Rorug02G0327200

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
40113318 .. 40116659
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0327200.1

Sequence Viewer

Length: 1608 bp
ATGGCTGGACATCCATATTGTCGTCGATTTGCTAAAGAGGAAGCCTTACAAGTTAAACAAATGAGTAGAGCTGGCATAAAACCACATCAAATACTCTCTTCGCTTCGACAAAAGAATCTTGGTCTTCTAGCTATTTCCAGAAATATATATAGCAAGACAGCTCAGTTTAGGAGGGAGAGTCTAGGTGGCCATTCAATTATTCAAGCATTATTAGATGAGCTTGGTGATGCTGGTTTTTCTCATAATGTCAAATATGATCACTGTGGTCATTTGACTCATCTGTTCTTTGCTCATCCCACTTCCATTGAGTTGACTAAAAGCTACTCTAATGTCTTTGTGATGGATTGTACTTATAAGACAAATAAATACAAGATGCCATTACTTGAGATTGTAGGAGTGTCAAGCTTCAATAAATCATTTTATTCGTGTTTTGTTTTCATGCAGAAAGAGGAACAACAAGATTATCAGTGGGCTCTTGAAATGTTCAGTAAGTTATTGGGAGCTGATAATCATCCAGTGGCGATTATAACTGATAGGGAGTTGGCATTAATGAAGGCAATACAGGTTGTGTTTCCGATGACTCCTAATCTTTTATGCGTATGGCATATTGAAAAAAATATTCTTGCACATTGTAAGCGTCAGTTTAAGGAAGATGCATATTGGGTTTCTTTTATGTCTTCTTGGACTGCACTAGTAAAGTCTTTGGATGTGTCAATGTTCAATGAAGCTTGGAACTGTTTTCAAATTGAGTACAAAGACTATGCTTCAGTTTTGACTTACATTGGCAATACTTGGATTCCATGGAAAGAAAGGTTTGTATTTGCATGGACGGGACAGACTTCACATTTTGGTAATAATGTTACTTCTAGAGCAGAAGGTGCACATGGAACCTTAAAGAAATATCTTCAATTTTCTACTGGTGGTCTACGTGAAGTGAATGACAATATTTGTCTTGCTATTCAAAATCAGTTTCAGGAAATTAAAACTCAACTTGCAAGTGAAAAGATTCGTGTTCCTCAAAAGCTTTGCATCCCTTTCTTTAAAGAGGTGATTAATAAGGTATCTTTCCATGCTTTGTTTAAGTTACAAAAGCAATATTTGTTGGCAAATATGAAAGACTATTCATCTCAATGCAAGGGCCAATTTTCCAAAACCATGGGTCTCCCATGTGTGCACATGATTAAGGAGATGAACATTGAAGTGTTGCCTATAAATCTGATTCATAAGCAATGGAGGATTGACACAAGATCTTTCGGTAATGATCATCATGCAAGCTTGGATCATGAAGATCCATTTAGTAGTCTTATATCTGAGATTAAAGAGAAGTATGAAAAACAGCCATTTATGCAAAAAGAAAACAGCATAAGACAGCTTTCTCAGATTCTTGGTGCATCTTGTCCTTTAATTTTTGAGCCTACTCTTCAACCTCACAAAGGTCGTCCGGTAGGATCAAATAAAAGAAAGGAAACTAGCTCTACAAAGCGGGAACCTTCATATTTTGAGGTAGTGGAGAAGGCACCTCGAAAATGTAGGGGCTGCGGCAAGATCGGCCATTATCGTAACAAATGTCCATCACTAGGAGAGCCTACTTTACTAGGAACACAGTGA

Protein Analysis

535

Amino Acids

61.56

Weight (kDa)

