Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

3419673 .. 3420593

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTACAGATTCATCTCCACGAATCCGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTACCATTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAGAGGCTTGCCCTTGAAATGGTATGTACCAACAGGAGTTCTTTTTGATCTTCTATGTGGAGAACGGGAGAGACCTTGGAATCTAACGGCGCATCTTAGGAGATATCCAGCAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAGCTTTATCAACTCATTGAAAGAGGCAGCATATATAATCAATGGAAACTACAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCTACGGGTATCTTCTAAACTTAAGCTTGGAGCATTTGGGGAAATGAACTCAAGCTGTCCAAGATCCCGATCGAGTATGGGTGAAATTGATGTTTCTGGGCAGGTGAAGCAAGGCCGAGTTCCTGTTCGGTTATATGTTTGGTATGTCATTGAGGACTTTGATGACTTGGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTTTTACATAAACCAGCCTGTCGAGATACAAGGAGAAGGTAGATGCTTTACTTTACATGATGCAGTGAAAAGCCTTCTGCCAGACTATTTTGTGGAGAAATTCTTGGGCACTGCTGAATCATTGACAGTAGGTGGTGATGACAAGCAAAGAGTTTCATCCGAAGATGCAAGCGATGATAAAAAAGCCGAAGAGGAAGTAGAAACTAATGGGCCAGTCCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

306

Amino Acids

34.55

Weight (kDa)

