Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

85702361 .. 85703932

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG555300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAAGGAGCAATTCCTTACAGATTCATCTCCACGAATCCGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTACCATTGTTAGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAGAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAACCGGAGAGACCTTGGAATTTAACGGTGCATTTTAGAGGATATCCAGGAAACATATTGATCCGTTGTGAAGATGAAGATAGCATAAAGTGGAGCTTTATCAACTCATTAAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTGTCAACCTGATCAGATGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCTACGGGTATCTTCTAAACTTAAGCTTGGAGCATTTGGGGAAATGAACTCAAGCTCTCCAAGATCCCGATCGAGTATGGTGAAATTGATGTTTCTGGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

8.69

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	7 - 93	1.9e-25	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	107 - 163	2e-22	Autophagy protein ATG5, alpha-helical bundle region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	555
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	298, 522
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	95, 201, 468
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	154, 289
AluBI	AGCT	5 cut(s)	86, 339, 427, 490, 519
AluI	AGCT	5 cut(s)	86, 339, 427, 490, 519
Alw21I	GWGCWC	2 cut(s)	148, 429
Alw26I	GTCTC	1 cut(s)	247
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	298, 522
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	40, 556
BaeGI	GKGCMC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
Bbv12I	GWGCWC	2 cut(s)	148, 429
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	156, 291
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	436
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	2 cut(s)	156, 291
BmrFI	CCNGG	2 cut(s)	156, 291
BpuEI	CTTGAG	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	89, 257
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 201, 468
Bse8I	GATNNNNATC	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	156, 291
BseDI	CCNNGG	2 cut(s)	89, 257
BseJI	GATNNNNATC	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	95, 201, 468
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	536
BsiHKAI	GWGCWC	2 cut(s)	148, 429
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	95, 201, 468
BsmAI	GTCTC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	148, 429
Bsp143I	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
BspACI	CCGC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	298, 522
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	89, 257
BssMI	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	156, 291
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	6 cut(s)	81, 232, 306, 418, 530, 536
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	156, 291
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	154, 289
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	403
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	6 cut(s)	80, 231, 305, 417, 529, 535
DpnII	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	154, 289
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	1 cut(s)	406
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 323, 355
FatI	CATG	1 cut(s)	402
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	436
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	2 cut(s)	163, 410
HindII	GTYRAC	2 cut(s)	163, 410
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	25, 38
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	40, 556
Hpy166II	GTNNAC	3 cut(s)	146, 163, 410
Hpy188I	TCNGA	2 cut(s)	43, 420
Hpy188III	TCNNGA	1 cut(s)	531
Hpy8I	GTNNAC	3 cut(s)	146, 163, 410
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	146, 242, 274, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
LmnI	GCTCC	5 cut(s)	9, 91, 336, 424, 494
Lsp1109I	GCAGC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	6 cut(s)	80, 231, 305, 417, 529, 535
MboI	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
MboII	GAAGA	5 cut(s)	47, 224, 326, 332, 468
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	2 cut(s)	148, 429
MluCI	AATT	4 cut(s)	13, 262, 451, 548
MnlI	CCTC	6 cut(s)	99, 127, 162, 179, 275, 352
MseI	TTAA	5 cut(s)	125, 266, 353, 443, 486
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	156, 291
MvaI	CCWGG	2 cut(s)	156, 291
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
NlaIII	CATG	1 cut(s)	406
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	555
PciI	ACATGT	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	25, 38
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	364
Ple19I	CGATCG	1 cut(s)	536
PscI	ACATGT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	154, 289
PspGI	CCWGG	2 cut(s)	154, 289
PsuI	RGATCY	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	5 cut(s)	125, 266, 353, 443, 486
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	6 cut(s)	78, 229, 303, 415, 527, 533
ScrFI	CCNGG	2 cut(s)	156, 291
SduI	GDGCHC	2 cut(s)	148, 429
SmlI	CTYRAG	2 cut(s)	485, 514
SmoI	CTYRAG	2 cut(s)	485, 514
Sse9I	AATT	4 cut(s)	13, 262, 451, 548
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	154, 289
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	177, 536
TasI	AATT	4 cut(s)	13, 262, 451, 548
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	25, 38
Tru1I	TTAA	5 cut(s)	125, 266, 353, 443, 486
Tru9I	TTAA	5 cut(s)	125, 266, 353, 443, 486
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	17, 333, 413, 524
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.