Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

86731679 .. 86731972

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG545000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTACAGATTCATCTCCACGAATCCGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCGTGATCTTAGCTCCTCGGCTAGGATACCTACCATTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAGAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAACCGGAGAGACTTGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

97

Amino Acids

10.92

Weight (kDa)

5.15

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 92	4.8e-25	Autophagy protein ATG5, UblA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	122, 228
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 228
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	122, 228
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	122, 228
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	105, 256
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	2 cut(s)	105, 256
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	108, 259
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	105, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	5 cut(s)	113, 121, 143, 157, 216
CviKI_1	RGCY	5 cut(s)	113, 121, 143, 157, 216
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	2 cut(s)	107, 258
DpnII	GATC	2 cut(s)	105, 256
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	10
FaiI	YATR	5 cut(s)	8, 28, 234, 236, 265
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	52, 65
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	173, 190
Hpy188I	TCNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	173, 190
HpyAV	CCTTC	2 cut(s)	26, 96
HpyCH4V	TGCA	2 cut(s)	173, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	105, 256
LmnI	GCTCC	2 cut(s)	35, 118
LpnPI	CCDG	4 cut(s)	168, 195, 228, 288
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	107, 258
MboI	GATC	2 cut(s)	105, 256
MboII	GAAGA	2 cut(s)	74, 251
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	39, 288
MnlI	CCTC	5 cut(s)	12, 126, 154, 189, 206
MseI	TTAA	2 cut(s)	152, 292
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	105, 256
NlaIII	CATG	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	52, 65
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	152, 292
Sau3AI	GATC	2 cut(s)	105, 256
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	3 cut(s)	23, 115, 132
Sse9I	AATT	2 cut(s)	39, 288
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	181
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	39, 288
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	52, 65
Tru1I	TTAA	2 cut(s)	152, 292
Tru9I	TTAA	2 cut(s)	152, 292
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	288
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.