RLG00000002214

autophagy protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
29713028 .. 29718254
5227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002214

Sequence Viewer

Length: 1089 bp
ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTGCAGATTCATCTCCACGAATCCGAAGTTACGACTCTACCTTCTCCCCCGCCCGCCCTGATCTTAGCTCCTCGGCTAGGGTACCTACCATTGTTGGCCTCGCATCTGAAGCCTTACTTCAGCACTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGACTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTTTGTGCAGAACCAGAGAGACCTTGGAATTTAACGGTTCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAACTTTATTAACTCATTGAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCGACGGGTATCTTCTAAACTTAAGCTTGAAGCCGTTGGGGAAATGAACTCGAGCTCGCCAAGATCCCGATCGAGTGTGGGTGAAGTTGATGTTTCTGGGCAGGTGAAGCCAGGCCGAGTTCCAGTTCGGTTATATGTTTGGAATGTCAGTGAGGACTTTGATGACTTAGAAGATGCACCACCGATTGAAAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTCGAGATACAAGAAGGTAGATGCTTCACTTTACATGATGCAGTGAAGAGCCTTCTGCCAGACTATTTTGTGGTCAAATCCTTGGGCACTGCTGAATCACAGACAGTAGCTGGTGATGATGAGCAGAGAGTTTCATCTGAAGATGCAAGTGATGATAAAAAAGCTGAAGAGGAAGTAGAAACTTCATCTGATGACCATGTAAAGGCTAGTTATGAATATGAAGAGCCCGAAATCAAGCTGGTTCGTATACAAGGTATTGAACCAAAACTGGAGATACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCTGAGCACTTTCTTCATATTTGTGTATATTTGAAAGTACCACAAGTCAATAATACTATGTCATAG

Protein Analysis

363

Amino Acids

40.95

Weight (kDa)

