Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045066.1

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 556

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

gtgaagacagcataaagtggagctttatcaactcattgaaagaggcagcatatataataaatggaaactgcaagaaagtgatgaacatgtctcaacctgatcaggtggagctctggcgctctgttttacatggtaatttcgaagcctaccaacgggtatcttctaaacttaagcttggagcagttggggaaattgatgattctgggcaggtgaagcaagtccgagttccagttcggttatacgtttggaatgtcagtgaggactttgatgacttagaagatgcaccaccgattgatagttgggacaaagtttcttacataaaccggcctgtcgagatacaaggagaaggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

116

Amino Acids

13.23

Weight (kDa)

4.71

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	198
Acc36I	ACCTGC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	3 cut(s)	23, 111, 174
AluI	AGCT	3 cut(s)	23, 111, 174
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	222
AsuII	TTCGAA	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	323
BssMI	GATC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	323
CviAII	CATG	2 cut(s)	87, 130
CviJI	RGCY	5 cut(s)	23, 111, 145, 174, 327
CviKI_1	RGCY	5 cut(s)	23, 111, 145, 174, 327
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	2 cut(s)	90, 133
FaiI	YATR	8 cut(s)	13, 51, 53, 55, 88, 131, 240, 319
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	86, 129
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	47
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	90, 133
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	71, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	90, 133
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	20, 108, 178
LpnPI	CCDG	8 cut(s)	88, 99, 110, 188, 193, 242, 337, 341
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	1 cut(s)	242
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	16, 152, 289
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	2 cut(s)	135, 191
MnlI	CCTC	2 cut(s)	36, 252
MseI	TTAA	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	90, 133
NspI	RCATGY	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	198
PciI	ACATGT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	48
PscI	ACATGT	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	8 cut(s)	25, 99, 107, 113, 176, 212, 245, 351
SfaNI	GCATC	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	135, 191
SstI	GAGCTC	1 cut(s)	113
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	140, 332
TasI	AATT	2 cut(s)	135, 191
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	169
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.