, 338, 1126
AgsI TTSAA 7 cut(s) 163, 221, 868, 916, 988, 1006, 1020
AjnI CCWGG 2 cut(s) 523, 972
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 4 cut(s) 40, 172, 242, 908
AluI AGCT 4 cut(s) 40, 172, 242, 908
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 4 cut(s) 9, 88, 144, 794
AlwI GGATC 2 cut(s) 323, 734
AlwNI CAGNNNCTG 1 cut(s) 1106
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 1012
ApeKI GCWGC 3 cut(s) 172, 350, 905
ApoI RAATTY 5 cut(s) 401, 728, 750, 1000, 1023
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 1 cut(s) 1012
AsuHPI GGTGA 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 428
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 159, 337, 917
BccI CCATC 4 cut(s) 17, 217, 277, 739
BciT130I CCWGG 2 cut(s) 525, 974
BcoDI GTCTC 4 cut(s) 9, 88, 144, 794
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 1 cut(s) 645
BisI GCNGC 3 cut(s) 173, 351, 906
BlpI GCTNAGC 1 cut(s) 698
BlsI GCNGC 3 cut(s) 174, 352, 907
Bme1390I CCNGG 2 cut(s) 525, 974
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 1012
BmrFI CCNGG 2 cut(s) 525, 974
BmsI GCATC 4 cut(s) 138, 240, 597, 844
Bpu1102I GCTNAGC 1 cut(s) 698
Bpu14I TTCGAA 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 3 cut(s) 524, 559, 972
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 338, 1126
Bse1I ACTGG 1 cut(s) 930
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 525, 974
BseDI CCNNGG 3 cut(s) 524, 559, 972
BseGI GGATG 5 cut(s) 129, 205, 231, 262, 288
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 3 cut(s) 139, 338, 1126
BseMII CTCAG 3 cut(s) 813, 900, 1188
BseNI ACTGG 1 cut(s) 930
BseRI GAGGAG 2 cut(s) 643, 651
BseXI GCAGC 3 cut(s) 159, 337, 917
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 139, 338, 1126
BsmAI GTCTC 4 cut(s) 9, 88, 144, 794
BsmBI CGTCTC 1 cut(s) 88
BsmI GAATGC 4 cut(s) 503, 602, 954, 972
BsnI GGCC 1 cut(s) 1014
Bso31I GGTCTC 1 cut(s) 794
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 328, 645, 739
Bsp1720I GCTNAGC 1 cut(s) 698
BspACI CCGC 5 cut(s) 87, 108, 443, 712, 832
BspANI GGCC 1 cut(s) 1014
BspCNI CTCAG 3 cut(s) 814, 901, 1187
BspHI TCATGA 2 cut(s) 397, 664
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 2 cut(s) 323, 734
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 794
BsrI ACTGG 1 cut(s) 930
BssECI CCNNGG 3 cut(s) 524, 559, 972
BssMI GATC 3 cut(s) 328, 645, 739
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 525, 974
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 3 cut(s) 30, 321, 786
BstBAI YACGTR 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 698, 822, 909, 1174
BstF5I GGATG 5 cut(s) 129, 205, 231, 262, 288
BstKTI GATC 3 cut(s) 331, 648, 742
BstMAI GTCTC 4 cut(s) 9, 88, 144, 794
BstMBI GATC 3 cut(s) 328, 645, 739
BstMWI GCNNNNNNNGC 2 cut(s) 126, 720
BstNI CCWGG 2 cut(s) 525, 974
BstNSI RCATGY 1 cut(s) 1099
BstSCI CCNGG 2 cut(s) 523, 972
BstSFI CTRYAG 1 cut(s) 294
BstSNI TACGTA 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 159, 337, 917
BstX2I RGATCY 3 cut(s) 328, 645, 739
BstYI RGATCY 3 cut(s) 328, 645, 739
BsuRI GGCC 1 cut(s) 1014
BtsCI GGATG 5 cut(s) 129, 205, 231, 262, 288
BtsIMutI CAGTG 1 cut(s) 1182
CaiI CAGNNNCTG 1 cut(s) 1106
CciI TCATGA 2 cut(s) 397, 664
Cfr13I GGNCC 1 cut(s) 1012
Csp6I GTAC 3 cut(s) 28, 417, 994
CviAII CATG 4 cut(s) 398, 665, 785, 1096
CviQI GTAC 3 cut(s) 28, 417, 994
DdeI CTNAG 4 cut(s) 698, 822, 909, 1174
DpnI GATC 3 cut(s) 330, 647, 741
DpnII GATC 3 cut(s) 328, 645, 739
DraIII CACNNNGTG 1 cut(s) 1177
Eam1104I CTCTTC 3 cut(s) 30, 321, 786
EarI CTCTTC 3 cut(s) 30, 321, 786
EciI GGCGGA 3 cut(s) 76, 97, 701
Ecl136II GAGCTC 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 794
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 3 cut(s) 234, 302, 634
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 523, 972
