Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01079

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

23124 .. 30120

Gene Structure 6997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTACAGATTCATCTCCACGAATCCGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCGTGATCTTAGCTCCTCGGCTAGGATACCTACCATTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAGAGGCTTTCCCTTGAAATGGTATATACCAACAGGAACTTGGAATTTAACGGTGCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAGCTTTATCAACTCATTAAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTGTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCATAAATGGTAATTTGGAAGCCTACCTACGGGTATCTTCTAAACTTACTTGGAGCCGAGTTCCTGTTCGATTATATGTTTGGTATGTCATTGAGGACTTTGATGACTTGGAAGATGCTCTTATCACACCACCGATTGATAGTTGGGACAAAGTTTTTTACATAAACCAGCCTGTCGAGATACAAGGAGAAGACTATTTTGTGGAGAAATCCTTGGGCACTGCTGAATCATTGACAGTAGGTGGTGATGACAAGCAAAGAGTTTCATCCGAAGATGCAAGCGACGATAAAAAAGCCGAAGAGGAAGGTATTGAACCGAAACTGGATCTACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCTGAGCACTTTCTTCATATCTGTCATAGGTGGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

277

Amino Acids

31.81

Weight (kDa)

4.85

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 83	5.7e-19	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	104 - 160	1.1e-21	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	164 - 272	4.2e-08	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	289, 762
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	122, 228, 305, 459
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	226, 743
AjnI	CCWGG	2 cut(s)	181, 280
AluBI	AGCT	3 cut(s)	113, 330, 418
AluI	AGCT	3 cut(s)	113, 330, 418
Alw21I	GWGCWC	3 cut(s)	175, 420, 801
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	289, 762
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	67, 320, 686
BaeGI	GKGCMC	2 cut(s)	175, 650
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	3 cut(s)	175, 420, 801
BbvI	GCAGC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	183, 282
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	406
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	183, 282
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	183, 282
BmsI	GCATC	2 cut(s)	535, 694
BpiI	GAAGAC	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	795
BsaJI	CCNNGG	2 cut(s)	116, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 228, 305, 459
Bse1I	ACTGG	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	183, 282
BseDI	CCNNGG	2 cut(s)	116, 642
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	4 cut(s)	122, 228, 305, 459
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	175, 650
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	3 cut(s)	175, 420, 801
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	4 cut(s)	122, 228, 305, 459
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	4 cut(s)	175, 420, 650, 801
Bsp143I	GATC	4 cut(s)	105, 294, 406, 754
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	289, 762
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	116, 642
BssMI	GATC	4 cut(s)	105, 294, 406, 754
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	183, 282
Bst4CI	ACNGT	2 cut(s)	262, 667
Bst6I	CTCTTC	2 cut(s)	87, 723
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	109, 795
BstENI	CCTNNNNNAGG	2 cut(s)	120, 303
BstF5I	GGATG	1 cut(s)	695
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	4 cut(s)	108, 297, 409, 757
BstMBI	GATC	4 cut(s)	105, 294, 406, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 796
BstNI	CCWGG	2 cut(s)	183, 282
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	181, 280
BstSLI	GKGCMC	2 cut(s)	175, 650
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	695
BtsI	GCAGTG	2 cut(s)	175, 648
BtsIMutI	CAGTG	2 cut(s)	175, 648
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	7, 394
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	109, 795
DpnI	GATC	4 cut(s)	107, 296, 408, 756
DpnII	GATC	4 cut(s)	105, 294, 406, 754
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	87, 723
EarI	CTCTTC	2 cut(s)	87, 723
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 303
EcoRII	CCWGG	2 cut(s)	181, 280
EcoRV	GATATC	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	2 cut(s)	10, 397
FalI	AAGNNNNNCTT	6 cut(s)	146, 178, 314, 346, 534, 566
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	2 cut(s)	6, 393
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	682
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	10, 397
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	190, 401
HindII	GTYRAC	2 cut(s)	190, 401
HinfI	GANTC	3 cut(s)	52, 65, 656
HphI	GGTGA	3 cut(s)	67, 320, 686
Hpy166II	GTNNAC	3 cut(s)	173, 190, 401
Hpy188I	TCNGA	2 cut(s)	70, 700
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	3 cut(s)	173, 190, 401
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	4 cut(s)	26, 96, 299, 728
HpyCH4III	ACNGT	2 cut(s)	262, 667
HpyCH4V	TGCA	5 cut(s)	173, 265, 378, 707, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 796
HpyF3I	CTNAG	2 cut(s)	109, 795
Hsp92II	CATG	2 cut(s)	10, 397
HspAI	GCGC	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	105, 294, 406, 754
LmnI	GCTCC	5 cut(s)	35, 118, 327, 415, 483
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	535, 694
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	4 cut(s)	107, 296, 408, 756
MboI	GATC	4 cut(s)	105, 294, 406, 754
MboII	GAAGA	8 cut(s)	74, 323, 459, 554, 632, 713, 740, 797
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	4 cut(s)	175, 420, 650, 801
MluCI	AATT	3 cut(s)	39, 253, 442
MnlI	CCTC	9 cut(s)	12, 126, 154, 189, 206, 266, 343, 517, 724
MseI	TTAA	4 cut(s)	152, 257, 344, 785
MspR9I	CCNGG	2 cut(s)	183, 282
MvaI	CCWGG	2 cut(s)	183, 282
MwoI	GCNNNNNNNGC	2 cut(s)	154, 796
NdeII	GATC	4 cut(s)	105, 294, 406, 754
NlaIII	CATG	2 cut(s)	10, 397
NlaIV	GGNNCC	1 cut(s)	485
NmeAIII	GCCGAG	2 cut(s)	97, 512
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	397
PciI	ACATGT	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	52, 65, 656
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	181, 280
PspGI	CCWGG	2 cut(s)	181, 280
PspN4I	GGNNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	152, 257, 344, 785
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	105, 294, 406, 754
ScrFI	CCNGG	2 cut(s)	183, 282
SduI	GDGCHC	4 cut(s)	175, 420, 650, 801
SfaNI	GCATC	2 cut(s)	535, 694
Sse9I	AATT	3 cut(s)	39, 253, 442
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	181, 280
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	262, 667
TaqI	TCGA	3 cut(s)	204, 499, 606
TasI	AATT	3 cut(s)	39, 253, 442
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	3 cut(s)	52, 65, 656
Tru1I	TTAA	4 cut(s)	152, 257, 344, 785
Tru9I	TTAA	4 cut(s)	152, 257, 344, 785
TscAI	CASTG	2 cut(s)	175, 655
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	44, 404, 684, 797
TspRI	CASTG	2 cut(s)	175, 655
VneI	GTGCAC	1 cut(s)	171
XagI	CCTNNNNNAGG	2 cut(s)	120, 303
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.