Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

85928731 .. 85932842

Gene Structure 4112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTACAGATTCATCTCCACGAATCTGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCCTGATCTTAGCTCCTCGGGTAGGATACCTACCATTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAACCGGAGAGACCTTGGAATTTAACGGCAGCATATATAATCGATGGAAACTGCAAGGATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCTACGGGTATCTTCTAAACTTAAGCTTGGAGCATTTGGGGAAATGAAAGCTCAAGGCCGAGTTCCTGTTCGGTTATATGTTTGGTATGTCATTGAGGACTTTGATGACTTGGAAGATGCACCACCGATTGATAGTTGTGACAAAGTTTTTTACATAAACCAGCTTGTCGAGATACAAGGAGAACGAGGATGCTTCACTTTACATGATGCAGTGAAAAGCCTTCTGCCAGACTATTTTGTGGAGAAATCCTTGGGCACCGCTGAATCATTGACAGTGCAAAGAGTTTCATCCGAAGATGCCAGCGATGATAAAAAAGCCCAAGAGGAAGTAGAAACTTCATGCGACGATTGTGTAAAGGCTTGTTACGAATATGAAGAGCCTGAAATCAAGCTGACTGATGAAATTTGCAGCTTGAAATTGCATGAATCCATGATGCCAAACCTGGCAATCACCATTGATAACAGACTCTATATTCCCTTACCGTCGAGGTTTTTCAGGTTTTCGATCCTCTTCACCTGTCGTGGAAAACTCTCCCTCTTCCACCGTCTACATCTATCTCCGGACGCTTATGGAAGAGAATTGGATGCCGGCGGTTGGTTTACCGCGTCTGTCATGTGGCCCAAGGAGTTCCAAGGAATTCTAATCGGCATCCCAGCCTTAGTTAAGTGTCGAAAAATTGCCTTGGCCGCCCCCTCCACCGCCTGGGAATCTGTTTGTACGATCACTACCGCATCAACTATAGCCGATGCGGCCGACAAATGTGGAAGCAGTACTAACGACTACCACCATGAGGAACTGGTGAACGGATATTCTTTAGTTTCCTACGTTATAAAAGCCATAAATTTTAATGATCTCACGTCATCTCACAATTCAAATTCAAAATTAAGCCAAGTTGCTTCTACTAATTCTACTAATTCCGGCTGCCATCTTTGTCTCCATAGCTGTGGTGTCTTCAGCTCCCAAATTCTCTTTGCCGGCAGGGATGACGTCCTCCGAGTACGAGAAAAAATTGATACAGAATCAGAAGATAAAGTGGATGTGGCAGAATTACCTAGAAGGGACATTCTCGTGTTTGATGTGAGGTTAGATGATCCAAATCATCTAATGAATCTCAGCCATAGTTATAATAACTTGAAGCGGTTCACTAAATTTTTTGAAGGAATGAAACCTAAGCCGGTGCTGACGGAGATAAGAGGCAAACTCTATGCTCCTGTGGGTTGCCCAAAACCCCCGCATTTGAATCCGGGACGTCCCTTTATTGAGGTTCGACCCGAGAGAGAAGGAATATTTGGTCTCCACTGCCTGATCCTCCACCTTGTACTCTTTACGCTCCACTTGAGTACTTTAGACACCAACCACTGCTACTGTCATGCAATTGCGGGCACCAATATTCTAGTGATGAGTCACTCACTCACTCGTCTCCAGGAGTGTTTCGCTTTGACGTGGCAGCTGACCCGCTCAACCGGGACTGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

617

Amino Acids

69.09

Weight (kDa)

5.57

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 90	1.8e-18	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	90 - 132	1.4e-12	Autophagy protein ATG5, alpha-helical bundle region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1202, 1497
AatII	GACGTC	2 cut(s)	1362, 1624
AccB1I	GGYRCC	2 cut(s)	626, 1754
AccB7I	CCANNNNNTGG	1 cut(s)	1074
AccBSI	CCGCTC	1 cut(s)	1830
AccI	GTMKAC	1 cut(s)	919
AccII	CGCG	1 cut(s)	977
AccIII	TCCGGA	1 cut(s)	931
AclWI	GGATC	3 cut(s)	871, 1457, 1672
AcoI	YGGCCR	2 cut(s)	1056, 1122
AcsI	RAATTY	7 cut(s)	259, 774, 1008, 1213, 1246, 1335, 1520
AcuI	CTGAAG	3 cut(s)	90, 148, 1309
AcyI	GRCGYC	2 cut(s)	1359, 1621
AfaI	GTAC	5 cut(s)	1090, 1144, 1371, 1692, 1714
