Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

18290360 .. 18291388

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGACATGGAAGCCCAGAGCTTTTTATGGAAAGGAGCAATTCCTTTGCAGATTCATCTCCATGAATCCGAAGTCACCACTCTTCCTTCACCCCCACCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTACCGTTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAAGCAGAGAGACCTTGGAATTTAACGGTGCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGACAGCATAAAGTGGAGCTTTATCAACTCATTGAAAGAGGCAGCATATATAATAAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTTTTACATGGTAATTTCGAAGCCTACCAACGGGTATCTTCTAAACTTAAGCTTGGAGCAGTTGGGGAAATTCATGATTCTGGGCAGGTGAAGCAAGGCCGAGTTCCAGTTCGGTTATACGTTTGGAATGTCAGTGAGGACTTTGATGACTTAGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTCAAGATACAAGGAGAAGGTAGATGCTTCACTTTATATGATGCAGTGAAAAGCCTTCTGCCAGACTATTTTGTGGACAAATCGTTGGGCACTGCTGAATCATTGACAGTAGGTCGCGATGATTACGGGCAAAGAATTTCACCCAAAGGTGCAAGCGATGATAAAAAAGCCAAAGAGGAAGTAGAAACTCTATGTGACGACCATGTAAAGGCTAGTTACGAATATGAAGAGCCTAAAATCAAGCTGGTTCGTATACAAGGTATTGAACCGAAACTGGAGATACCATTTTCTTGGGTAGCAAACAACTTAATGCACCCTGAGCACTTTCTTTATATCTGTGTATATCTGAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

342

Amino Acids

38.83

Weight (kDa)