EcoT14I CCWWGG 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 4 cut(s) 401, 668, 788, 1099
FatI CATG 4 cut(s) 397, 664, 784, 1095
Fnu4HI GCNGC 3 cut(s) 173, 351, 906
FokI GGATG 5 cut(s) 116, 192, 218, 269, 295
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 173, 351, 906
GluI GCNGC 3 cut(s) 173, 351, 906
HaeIII GGCC 1 cut(s) 1014
HapII CCGG 1 cut(s) 332
Hin1II CATG 4 cut(s) 401, 668, 788, 1099
HincII GTYRAC 6 cut(s) 46, 312, 657, 777, 840, 1075
HindII GTYRAC 6 cut(s) 46, 312, 657, 777, 840, 1075
HinfI GANTC 9 cut(s) 104, 191, 198, 411, 614, 658, 778, 818, 1103
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 7 cut(s) 46, 312, 475, 657, 777, 840, 1075
Hpy188I TCNGA 4 cut(s) 14, 214, 744, 823
Hpy188III TCNNGA 8 cut(s) 141, 195, 398, 590, 665, 851, 963, 1020
Hpy8I GTNNAC 7 cut(s) 46, 312, 475, 657, 777, 840, 1075
HpyAV CCTTC 1 cut(s) 857
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 6 cut(s) 231, 296, 640, 723, 736, 954
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 720
HpyF3I CTNAG 4 cut(s) 698, 822, 909, 1174
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 4 cut(s) 401, 668, 788, 1099
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 3 cut(s) 328, 645, 739
LguI GCTCTTC 1 cut(s) 30
Lsp1109I GCAGC 3 cut(s) 159, 337, 917
LweI GCATC 4 cut(s) 138, 240, 597, 844
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 460, 921
MalI GATC 3 cut(s) 330, 647, 741
MboI GATC 3 cut(s) 328, 645, 739
MboII GAAGA 8 cut(s) 44, 47, 71, 308, 640, 773, 838, 989
MflI RGATCY 3 cut(s) 328, 645, 739
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 9 cut(s) 377, 401, 728, 750, 809, 937, 1000, 1023, 1056
MlyI GAGTC 2 cut(s) 652, 772
MmeI TCCRAC 2 cut(s) 496, 840
MseI TTAA 5 cut(s) 434, 468, 566, 1074, 1149
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 525, 974
Mva1269I GAATGC 4 cut(s) 503, 602, 954, 972
MvaI CCWGG 2 cut(s) 525, 974
MwoI GCNNNNNNNGC 2 cut(s) 126, 720
NdeII GATC 3 cut(s) 328, 645, 739
NlaIII CATG 4 cut(s) 401, 668, 788, 1099
NspI RCATGY 1 cut(s) 1099
NspV TTCGAA 1 cut(s) 201
PagI TCATGA 2 cut(s) 397, 664
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 48
PctI GAATGC 4 cut(s) 503, 602, 954, 972
PfeI GAWTC 7 cut(s) 104, 191, 198, 411, 614, 818, 1103
PkrI GCNGC 3 cut(s) 174, 352, 907
PleI GAGTC 2 cut(s) 652, 772
PpsI GAGTC 2 cut(s) 652, 772
Ppu21I YACGTR 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 523, 972
PspGI CCWGG 2 cut(s) 523, 972
PspPI GGNCC 1 cut(s) 1012
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 3 cut(s) 328, 645, 739
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 3 cut(s) 29, 418, 995
RsaNI GTAC 3 cut(s) 28, 417, 994
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 5 cut(s) 434, 468, 566, 1074, 1149
SatI GCNGC 3 cut(s) 173, 351, 906
Sau3AI GATC 3 cut(s) 328, 645, 739
Sau96I GGNCC 1 cut(s) 1012
SchI GAGTC 2 cut(s) 652, 772
ScrFI CCNGG 2 cut(s) 525, 974
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 4 cut(s) 138, 240, 597, 844
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 9 cut(s) 377, 401, 728, 750, 809, 937, 1000, 1023, 1056
SsiI CCGC 5 cut(s) 87, 108, 443, 712, 832
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 523, 972
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 1 cut(s) 422
TaqI TCGA 2 cut(s) 201, 612
TaqII GACCGA 1 cut(s) 857
TasI AATT 9 cut(s) 377, 401, 728, 750, 809, 937, 1000, 1023, 1056
TfiI GAWTC 7 cut(s) 104, 191, 198, 411, 614, 818, 1103
Tru1I TTAA 5 cut(s) 434, 468, 566, 1074, 1149
Tru9I TTAA 5 cut(s) 434, 468, 566, 1074, 1149
TscAI CASTG 1 cut(s) 1182
TseI GCWGC 3 cut(s) 172, 350, 905
TspDTI ATGAA 6 cut(s) 414, 510, 609, 773, 780, 947
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 1182
XapI RAATTY 5 cut(s) 401, 728, 750, 1000, 1023
XceI RCATGY 1 cut(s) 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.