AfiI	CCNNNNNNNGG	6 cut(s)	122, 198, 375, 966, 1074, 1162
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	7 cut(s)	196, 787, 1245, 1251, 1507, 1529, 1612
AjiI	CACGTC	2 cut(s)	1230, 1815
AjnI	CCWGG	4 cut(s)	181, 813, 1073, 1794
AjuI	GAANNNNNNNTTGG	2 cut(s)	1644, 1676
Alw21I	GWGCWC	2 cut(s)	175, 336
Alw26I	GTCTC	6 cut(s)	244, 318, 1310, 1670, 1796, 1839
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	3 cut(s)	871, 1457, 1672
Ama87I	CYCGRG	2 cut(s)	117, 1643
Aor13HI	TCCGGA	1 cut(s)	931
AoxI	GGCC	5 cut(s)	141, 427, 989, 1056, 1122
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	4 cut(s)	269, 780, 1293, 1819
ApoI	RAATTY	7 cut(s)	259, 774, 1008, 1213, 1246, 1335, 1520
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
Asp700I	GAANNNNTTC	1 cut(s)	1511
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	990
AsuC2I	CCSGG	2 cut(s)	1617, 1837
AsuHPI	GGTGA	4 cut(s)	67, 814, 877, 1183
AvaI	CYCGRG	2 cut(s)	117, 1643
BaeGI	GKGCMC	3 cut(s)	175, 629, 1757
BanI	GGYRCC	2 cut(s)	626, 1754
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BauI	CACGAG	1 cut(s)	1439
BbsI	GAAGAC	1 cut(s)	1315
Bbv12I	GWGCWC	2 cut(s)	175, 336
BbvI	GCAGC	4 cut(s)	281, 792, 1280, 1831
BccI	CCATC	2 cut(s)	278, 1305
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	4 cut(s)	183, 815, 1075, 1796
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	1617, 1837
BcoDI	GTCTC	6 cut(s)	244, 318, 1310, 1670, 1796, 1839
BfaI	CTAG	2 cut(s)	1425, 1766
BfmI	CTRYAG	1 cut(s)	1110
BfoI	RGCGCY	1 cut(s)	343
BfrI	CTTAAG	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	1121
BisI	GCNGC	6 cut(s)	270, 781, 1059, 1122, 1294, 1820
BlsI	GCNGC	6 cut(s)	271, 782, 1060, 1123, 1295, 1821
BmcAI	AGTACT	2 cut(s)	1144, 1714
Bme1390I	CCNGG	6 cut(s)	183, 815, 1075, 1617, 1796, 1837
BmeT110I	CYCGRG	2 cut(s)	117, 1643
BmgBI	CACGTC	2 cut(s)	1230, 1815
BmgT120I	GGNCC	1 cut(s)	990
BmiI	GGNNCC	2 cut(s)	628, 1756
BmrFI	CCNGG	6 cut(s)	183, 815, 1075, 1617, 1796, 1837
BmsI	GCATC	9 cut(s)	478, 551, 568, 658, 795, 946, 1029, 1108, 1112
BpiI	GAAGAC	1 cut(s)	1315
BplI	GAGNNNNNCTC	2 cut(s)	1557, 1589
BpmI	CTGGAG	1 cut(s)	1778
Bpu10I	CCTNAGC	1 cut(s)	1542
BpuEI	CTTGAG	2 cut(s)	408, 1729
BpuMI	CCSGG	2 cut(s)	1617, 1837
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	1467
BsaHI	GRCGYC	2 cut(s)	1359, 1621
BsaI	GGTCTC	2 cut(s)	244, 1670
BsaJI	CCNNGG	7 cut(s)	116, 254, 621, 993, 1003, 1053, 1074
BsaWI	WCCGGW	2 cut(s)	244, 931
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 198, 375, 966, 1074, 1162
Bse118I	RCCGGY	3 cut(s)	959, 1346, 1546
Bse1I	ACTGG	2 cut(s)	1173, 1846
Bse8I	GATNNNNATC	1 cut(s)	1467
BseAI	TCCGGA	1 cut(s)	931
BseBI	CCWGG	4 cut(s)	183, 815, 1075, 1796
