Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

38265699 .. 38271759

Gene Structure 6061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATGTGGAAGCACAGAGGTTTGTATGGGGCGGAGCAATTCCTCTGCAGATTCATCTCCATGAATCCGACGTCGCCACTCTTCCTGCTCCCCCACCTGCCCTGATCTTAGCTCCTCGGATTGGGTATCTGCCATTGTTGGCCTCGGTTCTAAAACCTCACTTCAGCTCTGCACTTCCTCCTCGCTTAGACGCCATTTGGTTCGAGTACAAAGGCTTGCCCTTGAAATGGTATATACCGACAGGAGTTCTATTTGATCTTCTATGTGCAGAGCCAGAAAGACCTTGGAATCTCACGGTGCATTTTACAGGATATCCAGGGAACATATTGATTCCTTGTGATGGTGAAGATAGTGTAAAGTGGAGCTTTATCAATTCTTTGAAAGAGGCTGCATATATAATAAATGGAAACTGTAAGAATGTGATGAACATGTCTCAGCCAGATCAGGTGGAGCTTTGGCGTTCGGTCTTAAATGGTAATTTGGAAGCCTACTTCCGGGTATCTTCTAAACTTAAGCTTGGAACTGTTGGGGAAGAATGGGCAGCAAAGAATTCATGCTCTCCAAAATCCAGACCAAATATGGGCGAAACTGATGTTTCTGGACAAGTGAAGGCAGGTCGTGTTCCAGTTCGTTTATATGTTTGGAGTGTCGGTGAGGATTTTGATGATTTAGAAGATGCACCTCAGATTGATAGTTGGGACAAAGTCTCTTACATTAACCGGCCTGTTGAGATACAAGGAGGAGAAGGAGGTAGATGCTTCACTCTAAATGATGCAATCAAGAGCCTTTTGCCAGAGTATTTTCCTGACAAATCCTTGATCCCTGAAGAATCACCAACGGTAGGTGAGGAGGATGAACAAAAGGTTTCCTCTGAAGATGCAATCAAGAGCGATATAGGAGCCAAAGAGGAAGTAGAAAAGTCAAGCGAACGTATAAAGTCTTGCAACCAATACGATGATGCTGAAATCAAACTAGTCCGTATCCAAGGTATTGAGCCGAAATTGGAGATACCGTTCTTTTGGGTGGCAAACAACTTACTGAACCCCGAGCACTTTCTTCATATCTGTGTGTATTTGAAAGTACCACAAATCAATAACATGTGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

370

Amino Acids

41.42

Weight (kDa)

