Rmu_ssc0000189.1_g000016

autophagy protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
Physical Location & Seq
Reverse (-)
120578 .. 125642
5065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000016.1.cds

Sequence Viewer

Length: 1083 bp
atggaagcacagaggtttttatgggaaggagcaattcctttgcagattcatctccacgaatccgaagtcacgactcttccttctcccccgcccgccctgatcttagctcctcggctagggtacctaccgttgttggcctcgcatctaaagccttacttcagcaccgcacttcctcctggtgttgacactatttggttcgactacaaaggcttgcccttgaaatggtatataccaacaggagttctttttgatcttctttgtgcagaaccagagagaccctggaatttaacggttcattttagaggatatccaggaaacatattgatcccgtgtgaaggtgaagatagcataaagtggaactttattaactcattaaaagaggcagcatatataatcaatggaaactgcaagaatgtgatgaacatgtctcaacctgatcaggtggagctctggcgctctgtcttaaatggtaatttggactcctaccgacgggtatcttctaaacttaagcttgaagccgttggggaaaggaactcgagctcgccaagatcccgatcgagtatgggtgaagttgatgtttctgggcaggtgaagccaggccgagttccagttcggttatatgtttggaatgtcagtgaagactttgatgacttagaagatgcaccaccgattgatagttgggacaaagtttcttacataaaccggcctgtcgagatacaagaaggtagatgcttcactttacatgatgcagtgaagagccttctgccagactattttgtggtcaaatccttgggcactgctgagtcactgacagtagttggtgatgacgagcaaagagtttcatccgaagatgcaagtgatgataaaaaagctgaagaggaagtagaaacttcatctgatgaccatgtaaaggctagttacgaacatgaagagcccgaaatcaagctggttcgtatacaaggtattgaaccaaaactggagataccattttcttgggtggcaaacaacttaatgcaccctgagcacttccttcatatctctgtatatttgaaagtacgacaggtcaataataccatgtcatag

Protein Analysis

360

Amino Acids

40.78

Weight (kDa)