9.2

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 82 - 194 3e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 111 - 206 4.1e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 527
AccB1I GGYRCC 1 cut(s) 1516
AccI GTMKAC 1 cut(s) 925
AciI CCGC 2 cut(s) 1483, 1539
AclWI GGATC 3 cut(s) 1283, 1287, 1456
AcoI YGGCCR 2 cut(s) 187, 1549
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 2 cut(s) 349, 752
AfiI CCNNNNNNNGG 2 cut(s) 1433, 1577
AhlI ACTAGT 1 cut(s) 691
Alw21I GWGCWC 2 cut(s) 883, 1176
Alw26I GTCTC 1 cut(s) 1166
Alw44I GTGCAC 2 cut(s) 879, 1172
AlwI GGATC 3 cut(s) 1283, 1287, 1456
AoxI GGCC 3 cut(s) 187, 1138, 1549
ApaLI GTGCAC 2 cut(s) 879, 1172
ApeKI GCWGC 1 cut(s) 1536
AseI ATTAAT 2 cut(s) 548, 1053
Asp700I GAANNNNTTC 1 cut(s) 1005
AspS9I GGNCC 1 cut(s) 1138
AsuHPI GGTGA 2 cut(s) 236, 1060
BaeGI GKGCMC 2 cut(s) 883, 1176
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 1516
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 116, 669
Bbv12I GWGCWC 2 cut(s) 883, 1176
BbvI GCAGC 1 cut(s) 1523
BccI CCATC 2 cut(s) 334, 1579
BclI TGATCA 2 cut(s) 256, 1261
BcoDI GTCTC 1 cut(s) 1166
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 7 cut(s) 128, 182, 692, 867, 1470, 1577, 1595
BglII AGATCT 1 cut(s) 1247
BisI GCNGC 2 cut(s) 1537, 1540
BlsI GCNGC 2 cut(s) 1538, 1541
BmgT120I GGNCC 1 cut(s) 1138
BmiI GGNNCC 3 cut(s) 889, 1488, 1518
BmsI GCATC 5 cut(s) 217, 363, 643, 1038, 1400
BpiI GAAGAC 2 cut(s) 116, 669
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 929
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 800, 1155
BsaWI WCCGGW 1 cut(s) 1441
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 1433, 1577
Bse1I ACTGG 2 cut(s) 515, 922
Bse3DI GCAATG 1 cut(s) 1235
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 800, 1155
BseGI GGATG 5 cut(s) 10, 292, 511, 712, 1029
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 1433, 1577
BseMI GCAATG 1 cut(s) 1235
BseMII CTCAG 3 cut(s) 176, 1302, 1391
BseNI ACTGG 2 cut(s) 515, 922
BseSI GKGCMC 2 cut(s) 883, 1176
BseXI GCAGC 1 cut(s) 1523
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 3 cut(s) 189, 1140, 1551
BshNI GGYRCC 1 cut(s) 1516
BsiHKAI GWGCWC 2 cut(s) 883, 1176
BsiSI CCGG 1 cut(s) 1442
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 2 cut(s) 1433, 1577
BsmAI GTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 3 cut(s) 189, 1140, 1551
Bso31I GGTCTC 1 cut(s) 1166
Bsp1286I GDGCHC 3 cut(s) 475, 883, 1176
Bsp143I GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
Bsp19I CCATGG 2 cut(s) 800, 1155
BspACI CCGC 2 cut(s) 1483, 1539
BspANI GGCC 3 cut(s) 189, 1140, 1551
BspCNI CTCAG 3 cut(s) 175, 1303, 1390
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 3 cut(s) 889, 1488, 1518
BspPI GGATC 3 cut(s) 1283, 1287, 1456
BspT107I GGYRCC 1 cut(s) 1516
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 1235