4.91

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	2 cut(s)	106, 605
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	3 cut(s)	148, 846, 894
AcyI	GRCGYC	2 cut(s)	72, 192
AfaI	GTAC	2 cut(s)	209, 1083
AfiI	CCNNNNNNNGG	6 cut(s)	122, 228, 341, 495, 581, 842
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	429, 1098
AgsI	TTSAA	3 cut(s)	226, 382, 1078
AhlI	ACTAGT	1 cut(s)	973
AjnI	CCWGG	1 cut(s)	316
AloI	GAACNNNNNNTCC	2 cut(s)	998, 1030
AluBI	AGCT	5 cut(s)	113, 168, 366, 454, 517
AluI	AGCT	5 cut(s)	113, 168, 366, 454, 517
Alw21I	GWGCWC	1 cut(s)	1053
Alw26I	GTCTC	2 cut(s)	438, 712
AlwI	GGATC	1 cut(s)	814
Ama87I	CYCGRG	1 cut(s)	1046
AoxI	GGCC	2 cut(s)	141, 722
ApeKI	GCWGC	2 cut(s)	389, 542
ApoI	RAATTY	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	4 cut(s)	356, 665, 825, 857
AvaI	CYCGRG	1 cut(s)	1046
Bbv12I	GWGCWC	1 cut(s)	1053
BbvI	GCAGC	2 cut(s)	376, 554
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	992
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	2 cut(s)	438, 712
BcuI	ACTAGT	1 cut(s)	973
BfaI	CTAG	1 cut(s)	974
BfmI	CTRYAG	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	2 cut(s)	106, 605
BfuI	GTATCC	1 cut(s)	992
BisI	GCNGC	2 cut(s)	390, 543
BlsI	GCNGC	2 cut(s)	391, 544
Bme1390I	CCNGG	2 cut(s)	318, 497
BmeT110I	CYCGRG	1 cut(s)	1046
BmiI	GGNNCC	1 cut(s)	901
BmrFI	CCNGG	2 cut(s)	318, 497
BmsI	GCATC	5 cut(s)	667, 746, 763, 868, 949
BpuMI	CCSGG	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	72, 192
BsaJI	CCNNGG	5 cut(s)	116, 144, 284, 317, 985
BsaXI	ACNNNNNCTCC	4 cut(s)	637, 667, 998, 1028
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 228, 341, 495, 581, 842
Bse118I	RCCGGY	1 cut(s)	720
Bse1I	ACTGG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	5 cut(s)	116, 144, 284, 317, 985
BseGI	GGATG	2 cut(s)	10, 859
BseLI	CCNNNNNNNGG	6 cut(s)	122, 228, 341, 495, 581, 842
BseMII	CTCAG	2 cut(s)	449, 698
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	4 cut(s)	105, 171, 756, 863
BseXI	GCAGC	2 cut(s)	376, 554
BsgI	GTGCAG	2 cut(s)	156, 288
BshFI	GGCC	2 cut(s)	143, 724
BsiHKAI	GWGCWC	1 cut(s)	1053
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	2 cut(s)	496, 721
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	6 cut(s)	122, 228, 341, 495, 581, 842
BsmAI	GTCTC	2 cut(s)	438, 712
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	143, 724
BsoBI	CYCGRG	1 cut(s)	1046
Bsp1286I	GDGCHC	1 cut(s)	1053
Bsp143I	GATC	4 cut(s)	105, 256, 442, 819
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	143, 724
BspCNI	CTCAG	2 cut(s)	448, 697
BspLI	GGNNCC	1 cut(s)	901
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	2 cut(s)	106, 605
BspPI	GGATC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	626
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	5 cut(s)	116, 144, 284, 317, 985
BssMI	GATC	4 cut(s)	105, 256, 442, 819
BssNI	GRCGYC	2 cut(s)	72, 192
BssT1I	CCWWGG	2 cut(s)	284, 985
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	5 cut(s)	298, 413, 526, 841, 1014
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	72, 192
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	109, 187, 435, 684
BstF5I	GGATG	2 cut(s)	10, 859
BstKTI	GATC	4 cut(s)	108, 259, 445, 822
BstMAI	GTCTC	2 cut(s)	438, 712
BstMBI	GATC	4 cut(s)	105, 256, 442, 819
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	433, 1102
BstSCI	CCNGG	2 cut(s)	316, 495
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	376, 554
BsuI	GTATCC	1 cut(s)	992
BsuRI	GGCC	2 cut(s)	143, 724
BtsCI	GGATG	2 cut(s)	10, 859
BveI	ACCTGC	2 cut(s)	106, 605
Cac8I	GCNNGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	720
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	208, 1082
CviAII	CATG	4 cut(s)	62, 430, 555, 1099
CviQI	GTAC	2 cut(s)	208, 1082