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	7 cut(s)	116, 254, 621, 993, 1003, 1053, 1074
BseGI	GGATG	7 cut(s)	304, 566, 659, 961, 1020, 1360, 1414
BseJI	GATNNNNATC	1 cut(s)	1467
BseLI	CCNNNNNNNGG	6 cut(s)	122, 198, 375, 966, 1074, 1162
BseMII	CTCAG	1 cut(s)	1498
BseNI	ACTGG	2 cut(s)	1173, 1846
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	3 cut(s)	175, 629, 1757
BseX3I	CGGCCG	1 cut(s)	1122
BseXI	GCAGC	4 cut(s)	281, 792, 1280, 1831
BseYI	CCCAGC	1 cut(s)	1024
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	977
Bsh1285I	CGRYCG	1 cut(s)	1125
BshFI	GGCC	5 cut(s)	143, 429, 991, 1058, 1124
BshNI	GGYRCC	2 cut(s)	626, 1754
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	1125
BsiHKAI	GWGCWC	2 cut(s)	175, 336
BsiHKCI	CYCGRG	2 cut(s)	117, 1643
BsiSI	CCGG	8 cut(s)	245, 932, 960, 1290, 1347, 1547, 1616, 1836
BslFI	GGGAC	3 cut(s)	1445, 1608, 1632
BslI	CCNNNNNNNGG	6 cut(s)	122, 198, 375, 966, 1074, 1162
BsmAI	GTCTC	6 cut(s)	244, 318, 1310, 1670, 1796, 1839
BsmBI	CGTCTC	1 cut(s)	1796
BsmFI	GGGAC	3 cut(s)	1445, 1608, 1632
BsnI	GGCC	5 cut(s)	143, 429, 991, 1058, 1124
Bso31I	GGTCTC	2 cut(s)	244, 1670
BsoBI	CYCGRG	2 cut(s)	117, 1643
Bsp1286I	GDGCHC	4 cut(s)	175, 336, 629, 1757
Bsp13I	TCCGGA	1 cut(s)	931
Bsp143I	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
BspANI	GGCC	5 cut(s)	143, 429, 991, 1058, 1124
BspCNI	CTCAG	1 cut(s)	1497
BspDI	ATCGAT	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	931
BspFNI	CGCG	1 cut(s)	977
BspLI	GGNNCC	2 cut(s)	628, 1756
BspPI	GGATC	3 cut(s)	871, 1457, 1672
BspQI	GCTCTTC	1 cut(s)	741
BspT107I	GGYRCC	2 cut(s)	626, 1754
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	244, 1670
BsrBI	CCGCTC	1 cut(s)	1830
BsrFI	RCCGGY	3 cut(s)	959, 1346, 1546
BsrI	ACTGG	2 cut(s)	1173, 1846
BssAI	RCCGGY	3 cut(s)	959, 1346, 1546
BssECI	CCNNGG	7 cut(s)	116, 254, 621, 993, 1003, 1053, 1074
BssMI	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
BssNI	GRCGYC	2 cut(s)	1359, 1621
BssSI	CACGAG	1 cut(s)	1439
BssT1I	CCWWGG	5 cut(s)	254, 621, 993, 1003, 1053
Bst2BI	CACGAG	1 cut(s)	1439
Bst2UI	CCWGG	4 cut(s)	183, 815, 1075, 1796
Bst4CI	ACNGT	4 cut(s)	646, 855, 917, 1739
Bst6I	CTCTTC	5 cut(s)	87, 741, 887, 914, 940
BstACI	GRCGYC	2 cut(s)	1359, 1621
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	5 cut(s)	188, 673, 961, 1348, 1753
BstDEI	CTNAG	4 cut(s)	109, 1030, 1484, 1542
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	7 cut(s)	304, 566, 659, 961, 1020, 1360, 1414
BstFNI	CGCG	1 cut(s)	977
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	8 cut(s)	108, 229, 325, 879, 1095, 1225, 1465, 1680
BstMAI	GTCTC	6 cut(s)	244, 318, 1310, 1670, 1796, 1839
BstMBI	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
BstMCI	CGRYCG	1 cut(s)	1125