BsrI ACTGG 2 cut(s) 515, 922
BssECI CCNNGG 2 cut(s) 800, 1155
BssMI GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
BssT1I CCWWGG 2 cut(s) 800, 1155
Bst4CI ACNGT 3 cut(s) 263, 737, 1605
Bst6I CTCTTC 2 cut(s) 103, 1425
BstAPI GCANNNNNTGC 1 cut(s) 878
BstBAI YACGTR 1 cut(s) 929
BstC8I GCNNGC 2 cut(s) 73, 1273
BstDEI CTNAG 3 cut(s) 162, 1311, 1377
BstDSI CCRYGG 2 cut(s) 800, 1155
BstENI CCTNNNNNAGG 1 cut(s) 1431
BstF5I GGATG 5 cut(s) 10, 292, 511, 712, 1029
BstKTI GATC 7 cut(s) 259, 1250, 1264, 1282, 1291, 1451, 1548
BstMAI GTCTC 1 cut(s) 1166
BstMBI GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
BstMWI GCNNNNNNNGC 3 cut(s) 878, 1345, 1548
BstSLI GKGCMC 2 cut(s) 883, 1176
BstV1I GCAGC 1 cut(s) 1523
BstV2I GAAGAC 2 cut(s) 116, 669
BstX2I RGATCY 2 cut(s) 1247, 1288
BstXI CCANNNNNNTGG 1 cut(s) 1156
BstYI RGATCY 2 cut(s) 1247, 1288
BsuRI GGCC 3 cut(s) 189, 1140, 1551
BtgI CCRYGG 2 cut(s) 800, 1155
BtsCI GGATG 5 cut(s) 10, 292, 511, 712, 1029
BtsIMutI CAGTG 3 cut(s) 259, 473, 522
Cac8I GCNNGC 2 cut(s) 73, 1273
CciI TCATGA 1 cut(s) 1282
Cfr13I GGNCC 1 cut(s) 1138
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 348, 751
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviQI GTAC 2 cut(s) 348, 751
DdeI CTNAG 3 cut(s) 162, 1311, 1377
DpnI GATC 7 cut(s) 258, 1249, 1263, 1281, 1290, 1450, 1547
DpnII GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
DraI TTTAAA 1 cut(s) 1042
EaeI YGGCCR 2 cut(s) 187, 1549
Eam1104I CTCTTC 2 cut(s) 103, 1425
EarI CTCTTC 2 cut(s) 103, 1425
Eco130I CCWWGG 2 cut(s) 800, 1155
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 1 cut(s) 1166
Eco57I CTGAAG 1 cut(s) 750
EcoNI CCTNNNNNAGG 1 cut(s) 1431
EcoT14I CCWWGG 2 cut(s) 800, 1155
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 800, 1155
FaqI GGGAC 1 cut(s) 846
FauI CCCGC 1 cut(s) 1476
FbaI TGATCA 2 cut(s) 256, 1261
FblI GTMKAC 1 cut(s) 925
Fnu4HI GCNGC 2 cut(s) 1537, 1540
FokI GGATG 4 cut(s) 279, 498, 719, 1016
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 1537, 1540
FspBI CTAG 7 cut(s) 128, 182, 692, 867, 1470, 1577, 1595
GluI GCNGC 2 cut(s) 1537, 1540
HaeIII GGCC 3 cut(s) 189, 1140, 1551
HapII CCGG 1 cut(s) 1442
HgaI GACGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 4 cut(s) 403, 726, 1022, 1273
HinfI GANTC 8 cut(s) 115, 178, 274, 580, 796, 1006, 1219, 1381
HpaII CCGG 1 cut(s) 1442
HphI GGTGA 2 cut(s) 236, 1060
Hpy166II GTNNAC 4 cut(s) 312, 881, 926, 1174
Hpy188I TCNGA 4 cut(s) 576, 1218, 1312, 1380
Hpy188III TCNNGA 5 cut(s) 138, 476, 867, 974, 1283
Hpy8I GTNNAC 4 cut(s) 312, 881, 926, 1174
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 547, 869, 1500, 1507
HpyCH4III ACNGT 3 cut(s) 263, 737, 1605
HpyCH4IV ACGT 1 cut(s) 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 878, 1345, 1548
HpyF3I CTNAG 3 cut(s) 162, 1311, 1377
HpySE526I ACGT 1 cut(s) 928
Ksp22I TGATCA 2 cut(s) 256, 1261