5.01

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 577
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 955
AciI CCGC 3 cut(s) 89, 93, 165
AclWI GGATC 2 cut(s) 319, 543
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 142, 894
AfaI GTAC 2 cut(s) 122, 1056
AfiI CCNNNNNNNGG 5 cut(s) 116, 222, 335, 489, 910
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 4 cut(s) 220, 515, 968, 1051
AjnI CCWGG 4 cut(s) 175, 278, 310, 595
AluBI AGCT 6 cut(s) 107, 448, 511, 540, 872, 946
AluI AGCT 6 cut(s) 107, 448, 511, 540, 872, 946
Alw21I GWGCWC 3 cut(s) 450, 542, 1026
Alw26I GTCTC 2 cut(s) 268, 432
AlwI GGATC 2 cut(s) 319, 543
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 3 cut(s) 135, 598, 704
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 283
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
Asp718I GGTACC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 456
AsuHPI GGTGA 4 cut(s) 350, 578, 601, 833
AvaI CYCGRG 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 797
BanI GGYRCC 1 cut(s) 120
BanII GRGCYC 3 cut(s) 450, 542, 936
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 3 cut(s) 450, 542, 1026
BbvI GCAGC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 4 cut(s) 177, 280, 312, 597
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 268, 432
BfaI CTAG 2 cut(s) 116, 915
BfoI RGCGCY 1 cut(s) 457
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 4 cut(s) 177, 280, 312, 597
BmeT110I CYCGRG 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 177, 280, 312, 597
BmsI GCATC 5 cut(s) 151, 649, 719, 736, 841
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 998
Bpu10I CCTNAGC 1 cut(s) 1020
BsaBI GATNNNNATC 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 110, 278, 789
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 222, 335, 489, 910
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 2 cut(s) 608, 981
Bse8I GATNNNNATC 1 cut(s) 553
BseBI CCWGG 4 cut(s) 177, 280, 312, 597
BseDI CCNNGG 3 cut(s) 110, 278, 789
BseGI GGATG 1 cut(s) 842
BseJI GATNNNNATC 1 cut(s) 553
BseLI CCNNNNNNNGG 5 cut(s) 116, 222, 335, 489, 910
BseMII CTCAG 2 cut(s) 792, 1011
BseNI ACTGG 2 cut(s) 608, 981
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 557
BshFI GGCC 3 cut(s) 137, 600, 706
BshNI GGYRCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 557
BsiHKAI GWGCWC 3 cut(s) 450, 542, 1026
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 1 cut(s) 703
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 5 cut(s) 116, 222, 335, 489, 910
BsmAI GTCTC 2 cut(s) 268, 432
BsmFI GGGAC 1 cut(s) 695
BsnI GGCC 3 cut(s) 137, 600, 706
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 5 cut(s) 450, 542, 797, 936, 1026
Bsp143I GATC 6 cut(s) 99, 250, 324, 436, 548, 554
BspACI CCGC 3 cut(s) 89, 93, 165
BspANI GGCC 3 cut(s) 137, 600, 706
BspCNI CTCAG 2 cut(s) 793, 1012
BspLI GGNNCC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 2 cut(s) 319, 543
BspQI GCTCTTC 2 cut(s) 749, 924
BspT107I GGYRCC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 2 cut(s) 608, 981
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 3 cut(s) 110, 278, 789
BssMI GATC 6 cut(s) 99, 250, 324, 436, 548, 554
BssNAI GTATAC 1 cut(s) 956
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 956
Bst2UI CCWGG 4 cut(s) 177, 280, 312, 597
Bst4CI ACNGT 3 cut(s) 129, 292, 814
Bst6I CTCTTC 4 cut(s) 81, 749, 870, 924
BstAFI CTTAAG 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 93, 212, 542
BstDEI CTNAG 4 cut(s) 103, 652, 801, 1020
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 842
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 6 cut(s) 102, 253, 327, 439, 551, 557
BstMAI GTCTC 2 cut(s) 268, 432
BstMBI GATC 6 cut(s) 99, 250, 324, 436, 548, 554
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 3 cut(s) 148, 592, 1021
BstNI CCWGG 4 cut(s) 177, 280, 312, 597
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 4 cut(s) 175, 278, 310, 595
BstSLI GKGCMC 1 cut(s) 797
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 993
BstYI RGATCY 1 cut(s) 548
BstZ17I GTATAC 1 cut(s) 956
BsuRI GGCC 3 cut(s) 137, 600, 706
BtsCI GGATG 1 cut(s) 842
BtsI GCAGTG 2 cut(s) 756, 795
BtsIMutI CAGTG 4 cut(s) 640, 756, 795, 806
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 3 cut(s) 93, 212, 542
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 702
Csp6I GTAC 2 cut(s) 121, 1055
CviAII CATG 5 cut(s) 424, 743, 905, 926, 1075
CviQI GTAC 2 cut(s) 121, 1055
DdeI CTNAG 4 cut(s) 103, 652, 801, 1020
DpnI GATC 6 cut(s) 101, 252, 326, 438, 550, 556
DpnII GATC 6 cut(s) 99, 250, 324, 436, 548, 554
Eam1104I CTCTTC 4 cut(s) 81, 749, 870, 924
EarI CTCTTC 4 cut(s) 81, 749, 870, 924
Ecl136II GAGCTC 2 cut(s) 448, 540