4.84

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG5_UblA PF20638 9 - 102 4.7e-29 Autophagy protein ATG5, UblA domain
ATG5_HBR PF20637 116 - 172 1.7e-23 Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB PF04106 203 - 350 3.1e-19 Autophagy protein ATG5, UblB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 961
AciI CCGC 2 cut(s) 95, 99
AclWI GGATC 2 cut(s) 325, 549
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 4 cut(s) 148, 173, 873, 900
AfaI GTAC 2 cut(s) 128, 1062
AfiI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 6 cut(s) 226, 382, 521, 680, 974, 1057
AjnI CCWGG 3 cut(s) 181, 316, 601
AluBI AGCT 7 cut(s) 113, 454, 517, 546, 824, 878, 952
AluI AGCT 7 cut(s) 113, 454, 517, 546, 824, 878, 952
Alw21I GWGCWC 3 cut(s) 456, 548, 1032
Alw26I GTCTC 2 cut(s) 274, 438
AlwI GGATC 2 cut(s) 325, 549
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 3 cut(s) 141, 604, 710
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 4 cut(s) 356, 584, 607, 839
AvaI CYCGRG 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 803
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 3 cut(s) 456, 548, 942
Bbv12I GWGCWC 3 cut(s) 456, 548, 1032
BbvI GCAGC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 3 cut(s) 183, 318, 603
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 274, 438
BfaI CTAG 2 cut(s) 122, 921
BfoI RGCGCY 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 183, 318, 603
BmeT110I CYCGRG 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 3 cut(s) 183, 318, 603
BmsI GCATC 5 cut(s) 157, 655, 725, 742, 847
BpmI CTGGAG 1 cut(s) 1004
Bpu10I CCTNAGC 1 cut(s) 1026
BsaBI GATNNNNATC 1 cut(s) 559
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 116, 284, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 2 cut(s) 614, 987
Bse8I GATNNNNATC 1 cut(s) 559
BseBI CCWGG 3 cut(s) 183, 318, 603
BseDI CCNNGG 3 cut(s) 116, 284, 795
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
BseMII CTCAG 1 cut(s) 1017
BseNI ACTGG 2 cut(s) 614, 987
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 1 cut(s) 401
BsgI GTGCAG 2 cut(s) 156, 288
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 3 cut(s) 143, 606, 712
BshNI GGYRCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 563
BsiHKAI GWGCWC 3 cut(s) 456, 548, 1032
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 5 cut(s) 122, 228, 341, 495, 916
BsmAI GTCTC 2 cut(s) 274, 438
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 3 cut(s) 143, 606, 712
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 5 cut(s) 456, 548, 803, 942, 1032
Bsp143I GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BspACI CCGC 2 cut(s) 95, 99
BspANI GGCC 3 cut(s) 143, 606, 712
BspCNI CTCAG 1 cut(s) 1018
BspLI GGNNCC 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 325, 549
BspQI GCTCTTC 2 cut(s) 755, 930
BspT107I GGYRCC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 708
BsrI ACTGG 2 cut(s) 614, 987
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 116, 284, 795
BssMI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BssNAI GTATAC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 284, 795
Bst1107I GTATAC 1 cut(s) 962
Bst2UI CCWGG 3 cut(s) 183, 318, 603
Bst4CI ACNGT 2 cut(s) 298, 820
Bst6I CTCTTC 3 cut(s) 755, 876, 930
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 99, 218, 548
BstDEI CTNAG 3 cut(s) 109, 658, 1026
BstENI CCTNNNNNAGG 2 cut(s) 120, 339
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 6 cut(s) 108, 259, 333, 445, 557, 563
BstMAI GTCTC 2 cut(s) 274, 438
BstMBI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 3 cut(s) 154, 598, 1027
BstNI CCWGG 3 cut(s) 183, 318, 603
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 3 cut(s) 181, 316, 601
BstSLI GKGCMC 1 cut(s) 803
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 554
BstXI CCANNNNNNTGG 1 cut(s) 999
BstYI RGATCY 1 cut(s) 554
BstZ17I GTATAC 1 cut(s) 962
BsuRI GGCC 3 cut(s) 143, 606, 712
BtsI GCAGTG 3 cut(s) 168, 762, 801
BtsIMutI CAGTG 4 cut(s) 168, 646, 762, 801
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 99, 218, 548
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 1 cut(s) 462
Cfr10I RCCGGY 1 cut(s) 708
Csp6I GTAC 2 cut(s) 127, 1061
CviAII CATG 4 cut(s) 7, 430, 749, 911
CviQI GTAC 2 cut(s) 127, 1061
DdeI CTNAG 3 cut(s) 109, 658, 1026
DpnI GATC 6 cut(s) 107, 258, 332, 444, 556, 562
DpnII GATC 6 cut(s) 105, 256, 330, 442, 554, 560
Eam1104I CTCTTC 3 cut(s) 755, 876, 930
EarI CTCTTC 3 cut(s) 755, 876, 930
Ecl136II GAGCTC 2 cut(s) 454, 546
Eco130I CCWWGG 2 cut(s) 284, 795
Eco24I GRGCYC 3 cut(s) 456, 548, 942