5.36

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 102	2.2e-29	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	116 - 172	1e-23	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	189 - 338	1.7e-19	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	925
AccII	CGCG	1 cut(s)	789
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	3 cut(s)	289, 534, 807
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 880
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	226, 382, 938
AhdI	GACNNNNNGTC	1 cut(s)	783
AjnI	CCWGG	2 cut(s)	181, 316
AluBI	AGCT	6 cut(s)	21, 113, 366, 454, 517, 916
AluI	AGCT	6 cut(s)	21, 113, 366, 454, 517, 916
Alw21I	GWGCWC	3 cut(s)	175, 456, 996
Alw26I	GTCTC	2 cut(s)	274, 438
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	3 cut(s)	141, 562, 668
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	3 cut(s)	289, 534, 807
AspLEI	GCGC	1 cut(s)	462
AsuHPI	GGTGA	5 cut(s)	67, 81, 356, 565, 804
AsuII	TTCGAA	1 cut(s)	483
BaeGI	GKGCMC	2 cut(s)	175, 764
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	3 cut(s)	175, 456, 996
BbvI	GCAGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	183, 318
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	274, 438
BfaI	CTAG	2 cut(s)	122, 885
BfoI	RGCGCY	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	183, 318
BmeRI	GACNNNNNGTC	1 cut(s)	783
BmrFI	CCNGG	2 cut(s)	183, 318
BmsI	GCATC	3 cut(s)	613, 686, 703
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	968
Bpu10I	CCTNAGC	1 cut(s)	990
Bpu14I	TTCGAA	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	116, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 880
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	2 cut(s)	572, 951
BseBI	CCWGG	2 cut(s)	183, 318
BseDI	CCNNGG	2 cut(s)	116, 284
BseLI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 880
BseMII	CTCAG	1 cut(s)	981
BseNI	ACTGG	2 cut(s)	572, 951
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	175, 764
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	3 cut(s)	143, 564, 670
BsiHKAI	GWGCWC	3 cut(s)	175, 456, 996
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 880
BsmAI	GTCTC	2 cut(s)	274, 438
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	143, 564, 670
Bso31I	GGTCTC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	4 cut(s)	175, 456, 764, 996
Bsp143I	GATC	4 cut(s)	105, 256, 330, 442
Bsp68I	TCGCGA	1 cut(s)	789
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	143, 564, 670
BspCNI	CTCAG	1 cut(s)	982
BspFNI	CGCG	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	894
BspT104I	TTCGAA	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	572, 951
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	2 cut(s)	116, 284
BssMI	GATC	4 cut(s)	105, 256, 330, 442
BssNAI	GTATAC	1 cut(s)	926
BssT1I	CCWWGG	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	926
Bst2UI	CCWGG	2 cut(s)	183, 318
Bst4CI	ACNGT	3 cut(s)	135, 298, 781
Bst6I	CTCTTC	2 cut(s)	87, 894
BstAFI	CTTAAG	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	218, 826
BstDEI	CTNAG	3 cut(s)	109, 616, 990
BstENI	CCTNNNNNAGG	2 cut(s)	120, 339
BstFNI	CGCG	1 cut(s)	789
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	108, 259, 333, 445
BstMAI	GTCTC	2 cut(s)	274, 438
BstMBI	GATC	4 cut(s)	105, 256, 330, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 556, 991
BstNI	CCWGG	2 cut(s)	183, 318
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	181, 316
BstSLI	GKGCMC	2 cut(s)	175, 764
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	963
BstZ17I	GTATAC	1 cut(s)	926
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	143, 564, 670
BtgZI	GCGATG	2 cut(s)	804, 843
BtsI	GCAGTG	3 cut(s)	175, 723, 762
BtsIMutI	CAGTG	4 cut(s)	175, 604, 723, 762
BtuMI	TCGCGA	1 cut(s)	789
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	218, 826
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	666
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	6 cut(s)	7, 62, 430, 473, 539, 875
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	109, 616, 990
DpnI	GATC	4 cut(s)	107, 258, 332, 444
DpnII	GATC	4 cut(s)	105, 256, 330, 442
DraI	TTTAAA	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	87, 894
Eam1105I	GACNNNNNGTC	1 cut(s)	783
EarI	CTCTTC	2 cut(s)	87, 894
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 339
EcoRII	CCWGG	2 cut(s)	181, 316
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	6 cut(s)	10, 65, 433, 476, 542, 878
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 350, 382
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	6 cut(s)	6, 61, 429, 472, 538, 874
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	925
Fnu4HI	GCNGC	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	122, 885
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	968
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	143, 564, 670
HapII	CCGG	1 cut(s)	667
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	6 cut(s)	10, 65, 433, 476, 542, 878
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	52, 65, 542, 770
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	5 cut(s)	67, 81, 356, 565, 804
Hpy166II	GTNNAC	4 cut(s)	173, 190, 748, 926
Hpy188I	TCNGA	3 cut(s)	70, 1020, 1028
Hpy188III	TCNNGA	3 cut(s)	539, 676, 788
Hpy8I	GTNNAC	4 cut(s)	173, 190, 748, 926
HpyAV	CCTTC	4 cut(s)	96, 335, 683, 737
HpyCH4III	ACNGT	3 cut(s)	135, 298, 781
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	9 cut(s)	49, 173, 269, 301, 414, 626, 716, 824, 985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 556, 991
HpyF3I	CTNAG	3 cut(s)	109, 616, 990
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	10, 65, 433, 476, 542, 878
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	105, 256, 330, 442
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	5 cut(s)	35, 118, 363, 451, 521
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	613, 686, 703
MaeI	CTAG	2 cut(s)	122, 885
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	73, 866, 887
MalI	GATC	4 cut(s)	107, 258, 332, 444
MboI	GATC	4 cut(s)	105, 256, 330, 442
MboII	GAAGA	6 cut(s)	74, 251, 359, 495, 632, 911
MhlI	GDGCHC	4 cut(s)	175, 456, 764, 996
MluCI	AATT	5 cut(s)	39, 289, 478, 534, 807
MnlI	CCTC	7 cut(s)	126, 154, 189, 302, 379, 595, 841
MseI	TTAA	4 cut(s)	152, 293, 513, 980
MslI	CAYNNNNRTG	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	2 cut(s)	183, 318
MvaI	CCWGG	2 cut(s)	183, 318
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	154, 556, 991
NdeII	GATC	4 cut(s)	105, 256, 330, 442
NlaIII	CATG	6 cut(s)	10, 65, 433, 476, 542, 878
NmeAIII	GCCGAG	2 cut(s)	97, 590
NmuCI	GTSAC	2 cut(s)	73, 866
NruI	TCGCGA	1 cut(s)	789
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	541
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	894
PfeI	GAWTC	4 cut(s)	52, 65, 542, 770
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	181, 316
PspGI	CCWGG	2 cut(s)	181, 316
RruI	TCGCGA	1 cut(s)	789
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	4 cut(s)	152, 293, 513, 980
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	4 cut(s)	105, 256, 330, 442
ScrFI	CCNGG	2 cut(s)	183, 318
SduI	GDGCHC	4 cut(s)	175, 456, 764, 996
SfaNI	GCATC	3 cut(s)	613, 686, 703
SfuI	TTCGAA	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	39, 289, 478, 534, 807
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	122, 885
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	181, 316
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	135, 298, 781
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	204, 483
TasI	AATT	5 cut(s)	39, 289, 478, 534, 807
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	4 cut(s)	52, 65, 542, 770
Tru1I	TTAA	4 cut(s)	152, 293, 513, 980
Tru9I	TTAA	4 cut(s)	152, 293, 513, 980
TscAI	CASTG	4 cut(s)	175, 604, 723, 769
TseFI	GTSAC	2 cut(s)	73, 866
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	73, 866
TspDTI	ATGAA	5 cut(s)	44, 78, 440, 527, 912
TspRI	CASTG	4 cut(s)	175, 604, 723, 769
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	171
XagI	CCTNNNNNAGG	2 cut(s)	120, 339
XapI	RAATTY	3 cut(s)	289, 534, 807
XceI	RCATGY	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	925
XspI	CTAG	2 cut(s)	122, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.