DdeI	CTNAG	4 cut(s)	109, 187, 435, 684
DpnI	GATC	4 cut(s)	107, 258, 444, 821
DpnII	GATC	4 cut(s)	105, 256, 442, 819
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	284, 985
Eco32I	GATATC	1 cut(s)	314
Eco57I	CTGAAG	3 cut(s)	148, 846, 894
Eco88I	CYCGRG	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	284, 985
ErhI	CCWWGG	2 cut(s)	284, 985
FaeI	CATG	4 cut(s)	65, 433, 558, 1102
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	61, 429, 554, 1098
Fnu4HI	GCNGC	2 cut(s)	390, 543
FokI	GGATG	2 cut(s)	17, 866
Fsp4HI	GCNGC	2 cut(s)	390, 543
FspBI	CTAG	1 cut(s)	974
GluI	GCNGC	2 cut(s)	390, 543
HaeIII	GGCC	2 cut(s)	143, 724
HapII	CCGG	2 cut(s)	496, 721
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	2 cut(s)	72, 192
Hin1II	CATG	4 cut(s)	65, 433, 558, 1102
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	52, 65, 289, 331, 830
HpaII	CCGG	2 cut(s)	496, 721
HphI	GGTGA	4 cut(s)	356, 665, 825, 857
Hpy188I	TCNGA	4 cut(s)	70, 120, 687, 874
Hpy188III	TCNNGA	5 cut(s)	570, 600, 781, 806, 886
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	2 cut(s)	604, 740
HpyCH4III	ACNGT	5 cut(s)	298, 413, 526, 841, 1014
HpyCH4IV	ACGT	2 cut(s)	72, 931
HpyCH4V	TGCA	9 cut(s)	49, 173, 269, 301, 392, 680, 776, 881, 945
HpyF3I	CTNAG	4 cut(s)	109, 187, 435, 684
HpySE526I	ACGT	2 cut(s)	72, 931
Hsp92I	GRCGYC	2 cut(s)	72, 192
Hsp92II	CATG	4 cut(s)	65, 433, 558, 1102
Kzo9I	GATC	4 cut(s)	105, 256, 442, 819
LmnI	GCTCC	6 cut(s)	35, 94, 118, 363, 451, 899
Lsp1109I	GCAGC	2 cut(s)	376, 554
LweI	GCATC	5 cut(s)	667, 746, 763, 868, 949
MaeI	CTAG	1 cut(s)	974
MaeII	ACGT	2 cut(s)	72, 931
MalI	GATC	4 cut(s)	107, 258, 444, 821
MboI	GATC	4 cut(s)	105, 256, 442, 819
MboII	GAAGA	9 cut(s)	74, 251, 359, 495, 545, 686, 839, 887, 1049
MhlI	GDGCHC	1 cut(s)	1053
MluCI	AATT	5 cut(s)	39, 373, 478, 550, 1001
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	3 cut(s)	470, 513, 717
MslI	CAYNNNNRTG	2 cut(s)	60, 1065
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	2 cut(s)	496, 721
MspR9I	CCNGG	2 cut(s)	318, 497
MvaI	CCWGG	1 cut(s)	318
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	4 cut(s)	105, 256, 442, 819
NlaIII	CATG	4 cut(s)	65, 433, 558, 1102
NlaIV	GGNNCC	1 cut(s)	901
NspI	RCATGY	2 cut(s)	433, 1102
PaqCI	CACCTGC	1 cut(s)	106
PciI	ACATGT	2 cut(s)	429, 1098
PfeI	GAWTC	5 cut(s)	52, 65, 289, 331, 830
PflFI	GACNNNGTC	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	391, 544
PscI	ACATGT	2 cut(s)	429, 1098
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	704
RsaI	GTAC	2 cut(s)	209, 1083
RsaNI	GTAC	2 cut(s)	208, 1082
RseI	CAYNNNNRTG	2 cut(s)	60, 1065
SaqAI	TTAA	3 cut(s)	470, 513, 717
SatI	GCNGC	2 cut(s)	390, 543
Sau3AI	GATC	4 cut(s)	105, 256, 442, 819
ScrFI	CCNGG	2 cut(s)	318, 497
SduI	GDGCHC	1 cut(s)	1053
SfaNI	GCATC	5 cut(s)	667, 746, 763, 868, 949
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	60, 1065
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SpeI	ACTAGT	1 cut(s)	973
Sse9I	AATT	5 cut(s)	39, 373, 478, 550, 1001
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	974
StyD4I	CCNGG	2 cut(s)	316, 495
StyI	CCWWGG	2 cut(s)	284, 985
TaaI	ACNGT	5 cut(s)	298, 413, 526, 841, 1014
TaiI	ACGT	2 cut(s)	75, 934
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	5 cut(s)	39, 373, 478, 550, 1001
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	5 cut(s)	52, 65, 289, 331, 830
Tru1I	TTAA	3 cut(s)	470, 513, 717
Tru9I	TTAA	3 cut(s)	470, 513, 717
TseI	GCWGC	2 cut(s)	389, 542
TspDTI	ATGAA	6 cut(s)	44, 78, 440, 543, 870, 1049
TspGWI	ACGGA	1 cut(s)	968
Tth111I	GACNNNGTC	1 cut(s)	704
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	2 cut(s)	433, 1102
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 577
XspI	CTAG	1 cut(s)	974
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.