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 1058, 1121
BstNI	CCWGG	4 cut(s)	183, 815, 1075, 1796
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	6 cut(s)	181, 813, 1073, 1615, 1794, 1835
BstSFI	CTRYAG	1 cut(s)	1110
BstSLI	GKGCMC	3 cut(s)	175, 629, 1757
BstUI	CGCG	1 cut(s)	977
BstV1I	GCAGC	4 cut(s)	281, 792, 1280, 1831
BstV2I	GAAGAC	1 cut(s)	1315
BstXI	CCANNNNNNTGG	1 cut(s)	1316
BstZI	CGGCCG	1 cut(s)	1122
Bsu15I	ATCGAT	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	5 cut(s)	143, 429, 991, 1058, 1124
BsuTUI	ATCGAT	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	690
BtrI	CACGTC	2 cut(s)	1230, 1815
BtsCI	GGATG	7 cut(s)	304, 566, 659, 961, 1020, 1360, 1414
BtsI	GCAGTG	4 cut(s)	175, 588, 1669, 1729
BtsIMutI	CAGTG	5 cut(s)	175, 588, 651, 1669, 1729
Cac8I	GCNNGC	5 cut(s)	188, 673, 961, 1348, 1753
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	3 cut(s)	959, 1346, 1546
Cfr13I	GGNCC	1 cut(s)	990
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	2 cut(s)	944, 966
Csp6I	GTAC	5 cut(s)	1089, 1143, 1370, 1691, 1713
CviAII	CATG	9 cut(s)	7, 310, 575, 711, 794, 802, 985, 1160, 1742
CviQI	GTAC	5 cut(s)	1089, 1143, 1370, 1691, 1713
DdeI	CTNAG	4 cut(s)	109, 1030, 1484, 1542
DpnI	GATC	8 cut(s)	107, 228, 324, 878, 1094, 1224, 1464, 1679
DpnII	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	2 cut(s)	1056, 1122
EagI	CGGCCG	1 cut(s)	1122
Eam1104I	CTCTTC	5 cut(s)	87, 741, 887, 914, 940
EarI	CTCTTC	5 cut(s)	87, 741, 887, 914, 940
Ecl136II	GAGCTC	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	1122
Eco130I	CCWWGG	5 cut(s)	254, 621, 993, 1003, 1053
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	2 cut(s)	244, 1670
Eco52I	CGGCCG	1 cut(s)	1122
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	3 cut(s)	90, 148, 1309
Eco88I	CYCGRG	2 cut(s)	117, 1643
EcoICRI	GAGCTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	1008
EcoRII	CCWGG	4 cut(s)	181, 813, 1073, 1794
EcoT14I	CCWWGG	5 cut(s)	254, 621, 993, 1003, 1053
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	5 cut(s)	254, 621, 993, 1003, 1053
Esp3I	CGTCTC	1 cut(s)	1796
FaeI	CATG	9 cut(s)	10, 313, 578, 714, 797, 805, 988, 1163, 1745
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	3 cut(s)	1445, 1608, 1632
FatI	CATG	9 cut(s)	6, 309, 574, 710, 793, 801, 984, 1159, 1741
FauI	CCCGC	4 cut(s)	106, 1611, 1744, 1835
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	919
Fnu4HI	GCNGC	6 cut(s)	270, 781, 1059, 1122, 1294, 1820
FokI	GGATG	7 cut(s)	311, 573, 646, 968, 1007, 1367, 1421
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	6 cut(s)	270, 781, 1059, 1122, 1294, 1820
FspBI	CTAG	2 cut(s)	1425, 1766
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	6 cut(s)	270, 781, 1059, 1122, 1294, 1820
