Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

74637156 .. 74638518

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGCCCAGAGCTTTTTATGGAAAGGAGCAATTCCTTTGCAGATTCATCTCCATGAATCCGAAGTCACCACTCTTCCTTCTCCCCCACCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTTCCGTTGTTGGCCTCTCATTTAAAGCCTTTCTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAAGCAGAGAGACCTTGGAATTTAACGGTGCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGACAGCATAAAGTGGAGCTTTATCAACTCATTGAAAGAGGCAGCATATATAATAAAAGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTTTTACATGGTAATTTCGAAGCCTACCAACGGGTATCTTCTAAACTTAAGCTTGGAGCAGTTGGGGAAATTGATGTTTCTGGGCAGGTGAAGCAAAACCGAGTTCCAGTTCGGTTATACGTTTGGAATGTCAGTGAGGACTTTGATGACTTAGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTCGAGATACAAGGAGAAGGTAGATGCTTCACTTTATATGATGCAGTGAAAAGCCTTCTGCCGGACTATTTTGTGGACAAATCGTTGGGCACTACTGAATCATTGACAGTAGGTCGTGATGATGACAAGCCTAAAATCAAGCTGGTTCGTATACAAGACCGAAGAGTGGATGCCACAGCTGCGGCAGCACCGGTCAGAACTCCCCGCTCGTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

294

Amino Acids

33.14

Weight (kDa)