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 3 cut(s) 450, 542, 936
Eco31I GGTCTC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 308
Eco53kI GAGCTC 2 cut(s) 448, 540
Eco57I CTGAAG 2 cut(s) 142, 894
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 2 cut(s) 448, 540
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoRII CCWGG 4 cut(s) 175, 278, 310, 595
EcoRV GATATC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 3 cut(s) 450, 542, 936
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 5 cut(s) 427, 746, 908, 929, 1078
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 344, 376
FaqI GGGAC 1 cut(s) 695
FatI CATG 5 cut(s) 423, 742, 904, 925, 1074
FauI CCCGC 2 cut(s) 96, 100
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 829
FriOI GRGCYC 3 cut(s) 450, 542, 936
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 116, 915
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 998
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 3 cut(s) 137, 600, 706
HapII CCGG 1 cut(s) 703
HhaI GCGC 1 cut(s) 456
Hin1II CATG 5 cut(s) 427, 746, 908, 929, 1078
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 5 cut(s) 46, 59, 73, 479, 803
HpaII CCGG 1 cut(s) 703
HphI GGTGA 4 cut(s) 350, 578, 601, 833
Hpy166II GTNNAC 2 cut(s) 184, 956
Hpy188I TCNGA 3 cut(s) 64, 847, 898
Hpy188III TCNNGA 3 cut(s) 70, 552, 712
Hpy8I GTNNAC 2 cut(s) 184, 956
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 6 cut(s) 20, 90, 329, 716, 770, 1040
HpyCH4III ACNGT 3 cut(s) 129, 292, 814
HpyCH4V TGCA 7 cut(s) 43, 263, 408, 662, 749, 854, 1015
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 592, 1021
HpyF3I CTNAG 4 cut(s) 103, 652, 801, 1020
Hsp92II CATG 5 cut(s) 427, 746, 908, 929, 1078
HspAI GCGC 1 cut(s) 454
KpnI GGTACC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 6 cut(s) 99, 250, 324, 436, 548, 554
LguI GCTCTTC 2 cut(s) 749, 924
LmnI GCTCC 3 cut(s) 29, 112, 445
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 5 cut(s) 151, 649, 719, 736, 841
MaeI CTAG 2 cut(s) 116, 915
MaeIII GTNAC 3 cut(s) 67, 804, 917
MalI GATC 6 cut(s) 101, 252, 326, 438, 550, 556
MboI GATC 6 cut(s) 99, 250, 324, 436, 548, 554
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 5 cut(s) 450, 542, 797, 936, 1026
MluCI AATT 3 cut(s) 33, 283, 472
MlyI GAGTC 3 cut(s) 67, 473, 812
MnlI CCTC 7 cut(s) 6, 120, 148, 183, 296, 373, 871
MseI TTAA 6 cut(s) 287, 366, 374, 464, 507, 1010
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 1 cut(s) 703
MspR9I CCNGG 4 cut(s) 177, 280, 312, 597
MvaI CCWGG 4 cut(s) 177, 280, 312, 597
MwoI GCNNNNNNNGC 3 cut(s) 148, 592, 1021
NdeII GATC 6 cut(s) 99, 250, 324, 436, 548, 554
NlaIII CATG 5 cut(s) 427, 746, 908, 929, 1078
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 2 cut(s) 91, 626
NmuCI GTSAC 2 cut(s) 67, 804
NspI RCATGY 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 535
PaqCI CACCTGC 1 cut(s) 577
PciI ACATGT 1 cut(s) 423
PciSI GCTCTTC 2 cut(s) 749, 924
PfeI GAWTC 2 cut(s) 46, 59
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 1 cut(s) 385
Ple19I CGATCG 1 cut(s) 557
PleI GAGTC 3 cut(s) 67, 473, 811
PpsI GAGTC 3 cut(s) 67, 473, 811
PscI ACATGT 1 cut(s) 423
Psp124BI GAGCTC 2 cut(s) 450, 542
Psp6I CCWGG 4 cut(s) 175, 278, 310, 595
PspGI CCWGG 4 cut(s) 175, 278, 310, 595
PspN4I GGNNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 535
PsuI RGATCY 1 cut(s) 548
PvuI CGATCG 1 cut(s) 557
RsaI GTAC 2 cut(s) 122, 1056
RsaNI GTAC 2 cut(s) 121, 1055
SacI GAGCTC 2 cut(s) 450, 542
SapI GCTCTTC 2 cut(s) 749, 924
SaqAI TTAA 6 cut(s) 287, 366, 374, 464, 507, 1010
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 6 cut(s) 99, 250, 324, 436, 548, 554
SchI GAGTC 3 cut(s) 67, 473, 812
ScrFI CCNGG 4 cut(s) 177, 280, 312, 597
SduI GDGCHC 5 cut(s) 450, 542, 797, 936, 1026
SfaNI GCATC 5 cut(s) 151, 649, 719, 736, 841
Sfr274I CTCGAG 1 cut(s) 535
SlaI CTCGAG 1 cut(s) 535
SmlI CTYRAG 2 cut(s) 506, 535
SmoI CTYRAG 2 cut(s) 506, 535
Sse9I AATT 3 cut(s) 33, 283, 472
SsiI CCGC 3 cut(s) 89, 93, 165
SspMI CTAG 2 cut(s) 116, 915
SstI GAGCTC 2 cut(s) 450, 542
StyD4I CCNGG 4 cut(s) 175, 278, 310, 595
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 129, 292, 814
TaqI TCGA 4 cut(s) 198, 536, 557, 711
TasI AATT 3 cut(s) 33, 283, 472
TfiI GAWTC 2 cut(s) 46, 59
Tru1I TTAA 6 cut(s) 287, 366, 374, 464, 507, 1010
Tru9I TTAA 6 cut(s) 287, 366, 374, 464, 507, 1010
TscAI CASTG 4 cut(s) 640, 756, 802, 813
TseFI GTSAC 2 cut(s) 67, 804
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 67, 804
TspDTI ATGAA 7 cut(s) 38, 284, 434, 831, 882, 942, 1022
TspRI CASTG 4 cut(s) 640, 756, 802, 813
Vha464I CTTAAG 1 cut(s) 506
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 955
XspI CTAG 2 cut(s) 116, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.