Eco31I GGTCTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 314
Eco53kI GAGCTC 2 cut(s) 454, 546
Eco57I CTGAAG 4 cut(s) 148, 173, 873, 900
Eco88I CYCGRG 1 cut(s) 541
EcoICRI GAGCTC 2 cut(s) 454, 546
EcoNI CCTNNNNNAGG 2 cut(s) 120, 339
EcoRII CCWGG 3 cut(s) 181, 316, 601
EcoRV GATATC 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 284, 795
EcoT38I GRGCYC 3 cut(s) 456, 548, 942
ErhI CCWWGG 2 cut(s) 284, 795
FaeI CATG 4 cut(s) 10, 433, 752, 914
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 350, 382
FaqI GGGAC 1 cut(s) 701
FatI CATG 4 cut(s) 6, 429, 748, 910
FauI CCCGC 2 cut(s) 102, 106
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 961
Fnu4HI GCNGC 1 cut(s) 390
FriOI GRGCYC 3 cut(s) 456, 548, 942
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 122, 921
GlaI GCGC 1 cut(s) 461
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 1004
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 3 cut(s) 143, 606, 712
HapII CCGG 1 cut(s) 709
HhaI GCGC 1 cut(s) 462
Hin1II CATG 4 cut(s) 10, 433, 752, 914
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 52, 65, 79, 809
HpaII CCGG 1 cut(s) 709
HphI GGTGA 4 cut(s) 356, 584, 607, 839
Hpy166II GTNNAC 2 cut(s) 190, 962
Hpy188I TCNGA 4 cut(s) 70, 153, 853, 904
Hpy188III TCNNGA 2 cut(s) 558, 718
Hpy8I GTNNAC 2 cut(s) 190, 962
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 5 cut(s) 26, 96, 335, 722, 776
HpyCH4III ACNGT 2 cut(s) 298, 820
HpyCH4V TGCA 8 cut(s) 49, 173, 269, 414, 668, 755, 860, 1021
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 598, 1027
HpyF3I CTNAG 3 cut(s) 109, 658, 1026
Hsp92II CATG 4 cut(s) 10, 433, 752, 914
HspAI GCGC 1 cut(s) 460
KpnI GGTACC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 105, 256, 330, 442, 554, 560
LguI GCTCTTC 2 cut(s) 755, 930
LmnI GCTCC 3 cut(s) 35, 118, 451
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 5 cut(s) 157, 655, 725, 742, 847
MaeI CTAG 2 cut(s) 122, 921
MaeIII GTNAC 1 cut(s) 73
MalI GATC 6 cut(s) 107, 258, 332, 444, 556, 562
MboI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
MboII GAAGA 9 cut(s) 251, 359, 495, 674, 772, 866, 893, 947, 1028
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 5 cut(s) 456, 548, 803, 942, 1032
MluCI AATT 3 cut(s) 39, 289, 478
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 8 cut(s) 12, 126, 154, 189, 302, 379, 637, 877
MseI TTAA 5 cut(s) 293, 372, 470, 513, 1016
MslI CAYNNNNRTG 1 cut(s) 1044
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 3 cut(s) 183, 318, 603
MvaI CCWGG 3 cut(s) 183, 318, 603
MwoI GCNNNNNNNGC 3 cut(s) 154, 598, 1027
NdeII GATC 6 cut(s) 105, 256, 330, 442, 554, 560
NlaIII CATG 4 cut(s) 10, 433, 752, 914
NlaIV GGNNCC 1 cut(s) 128
NmeAIII GCCGAG 2 cut(s) 97, 632
NspI RCATGY 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 583
PciI ACATGT 1 cut(s) 429
PciSI GCTCTTC 2 cut(s) 755, 930
PfeI GAWTC 3 cut(s) 52, 65, 809
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 391
Ple19I CGATCG 1 cut(s) 563
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 1 cut(s) 429
Psp124BI GAGCTC 2 cut(s) 456, 548
Psp6I CCWGG 3 cut(s) 181, 316, 601
PspGI CCWGG 3 cut(s) 181, 316, 601
PspN4I GGNNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 554
PvuI CGATCG 1 cut(s) 563
RsaI GTAC 2 cut(s) 128, 1062
RsaNI GTAC 2 cut(s) 127, 1061
RseI CAYNNNNRTG 1 cut(s) 1044
SacI GAGCTC 2 cut(s) 456, 548
SapI GCTCTTC 2 cut(s) 755, 930
SaqAI TTAA 5 cut(s) 293, 372, 470, 513, 1016
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 6 cut(s) 105, 256, 330, 442, 554, 560
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 3 cut(s) 183, 318, 603
SduI GDGCHC 5 cut(s) 456, 548, 803, 942, 1032
SfaNI GCATC 5 cut(s) 157, 655, 725, 742, 847
Sfr274I CTCGAG 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 2 cut(s) 512, 541
SmoI CTYRAG 2 cut(s) 512, 541
Sse9I AATT 3 cut(s) 39, 289, 478
SsiI CCGC 2 cut(s) 95, 99
SspMI CTAG 2 cut(s) 122, 921
SstI GAGCTC 2 cut(s) 456, 548
StyD4I CCNGG 3 cut(s) 181, 316, 601
StyI CCWWGG 2 cut(s) 284, 795
TaaI ACNGT 2 cut(s) 298, 820
TaqI TCGA 4 cut(s) 204, 542, 563, 717
TasI AATT 3 cut(s) 39, 289, 478
TfiI GAWTC 3 cut(s) 52, 65, 809
Tru1I TTAA 5 cut(s) 293, 372, 470, 513, 1016
Tru9I TTAA 5 cut(s) 293, 372, 470, 513, 1016
TscAI CASTG 4 cut(s) 175, 646, 762, 808
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 9 cut(s) 44, 290, 440, 551, 837, 888, 942, 948, 1028
TspRI CASTG 4 cut(s) 175, 646, 762, 808
Vha464I CTTAAG 1 cut(s) 512
XagI CCTNNNNNAGG 2 cut(s) 120, 339
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 961
XspI CTAG 2 cut(s) 122, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.