5.8

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	7 - 100	2.3e-29	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	114 - 170	7.4e-23	Autophagy protein ATG5, alpha-helical bundle region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	873
AccI	GTMKAC	1 cut(s)	817
AciI	CCGC	3 cut(s)	93, 848, 871
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	116, 222, 335, 489, 727, 832
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	856
AgsI	TTSAA	2 cut(s)	220, 376
AhdI	GACNNNNNGTC	1 cut(s)	777
AjnI	CCWGG	2 cut(s)	175, 310
AluBI	AGCT	7 cut(s)	15, 107, 360, 448, 511, 808, 845
AluI	AGCT	7 cut(s)	15, 107, 360, 448, 511, 808, 845
Alw21I	GWGCWC	2 cut(s)	169, 450
Alw26I	GTCTC	2 cut(s)	268, 432
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	135, 662
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	383, 845, 851
ApoI	RAATTY	1 cut(s)	283
AsiGI	ACCGGT	1 cut(s)	856
AspLEI	GCGC	1 cut(s)	456
AsuHPI	GGTGA	3 cut(s)	61, 350, 559
AsuII	TTCGAA	1 cut(s)	477
BaeGI	GKGCMC	2 cut(s)	169, 758
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	169, 450
BbvI	GCAGC	3 cut(s)	395, 832, 863
BciT130I	CCWGG	2 cut(s)	177, 312
BciVI	GTATCC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	268, 432
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	457
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	4 cut(s)	384, 846, 849, 852
BlsI	GCNGC	4 cut(s)	385, 847, 850, 853
Bme1390I	CCNGG	2 cut(s)	177, 312
BmeRI	GACNNNNNGTC	1 cut(s)	777
BmrFI	CCNGG	2 cut(s)	177, 312
BmsI	GCATC	4 cut(s)	607, 680, 697, 826
BpiI	GAAGAC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	110, 278
BsaWI	WCCGGW	1 cut(s)	856
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 222, 335, 489, 727, 832
Bse118I	RCCGGY	2 cut(s)	660, 856
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	2 cut(s)	177, 312
BseDI	CCNNGG	2 cut(s)	110, 278
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	6 cut(s)	116, 222, 335, 489, 727, 832
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	2 cut(s)	169, 758
BseXI	GCAGC	3 cut(s)	395, 832, 863
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	137, 664
BshTI	ACCGGT	1 cut(s)	856
BsiHKAI	GWGCWC	2 cut(s)	169, 450
BsiSI	CCGG	3 cut(s)	661, 728, 857
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	6 cut(s)	116, 222, 335, 489, 727, 832
BsmAI	GTCTC	2 cut(s)	268, 432
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	137, 664
Bso31I	GGTCTC	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	169, 450, 758
Bsp143I	GATC	4 cut(s)	99, 250, 324, 436
BspACI	CCGC	3 cut(s)	93, 848, 871
BspANI	GGCC	2 cut(s)	137, 664
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	2 cut(s)	660, 856
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	2 cut(s)	660, 856
BssECI	CCNNGG	2 cut(s)	110, 278
BssMI	GATC	4 cut(s)	99, 250, 324, 436
BssNAI	GTATAC	1 cut(s)	818
BssT1I	CCWWGG	1 cut(s)	278
Bst1107I	GTATAC	1 cut(s)	818
Bst2UI	CCWGG	2 cut(s)	177, 312
Bst4CI	ACNGT	2 cut(s)	292, 775
Bst6I	CTCTTC	2 cut(s)	81, 823
BstAFI	CTTAAG	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	103, 610
BstENI	CCTNNNNNAGG	2 cut(s)	114, 333
BstF5I	GGATG	1 cut(s)	841
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	4 cut(s)	102, 253, 327, 439
BstMAI	GTCTC	2 cut(s)	268, 432
BstMBI	GATC	4 cut(s)	99, 250, 324, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	550, 845, 851
BstNI	CCWGG	2 cut(s)	177, 312
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	175, 310
BstSLI	GKGCMC	2 cut(s)	169, 758
BstV1I	GCAGC	3 cut(s)	395, 832, 863
BstV2I	GAAGAC	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	818
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	137, 664
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	2 cut(s)	169, 717
BtsIMutI	CAGTG	3 cut(s)	169, 598, 717
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	2 cut(s)	660, 856
Csp6I	GTAC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	856
CviAII	CATG	3 cut(s)	56, 424, 467
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	103, 610
DpnI	GATC	4 cut(s)	101, 252, 326, 438
DpnII	GATC	4 cut(s)	99, 250, 324, 436
DraI	TTTAAA	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	81, 823
Eam1105I	GACNNNNNGTC	1 cut(s)	777
EarI	CTCTTC	2 cut(s)	81, 823
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	2 cut(s)	114, 333
EcoRII	CCWGG	2 cut(s)	175, 310
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	3 cut(s)	59, 427, 470
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 344, 376
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	3 cut(s)	55, 423, 466
FauI	CCCGC	2 cut(s)	100, 878
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	4 cut(s)	384, 846, 849, 852
FokI	GGATG	1 cut(s)	848
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	4 cut(s)	384, 846, 849, 852
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	4 cut(s)	384, 846, 849, 852
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	137, 664
HapII	CCGG	3 cut(s)	661, 728, 857
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	59, 427, 470
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	46, 59, 764
HpaII	CCGG	3 cut(s)	661, 728, 857
HphI	GGTGA	3 cut(s)	61, 350, 559
Hpy166II	GTNNAC	4 cut(s)	167, 184, 742, 818
Hpy188I	TCNGA	2 cut(s)	64, 863
Hpy188III	TCNNGA	2 cut(s)	670, 782
Hpy8I	GTNNAC	4 cut(s)	167, 184, 742, 818
HpyAV	CCTTC	5 cut(s)	90, 134, 329, 677, 731
HpyCH4III	ACNGT	2 cut(s)	292, 775
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	7 cut(s)	43, 167, 263, 295, 408, 620, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	550, 845, 851
HpyF3I	CTNAG	2 cut(s)	103, 610
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	59, 427, 470
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	99, 250, 324, 436
LmnI	GCTCC	5 cut(s)	29, 112, 357, 445, 515
Lsp1109I	GCAGC	3 cut(s)	395, 832, 863
LweI	GCATC	4 cut(s)	607, 680, 697, 826
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	101, 252, 326, 438
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	4 cut(s)	99, 250, 324, 436
MboII	GAAGA	7 cut(s)	68, 148, 245, 353, 489, 626, 840
MhlI	GDGCHC	3 cut(s)	169, 450, 758
MluCI	AATT	4 cut(s)	33, 283, 472, 528
MnlI	CCTC	6 cut(s)	120, 148, 183, 296, 373, 589
MseI	TTAA	3 cut(s)	146, 287, 507
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	3 cut(s)	661, 728, 857
MspR9I	CCNGG	2 cut(s)	177, 312
MvaI	CCWGG	2 cut(s)	177, 312
MwoI	GCNNNNNNNGC	3 cut(s)	550, 845, 851
NdeII	GATC	4 cut(s)	99, 250, 324, 436
NlaIII	CATG	3 cut(s)	59, 427, 470
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	477
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	46, 59, 764
PfoI	TCCNGGA	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	856
PkrI	GCNGC	4 cut(s)	385, 847, 850, 853
PscI	ACATGT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	175, 310
PspGI	CCWGG	2 cut(s)	175, 310
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	146, 287, 507
SatI	GCNGC	4 cut(s)	384, 846, 849, 852
Sau3AI	GATC	4 cut(s)	99, 250, 324, 436
ScrFI	CCNGG	2 cut(s)	177, 312
SduI	GDGCHC	3 cut(s)	169, 450, 758
SfaNI	GCATC	4 cut(s)	607, 680, 697, 826
SfuI	TTCGAA	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	33, 283, 472, 528
SsiI	CCGC	3 cut(s)	93, 848, 871
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	175, 310
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	292, 775
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	198, 477, 669
TaqII	GACCGA	1 cut(s)	840
TasI	AATT	4 cut(s)	33, 283, 472, 528
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	3 cut(s)	46, 59, 764
Tru1I	TTAA	3 cut(s)	146, 287, 507
Tru9I	TTAA	3 cut(s)	146, 287, 507
TscAI	CASTG	3 cut(s)	169, 598, 717
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	383, 845, 851
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	38, 72, 434
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	3 cut(s)	169, 598, 717
Vha464I	CTTAAG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	165
XagI	CCTNNNNNAGG	2 cut(s)	114, 333
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	817
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.