Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

5686135 .. 5689947

Gene Structure 3813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGAAGGAAGCGGTCAAGTATGTATGGGAAGGAGCAATTCCTCTGCAGATTCATCTCCACAAATCCGACGTCGCTTCTCACCCTGCTCCTCCTCCTGCTCTTGTGTTAGCACCAAGAATAGGATATTTGCCTCTGTTGATTCCTCTTATAAAGCCTTATTTCAAGGATTCACTTCCTCCTGGTGAAGATTCAATTTGGTTTGATTACAAAGGATTTCCTCTAAAATGGTATATACCAACAGGTGTTCTTTTCGATCTCCTTTGTGCAGAACCCGAAAGACCATGGAATCTCACGATACACTTTAGAGGATATCCTTGCAACATACTGATACCATGTGAAGGAGAAGATTCTGTAAAATGGAACTTTGTTAATTCTTTGAAAGAGGCACAATATATCATCAATGGAAATTGCAAGAATGTTATGAACATGTCTCAGAGTGATCAAGAGGATCTATGGACCTCTGTCATGAACGGTGATCTTGATGCCTATACAAGATTATCACCCAAGCTTAAAATGGGAACAGTCGAAGATGAGTTTTCAAGGAAAACAAGTTTGTCATCTCCACAATCTCAACAAGTTGTGCCTGAGACGGAGGTGGCTGGACAAGTTAAGACAGCAAGAATTCCTGTTCGGTTGTATGTTCGAAGTCTAAATAAAGATTTCGAGAATCTTGAAGATGTACCGGAGATCGATACCTGGGATGACATCTCGTACCTTAATCGCCCTGTTGAGTTCCTCAAAGAAGAAGGGAAATGCTTTACGTTACGTGACGCCATTAAAAGTCTCCTCCCTGAGTTTATGGGAGACAGAGCGCAAACGAGTGGTGAAGAAAGAAGCATAGATGATACAGAAGAAGCAGATGGGTCGAGGGAGATGGGTGAAATCAAATTGGTAAGGATACAAGGGATAGAAATGAAGCTAGAGATACCGTTTTCGTGGGTGGTAAATAACTTGATGAACCCAGAATTCTATCTCCATATCTCTGTCCTTGTGAAAGCTCCTCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

337

Amino Acids

38.48

Weight (kDa)