GsaI	CCCAGC	1 cut(s)	1028
GsuI	CTGGAG	1 cut(s)	1778
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	5 cut(s)	143, 429, 991, 1058, 1124
HapII	CCGG	8 cut(s)	245, 932, 960, 1290, 1347, 1547, 1616, 1836
HgaI	GACGC	2 cut(s)	944, 966
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	2 cut(s)	1359, 1621
Hin1II	CATG	9 cut(s)	10, 313, 578, 714, 797, 805, 988, 1163, 1745
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	395
HpaII	CCGG	8 cut(s)	245, 932, 960, 1290, 1347, 1547, 1616, 1836
HphI	GGTGA	4 cut(s)	67, 814, 877, 1183
Hpy166II	GTNNAC	5 cut(s)	173, 920, 972, 1174, 1515
Hpy188I	TCNGA	4 cut(s)	70, 664, 1367, 1396
Hpy188III	TCNNGA	2 cut(s)	541, 932
Hpy8I	GTNNAC	5 cut(s)	173, 920, 972, 1174, 1515
Hpy99I	CGWCG	2 cut(s)	719, 859
HpyAV	CCTTC	6 cut(s)	26, 96, 602, 1422, 1523, 1646
HpyCH4III	ACNGT	4 cut(s)	646, 855, 917, 1739
HpyCH4IV	ACGT	5 cut(s)	1197, 1229, 1359, 1621, 1814
HpyCH4V	TGCA	9 cut(s)	173, 239, 294, 491, 581, 649, 780, 793, 1745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 1058, 1121
HpyF3I	CTNAG	4 cut(s)	109, 1030, 1484, 1542
HpySE526I	ACGT	5 cut(s)	1197, 1229, 1359, 1621, 1814
Hsp92I	GRCGYC	2 cut(s)	1359, 1621
Hsp92II	CATG	9 cut(s)	10, 313, 578, 714, 797, 805, 988, 1163, 1745
HspAI	GCGC	1 cut(s)	340
Kpn2I	TCCGGA	1 cut(s)	931
KroI	GCCGGC	2 cut(s)	959, 1346
KroNI	GCCGGC	2 cut(s)	961, 1348
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	7 cut(s)	35, 118, 331, 401, 1334, 1585, 1707
Lsp1109I	GCAGC	4 cut(s)	281, 792, 1280, 1831
LweI	GCATC	9 cut(s)	478, 551, 568, 658, 795, 946, 1029, 1108, 1112
MaeI	CTAG	2 cut(s)	1425, 1766
MaeII	ACGT	5 cut(s)	1197, 1229, 1359, 1621, 1814
MaeIII	GTNAC	4 cut(s)	73, 509, 734, 1775
MalI	GATC	8 cut(s)	107, 228, 324, 878, 1094, 1224, 1464, 1679
MbiI	CCGCTC	1 cut(s)	1830
MboI	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
MfeI	CAATTG	1 cut(s)	1746
MhlI	GDGCHC	4 cut(s)	175, 336, 629, 1757
MlyI	GAGTC	2 cut(s)	831, 1783
MroI	TCCGGA	1 cut(s)	931
MroNI	GCCGGC	2 cut(s)	959, 1346
MroXI	GAANNNNTTC	1 cut(s)	1511
MseI	TTAA	7 cut(s)	152, 263, 350, 393, 1035, 1218, 1256
MslI	CAYNNNNRTG	2 cut(s)	1314, 1439
MspA1I	CMGCKG	2 cut(s)	632, 1822
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	8 cut(s)	245, 932, 960, 1290, 1347, 1547, 1616, 1836
MspR9I	CCNGG	6 cut(s)	183, 815, 1075, 1617, 1796, 1837
MunI	CAATTG	1 cut(s)	1746
MvaI	CCWGG	4 cut(s)	183, 815, 1075, 1796
MvnI	CGCG	1 cut(s)	977
MwoI	GCNNNNNNNGC	3 cut(s)	154, 1058, 1121
NaeI	GCCGGC	2 cut(s)	961, 1348
NciI	CCSGG	2 cut(s)	1617, 1837
NdeII	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
NgoMIV	GCCGGC	2 cut(s)	959, 1346
NlaIII	CATG	9 cut(s)	10, 313, 578, 714, 797, 805, 988, 1163, 1745