Kzo9I GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
LmnI GCTCC 1 cut(s) 500
LpnPI CCDG 8 cut(s) 57, 151, 216, 528, 548, 903, 959, 1455
Lsp1109I GCAGC 1 cut(s) 1523
LweI GCATC 5 cut(s) 217, 363, 643, 1038, 1400
MaeI CTAG 7 cut(s) 128, 182, 692, 867, 1470, 1577, 1595
MaeII ACGT 1 cut(s) 928
MaeIII GTNAC 3 cut(s) 859, 1083, 1559
MalI GATC 7 cut(s) 258, 1249, 1263, 1281, 1290, 1450, 1547
MboI GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
MboII GAAGA 7 cut(s) 90, 116, 662, 669, 896, 1298, 1412
MflI RGATCY 2 cut(s) 1247, 1288
MhlI GDGCHC 3 cut(s) 475, 883, 1176
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 6 cut(s) 195, 744, 908, 978, 1142, 1404
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 3 cut(s) 187, 268, 574
MnlI CCTC 9 cut(s) 31, 165, 442, 1026, 1039, 1227, 1437, 1495, 1530
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 1005
MscI TGGCCA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 1129, 1199
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 1 cut(s) 1442
MwoI GCNNNNNNNGC 3 cut(s) 878, 1345, 1548
NcoI CCATGG 2 cut(s) 800, 1155
NdeII GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
NlaIV GGNNCC 3 cut(s) 889, 1488, 1518
NsiI ATGCAT 1 cut(s) 658
PagI TCATGA 1 cut(s) 1282
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 5 cut(s) 115, 796, 1006, 1219, 1381
PkrI GCNGC 2 cut(s) 1538, 1541
PleI GAGTC 3 cut(s) 186, 268, 574
PpsI GAGTC 3 cut(s) 186, 268, 574
Ppu21I YACGTR 1 cut(s) 929
PshBI ATTAAT 2 cut(s) 548, 1053
PsiI TTATAA 2 cut(s) 354, 527
PspN4I GGNNCC 3 cut(s) 889, 1488, 1518
PspPI GGNCC 1 cut(s) 1138
PsuI RGATCY 2 cut(s) 1247, 1288
RsaI GTAC 2 cut(s) 349, 752
RsaNI GTAC 2 cut(s) 348, 751
RseI CAYNNNNRTG 2 cut(s) 1129, 1199
SatI GCNGC 2 cut(s) 1537, 1540
Sau3AI GATC 7 cut(s) 256, 1247, 1261, 1279, 1288, 1448, 1545
Sau96I GGNCC 1 cut(s) 1138
SchI GAGTC 3 cut(s) 187, 268, 574
SduI GDGCHC 3 cut(s) 475, 883, 1176
SfaNI GCATC 5 cut(s) 217, 363, 643, 1038, 1400
SmiMI CAYNNNNRTG 2 cut(s) 1129, 1199
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 691
Sse9I AATT 6 cut(s) 195, 744, 908, 978, 1142, 1404
SsiI CCGC 2 cut(s) 1483, 1539
SspI AATATT 3 cut(s) 619, 946, 1097
SspMI CTAG 7 cut(s) 128, 182, 692, 867, 1470, 1577, 1595
StyI CCWWGG 2 cut(s) 800, 1155
TaaI ACNGT 3 cut(s) 263, 737, 1605
TaiI ACGT 1 cut(s) 931
TaqI TCGA 3 cut(s) 25, 106, 1522
TasI AATT 6 cut(s) 195, 744, 908, 978, 1142, 1404
TatI WGTACW 2 cut(s) 347, 750
TauI GCSGC 1 cut(s) 1542
TfiI GAWTC 5 cut(s) 115, 796, 1006, 1219, 1381
TscAI CASTG 3 cut(s) 266, 473, 522
TseI GCWGC 1 cut(s) 1536
TspRI CASTG 3 cut(s) 266, 473, 522
VneI GTGCAC 2 cut(s) 879, 1172
VspI ATTAAT 2 cut(s) 548, 1053
XagI CCTNNNNNAGG 1 cut(s) 1431
XbaI TCTAGA 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 7 cut(s) 128, 182, 692, 867, 1470, 1577, 1595
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.