4.95

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 102	7.5e-30	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	116 - 172	4.5e-23	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	208 - 330	3.3e-18	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AatII	GACGTC	1 cut(s)	75
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	2 cut(s)	624, 968
AcyI	GRCGYC	2 cut(s)	72, 774
AfaI	GTAC	2 cut(s)	684, 716
AfiI	CCNNNNNNNGG	2 cut(s)	122, 341
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	5 cut(s)	166, 195, 382, 543, 677
AjnI	CCWGG	2 cut(s)	181, 698
AluBI	AGCT	3 cut(s)	511, 922, 1001
AluI	AGCT	3 cut(s)	511, 922, 1001
Alw26I	GTCTC	4 cut(s)	438, 584, 791, 801
AlwI	GGATC	1 cut(s)	459
ApoI	RAATTY	2 cut(s)	624, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	6 cut(s)	74, 197, 488, 495, 839, 893
AsuII	TTCGAA	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	459
BccI	CCATC	2 cut(s)	857, 871
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BciT130I	CCWGG	2 cut(s)	183, 700
BciVI	GTATCC	1 cut(s)	894
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	4 cut(s)	438, 584, 791, 801
BfaI	CTAG	1 cut(s)	923
BfmI	CTRYAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	894
Bme1390I	CCNGG	2 cut(s)	183, 700
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	183, 700
BmsI	GCATC	1 cut(s)	475
BoxI	GACNNNNGTC	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	646
Bsa29I	ATCGAT	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	770
BsaHI	GRCGYC	2 cut(s)	72, 774
BsaJI	CCNNGG	2 cut(s)	284, 699
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 341
BseBI	CCWGG	2 cut(s)	183, 700
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	284, 699
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	122, 341
BseMII	CTCAG	3 cut(s)	449, 579, 786
BseRI	GAGGAG	4 cut(s)	81, 84, 779, 993
BsgI	GTGCAG	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	122, 341
BsmAI	GTCTC	4 cut(s)	438, 584, 791, 801
BsmBI	CGTCTC	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	256, 442, 451, 478, 690
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	3 cut(s)	448, 580, 787
BspDI	ATCGAT	1 cut(s)	693
BspHI	TCATGA	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	284, 699
BssMI	GATC	5 cut(s)	256, 442, 451, 478, 690
BssNI	GRCGYC	2 cut(s)	72, 774
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	183, 700
Bst4CI	ACNGT	3 cut(s)	476, 526, 933
BstACI	GRCGYC	2 cut(s)	72, 774
BstBAI	YACGTR	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	3 cut(s)	435, 588, 795
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	5 cut(s)	259, 445, 454, 481, 693
BstMAI	GTCTC	4 cut(s)	438, 584, 791, 801
BstMBI	GATC	5 cut(s)	256, 442, 451, 478, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	183, 700
BstNSI	RCATGY	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	181, 698
BstSFI	CTRYAG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	894
BsuTUI	ATCGAT	1 cut(s)	693
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	709
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	459
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	683, 715
CviAII	CATG	4 cut(s)	285, 336, 430, 469
CviJI	RGCY	5 cut(s)	157, 511, 602, 922, 1001
CviKI_1	RGCY	5 cut(s)	157, 511, 602, 922, 1001
CviQI	GTAC	2 cut(s)	683, 715
DdeI	CTNAG	3 cut(s)	435, 588, 795
DpnI	GATC	5 cut(s)	258, 444, 453, 480, 692
DpnII	GATC	5 cut(s)	256, 442, 451, 478, 690
Eco130I	CCWWGG	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	459
EcoRI	GAATTC	2 cut(s)	624, 968
EcoRII	CCWGG	2 cut(s)	181, 698
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	4 cut(s)	288, 339, 433, 472
FatI	CATG	4 cut(s)	284, 335, 429, 468
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	1 cut(s)	716
FspBI	CTAG	1 cut(s)	923
GlaI	GCGC	1 cut(s)	816
HapII	CCGG	1 cut(s)	686
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	2 cut(s)	72, 774
Hin1II	CATG	4 cut(s)	288, 339, 433, 472
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	7 cut(s)	52, 142, 170, 191, 289, 350, 670
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	6 cut(s)	74, 197, 488, 495, 839, 893
Hpy188I	TCNGA	2 cut(s)	70, 438
Hpy188III	TCNNGA	6 cut(s)	295, 446, 469, 482, 667, 674
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	3 cut(s)	26, 335, 743
HpyCH4III	ACNGT	3 cut(s)	476, 526, 933
HpyCH4IV	ACGT	3 cut(s)	72, 764, 769
HpyCH4V	TGCA	4 cut(s)	49, 269, 321, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	435, 588, 795
HpySE526I	ACGT	3 cut(s)	72, 764, 769
Hsp92I	GRCGYC	2 cut(s)	72, 774
Hsp92II	CATG	4 cut(s)	288, 339, 433, 472
HspAI	GCGC	1 cut(s)	815
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	256, 442, 451, 478, 690
LmnI	GCTCC	3 cut(s)	35, 94, 1006
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	923
MaeII	ACGT	3 cut(s)	72, 764, 769
MaeIII	GTNAC	2 cut(s)	765, 770
MalI	GATC	5 cut(s)	258, 444, 453, 480, 692
MboI	GATC	5 cut(s)	256, 442, 451, 478, 690
MboII	GAAGA	7 cut(s)	200, 359, 542, 689, 758, 842, 866
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	7 cut(s)	39, 195, 373, 409, 624, 890, 968
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	5 cut(s)	372, 513, 612, 720, 780
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	183, 700
MvaI	CCWGG	2 cut(s)	183, 700
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	5 cut(s)	256, 442, 451, 478, 690
NlaIII	CATG	4 cut(s)	288, 339, 433, 472
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	646
PagI	TCATGA	1 cut(s)	468
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	7 cut(s)	52, 142, 170, 191, 289, 350, 670
Ppu21I	YACGTR	1 cut(s)	770
PscI	ACATGT	1 cut(s)	429
PshAI	GACNNNNGTC	1 cut(s)	464
PsiI	TTATAA	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	181, 698
PspGI	CCWGG	2 cut(s)	181, 698
PspPI	GGNCC	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	2 cut(s)	684, 716
RsaNI	GTAC	2 cut(s)	683, 715
SaqAI	TTAA	5 cut(s)	372, 513, 612, 720, 780
Sau3AI	GATC	5 cut(s)	256, 442, 451, 478, 690
Sau96I	GGNCC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	183, 700
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	47
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	1 cut(s)	459
Sse9I	AATT	7 cut(s)	39, 195, 373, 409, 624, 890, 968
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	923
StyD4I	CCNGG	2 cut(s)	181, 698
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	476, 526, 933
TaiI	ACGT	3 cut(s)	75, 767, 772
TaqI	TCGA	6 cut(s)	255, 528, 646, 666, 693, 869
TasI	AATT	7 cut(s)	39, 195, 373, 409, 624, 890, 968
TfiI	GAWTC	7 cut(s)	52, 142, 170, 191, 289, 350, 670
Tru1I	TTAA	5 cut(s)	372, 513, 612, 720, 780
Tru9I	TTAA	5 cut(s)	372, 513, 612, 720, 780
TseFI	GTSAC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	5 cut(s)	44, 440, 485, 932, 974
TspGWI	ACGGA	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	624, 968
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	1 cut(s)	923
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.