NlaIV	GGNNCC	2 cut(s)	628, 1756
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	3 cut(s)	73, 509, 1775
NspI	RCATGY	1 cut(s)	313
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	741
PdiI	GCCGGC	2 cut(s)	961, 1348
PdmI	GAANNNNTTC	1 cut(s)	1511
PfeI	GAWTC	8 cut(s)	52, 65, 635, 797, 1079, 1391, 1480, 1612
PflMI	CCANNNNNTGG	1 cut(s)	1074
PfoI	TCCNGGA	2 cut(s)	1615, 1794
PkrI	GCNGC	6 cut(s)	271, 782, 1060, 1123, 1295, 1821
PleI	GAGTC	2 cut(s)	831, 1782
PpsI	GAGTC	2 cut(s)	831, 1782
PscI	ACATGT	1 cut(s)	309
PsiI	TTATAA	2 cut(s)	1202, 1497
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	4 cut(s)	181, 813, 1073, 1794
PspFI	CCCAGC	1 cut(s)	1024
PspGI	CCWGG	4 cut(s)	181, 813, 1073, 1794
PspN4I	GGNNCC	2 cut(s)	628, 1756
PspPI	GGNCC	1 cut(s)	990
PvuII	CAGCTG	1 cut(s)	1822
RsaI	GTAC	5 cut(s)	1090, 1144, 1371, 1692, 1714
RsaNI	GTAC	5 cut(s)	1089, 1143, 1370, 1691, 1713
RseI	CAYNNNNRTG	2 cut(s)	1314, 1439
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	7 cut(s)	152, 263, 350, 393, 1035, 1218, 1256
SatI	GCNGC	6 cut(s)	270, 781, 1059, 1122, 1294, 1820
Sau3AI	GATC	8 cut(s)	105, 226, 322, 876, 1092, 1222, 1462, 1677
Sau96I	GGNCC	1 cut(s)	990
ScaI	AGTACT	2 cut(s)	1144, 1714
SchI	GAGTC	2 cut(s)	831, 1783
ScrFI	CCNGG	6 cut(s)	183, 815, 1075, 1617, 1796, 1837
SduI	GDGCHC	4 cut(s)	175, 336, 629, 1757
SfaNI	GCATC	9 cut(s)	478, 551, 568, 658, 795, 946, 1029, 1108, 1112
SfcI	CTRYAG	1 cut(s)	1110
SmiMI	CAYNNNNRTG	2 cut(s)	1314, 1439
SmlI	CTYRAG	3 cut(s)	392, 423, 1708
SmoI	CTYRAG	3 cut(s)	392, 423, 1708
SspI	AATATT	2 cut(s)	1659, 1762
SspMI	CTAG	2 cut(s)	1425, 1766
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	6 cut(s)	181, 813, 1073, 1615, 1794, 1835
StyI	CCWWGG	5 cut(s)	254, 621, 993, 1003, 1053
TaaI	ACNGT	4 cut(s)	646, 855, 917, 1739
TaiI	ACGT	5 cut(s)	1200, 1232, 1362, 1624, 1817
TaqI	TCGA	6 cut(s)	282, 540, 857, 875, 1042, 1639
TatI	WGTACW	3 cut(s)	1142, 1690, 1712
TauI	GCSGC	2 cut(s)	1061, 1124
TfiI	GAWTC	8 cut(s)	52, 65, 635, 797, 1079, 1391, 1480, 1612
Tru1I	TTAA	7 cut(s)	152, 263, 350, 393, 1035, 1218, 1256
Tru9I	TTAA	7 cut(s)	152, 263, 350, 393, 1035, 1218, 1256
TscAI	CASTG	5 cut(s)	175, 588, 651, 1676, 1736
TseFI	GTSAC	3 cut(s)	73, 509, 1775
TseI	GCWGC	4 cut(s)	269, 780, 1293, 1819
Tsp45I	GTSAC	3 cut(s)	73, 509, 1775
TspGWI	ACGGA	2 cut(s)	1191, 1571
TspRI	CASTG	5 cut(s)	175, 588, 651, 1676, 1736
Van91I	CCANNNNNTGG	1 cut(s)	1074
Vha464I	CTTAAG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	7 cut(s)	259, 774, 1008, 1213, 1246, 1335, 1520
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	1511
XspI	CTAG	2 cut(s)	1425, 1766
ZraI	GACGTC	2 cut(s)	1360, 1622
ZrmI	AGTACT	2 cut(s)	1144, 1714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.