autophagy protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17290 |
| fragaria_vesca | FvH4_5g28670 FvH4_5g28670 |
| malus_domestica | MD08G1242300.v1.1 MD15G1436000.v1.1 |
| prunus_persica | Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 |
| pyrus_communis | pycom08g21020 pycom15g38480 |
| rosa_chinensis | RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631 |
| rosa_laevigata | RLG00000002214 RLG00000017523 RLG00000036864 |
| rosa_multiflora | Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270 |
| rosa_rugosa | Rorug02G0136800 Rorug05G0469500 Rorug07G0195300 |
| rosa_samantha | Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800 |
| rosa_wichuraiana | Rw0G023170 Rw2G014770 Rw7G028690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 16 |
| Acc36I | ACCTGC | 1 cut(s) | 16 |
| AciI | CCGC | 1 cut(s) | 206 |
| AoxI | GGCC | 1 cut(s) | 37 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 40, 275 |
| BaeGI | GKGCMC | 1 cut(s) | 239 |
| BfaI | CTAG | 1 cut(s) | 355 |
| BfuAI | ACCTGC | 1 cut(s) | 16 |
| BmsI | GCATC | 4 cut(s) | 88, 161, 178, 283 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 239 |
| BshFI | GGCC | 1 cut(s) | 39 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| BsnI | GGCC | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 1 cut(s) | 239 |
| BspACI | CCGC | 1 cut(s) | 206 |
| BspANI | GGCC | 1 cut(s) | 39 |
| BspMI | ACCTGC | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssT1I | CCWWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 347 |
| Bst6I | CTCTTC | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 1 cut(s) | 298 |
| BstF5I | GGATG | 1 cut(s) | 284 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 31 |
| BstSLI | GKGCMC | 1 cut(s) | 239 |
| BsuRI | GGCC | 1 cut(s) | 39 |
| BtsCI | GGATG | 1 cut(s) | 284 |
| BtsI | GCAGTG | 2 cut(s) | 198, 237 |
| BtsIMutI | CAGTG | 2 cut(s) | 198, 237 |
| BveI | ACCTGC | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 1 cut(s) | 298 |
| CviAII | CATG | 2 cut(s) | 185, 336 |
| CviJI | RGCY | 5 cut(s) | 39, 145, 201, 314, 354 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 145, 201, 314, 354 |
| Eam1104I | CTCTTC | 1 cut(s) | 312 |
| EarI | CTCTTC | 1 cut(s) | 312 |
| EciI | GGCGGA | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 231 |
| EcoT14I | CCWWGG | 1 cut(s) | 231 |
| ErhI | CCWWGG | 1 cut(s) | 231 |
| FaeI | CATG | 2 cut(s) | 188, 339 |
| FaiI | YATR | 7 cut(s) | 58, 60, 69, 137, 155, 186, 337 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 2 cut(s) | 184, 335 |
| FokI | GGATG | 1 cut(s) | 271 |
| FspBI | CTAG | 1 cut(s) | 355 |
| HaeIII | GGCC | 1 cut(s) | 39 |
| Hin1II | CATG | 2 cut(s) | 188, 339 |
| HinfI | GANTC | 1 cut(s) | 245 |
| HphI | GGTGA | 3 cut(s) | 17, 40, 275 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy99I | CGWCG | 2 cut(s) | 305, 344 |
| HpyAV | CCTTC | 2 cut(s) | 158, 212 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 347 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 191, 296 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 31 |
| Hsp92II | CATG | 2 cut(s) | 188, 339 |
| LpnPI | CCDG | 6 cut(s) | 6, 11, 60, 155, 159, 222 |
| LweI | GCATC | 4 cut(s) | 88, 161, 178, 283 |
| MaeI | CTAG | 1 cut(s) | 355 |
| MboII | GAAGA | 3 cut(s) | 107, 302, 329 |
| MhlI | GDGCHC | 1 cut(s) | 239 |
| MluCI | AATT | 1 cut(s) | 9 |
| MnlI | CCTC | 2 cut(s) | 70, 313 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 31 |
| NlaIII | CATG | 2 cut(s) | 188, 339 |
| NmeAIII | GCCGAG | 1 cut(s) | 65 |
| PaqCI | CACCTGC | 1 cut(s) | 16 |
| PfeI | GAWTC | 1 cut(s) | 245 |
| SduI | GDGCHC | 1 cut(s) | 239 |
| SetI | ASST | 3 cut(s) | 30, 169, 262 |
| SfaNI | GCATC | 4 cut(s) | 88, 161, 178, 283 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SsiI | CCGC | 1 cut(s) | 206 |
| SspMI | CTAG | 1 cut(s) | 355 |
| StyI | CCWWGG | 1 cut(s) | 231 |
| TaaI | ACNGT | 2 cut(s) | 256, 347 |
| TaqI | TCGA | 2 cut(s) | 52, 150 |
| TasI | AATT | 1 cut(s) | 9 |
| TfiI | GAWTC | 1 cut(s) | 245 |
| TscAI | CASTG | 2 cut(s) | 198, 244 |
| TspDTI | ATGAA | 2 cut(s) | 273, 324 |
| TspRI | CASTG | 2 cut(s) | 198, 244 |
| XspI | CTAG | 1 cut(s) | 355 |