4.82

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 101	6.5e-28	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	116 - 172	1.8e-22	Autophagy protein ATG5, alpha-helical bundle region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	325, 549
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	2 cut(s)	209, 237
AfiI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	226, 382
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	113, 366, 454, 517, 546
AluI	AGCT	5 cut(s)	113, 366, 454, 517, 546
Alw21I	GWGCWC	2 cut(s)	175, 456
Alw26I	GTCTC	2 cut(s)	274, 438
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	325, 549
AoxI	GGCC	3 cut(s)	141, 604, 905
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	794
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	2 cut(s)	301, 462
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	5 cut(s)	67, 356, 584, 607, 842
BaeGI	GKGCMC	2 cut(s)	175, 806
BanII	GRGCYC	1 cut(s)	456
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
Bbv12I	GWGCWC	2 cut(s)	175, 456
BbvI	GCAGC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	274, 438
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	5 cut(s)	310, 655, 728, 745, 850
BpuEI	CTTGAG	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	116, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
Bse1I	ACTGG	1 cut(s)	908
Bse8I	GATNNNNATC	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	116, 284
BseGI	GGATG	1 cut(s)	851
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
BseNI	ACTGG	1 cut(s)	908
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	175, 806
BseXI	GCAGC	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	143, 606, 907
BsiEI	CGRYCG	1 cut(s)	563
BsiHKAI	GWGCWC	2 cut(s)	175, 456
BslFI	GGGAC	2 cut(s)	701, 896
BslI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
BsmAI	GTCTC	2 cut(s)	274, 438
BsmFI	GGGAC	2 cut(s)	701, 896
BsnI	GGCC	3 cut(s)	143, 606, 907
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	3 cut(s)	175, 456, 806
Bsp143I	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	143, 606, 907
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	325, 549
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	908
BssECI	CCNNGG	2 cut(s)	116, 284
BssMI	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	2 cut(s)	87, 879
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	218, 865
BstDEI	CTNAG	2 cut(s)	109, 305
BstENI	CCTNNNNNAGG	2 cut(s)	120, 339
BstF5I	GGATG	1 cut(s)	851
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	301, 462
BstKTI	GATC	6 cut(s)	108, 259, 333, 445, 557, 563
BstMAI	GTCTC	2 cut(s)	274, 438
BstMBI	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 598
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	175, 806
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	143, 606, 907
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	851
BtsI	GCAGTG	3 cut(s)	175, 765, 804
BtsIMutI	CAGTG	3 cut(s)	175, 765, 804
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	218, 865
CfoI	GCGC	2 cut(s)	301, 462
Cfr13I	GGNCC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	208, 236
CviAII	CATG	2 cut(s)	430, 752
CviQI	GTAC	2 cut(s)	208, 236
DdeI	CTNAG	2 cut(s)	109, 305
DpnI	GATC	6 cut(s)	107, 258, 332, 444, 556, 562
DpnII	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	87, 879
EarI	CTCTTC	2 cut(s)	87, 879
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 339
EcoRII	CCWGG	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	433, 755
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 350, 382
FaqI	GGGAC	2 cut(s)	701, 896
FatI	CATG	2 cut(s)	429, 751
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	838
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	2 cut(s)	300, 461
GluI	GCNGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	143, 606, 907
HhaI	GCGC	2 cut(s)	301, 462
Hin1II	CATG	2 cut(s)	433, 755
Hin6I	GCGC	2 cut(s)	299, 460
HinP1I	GCGC	2 cut(s)	299, 460
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	52, 65, 289, 812
HphI	GGTGA	5 cut(s)	67, 356, 584, 607, 842
Hpy166II	GTNNAC	2 cut(s)	173, 190
Hpy188I	TCNGA	2 cut(s)	70, 856
Hpy188III	TCNNGA	2 cut(s)	558, 718
Hpy8I	GTNNAC	2 cut(s)	173, 190
HpyAV	CCTTC	5 cut(s)	26, 96, 335, 725, 779
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4V	TGCA	4 cut(s)	173, 668, 758, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 598
HpyF3I	CTNAG	2 cut(s)	109, 305
Hsp92II	CATG	2 cut(s)	433, 755
HspAI	GCGC	2 cut(s)	299, 460
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
LmnI	GCTCC	5 cut(s)	35, 118, 363, 451, 521
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	5 cut(s)	310, 655, 728, 745, 850
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	6 cut(s)	107, 258, 332, 444, 556, 562
MboI	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
MboII	GAAGA	7 cut(s)	74, 251, 359, 495, 674, 869, 896
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	3 cut(s)	175, 456, 806
MluCI	AATT	4 cut(s)	39, 478, 576, 794
MnlI	CCTC	8 cut(s)	12, 126, 154, 189, 206, 379, 637, 880
MseI	TTAA	4 cut(s)	152, 470, 513, 919
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	154, 598
NdeII	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
NlaIII	CATG	2 cut(s)	433, 755
NmeAIII	GCCGAG	2 cut(s)	97, 632
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	583
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	4 cut(s)	52, 65, 289, 812
PkrI	GCNGC	1 cut(s)	391
Ple19I	CGATCG	1 cut(s)	563
PscI	ACATGT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	209, 237
RsaNI	GTAC	2 cut(s)	208, 236
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	152, 470, 513, 919
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	6 cut(s)	105, 256, 330, 442, 554, 560
Sau96I	GGNCC	1 cut(s)	905
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	3 cut(s)	175, 456, 806
SfaNI	GCATC	5 cut(s)	310, 655, 728, 745, 850
SmlI	CTYRAG	2 cut(s)	512, 541
SmoI	CTYRAG	2 cut(s)	512, 541
Sse9I	AATT	4 cut(s)	39, 478, 576, 794
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	823
TaqI	TCGA	3 cut(s)	204, 563, 717
TasI	AATT	4 cut(s)	39, 478, 576, 794
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	4 cut(s)	52, 65, 289, 812
Tru1I	TTAA	4 cut(s)	152, 470, 513, 919
Tru9I	TTAA	4 cut(s)	152, 470, 513, 919
TscAI	CASTG	3 cut(s)	175, 765, 811
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	44, 440, 551, 840
TspRI	CASTG	3 cut(s)	175, 765, 811
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	171
XagI	CCTNNNNNAGG	2 cut(s)	120, 339
XapI	RAATTY	1 cut(s)	794
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.