Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

32476709 .. 32482161

Gene Structure 5453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTGCAGATTCATCTCCACGAATCCGAAGTCACGACTCTTCCTTCTCCCCCGCCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTACCATTGTTGGCCTCGCATCTAAAGCCTTACTTCAGCACCGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGACTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTTTGTGCAGAACCAGAGAGACCTTGGAATTTAACGGTTCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAACTTTATTAACTCATTGAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCGACGGGTATCTTCTAAACTTAAGCTTGAAGCCGTTGGGGAAATGAACTCGAGCTCGCCAAGATCCCGATCAAGTATGGGTGAAGTTGATGTTTCTGGGCAGGCGAAGCCAGGCCGAGTTCCAGTTCGGTTATATGTTTGGAATGTCAGTGAGGACTTTGATGACTTAGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTTGAGATACAAGAAGTGAAGAGCCTTCTGCCAGACTATTTTGTGGTCAAATCCTTGGGCACTGCTGAGTCACTGACAGTAGTTGGTGATGACGAGCAAAGAGTTTCATCCGAAGATGCAAGCGATGATAAAAAAGCCGAAGAGGAAGTAGAAACTTCATCTGATGACCATGTAAAGGTTAGTTACGAACATGAAGAGCCCGAAATCAAGCTGGTTCGTATACAAGGTATTGAACCAAAACTGGAGATACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCCGAGTACTTTCTTCATATCTCTGTATATTTGAAAGTACCACAAGTCAATAATACTATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

351

Amino Acids

39.72

Weight (kDa)

4.82

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	7 - 100	4.4e-29	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	114 - 170	1.6e-23	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	201 - 339	2.3e-11	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	928
AciI	CCGC	3 cut(s)	89, 93, 165
AclWI	GGATC	2 cut(s)	319, 543
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	998, 1029
AfiI	CCNNNNNNNGG	5 cut(s)	116, 222, 335, 489, 883
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	5 cut(s)	220, 376, 515, 941, 1024
AjnI	CCWGG	3 cut(s)	175, 310, 595
AluBI	AGCT	5 cut(s)	107, 448, 511, 540, 919
AluI	AGCT	5 cut(s)	107, 448, 511, 540, 919
Alw21I	GWGCWC	2 cut(s)	450, 542
Alw26I	GTCTC	2 cut(s)	268, 432
AlwI	GGATC	2 cut(s)	319, 543
Ama87I	CYCGRG	2 cut(s)	535, 992
AoxI	GGCC	3 cut(s)	135, 598, 704
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AspLEI	GCGC	1 cut(s)	456
AsuHPI	GGTGA	3 cut(s)	350, 578, 806
AvaI	CYCGRG	2 cut(s)	535, 992
BaeGI	GKGCMC	1 cut(s)	770
BanII	GRGCYC	3 cut(s)	450, 542, 909
Bbv12I	GWGCWC	2 cut(s)	450, 542
BbvI	GCAGC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	177, 312, 597
BciVI	GTATCC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	268, 432
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	457
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	3 cut(s)	177, 312, 597
BmeT110I	CYCGRG	2 cut(s)	535, 992
BmrFI	CCNGG	3 cut(s)	177, 312, 597
BmsI	GCATC	3 cut(s)	151, 649, 814
BpmI	CTGGAG	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	110, 278, 762
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 222, 335, 489, 883
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	2 cut(s)	608, 954
Bse8I	GATNNNNATC	1 cut(s)	553
BseBI	CCWGG	3 cut(s)	177, 312, 597
BseDI	CCNNGG	3 cut(s)	110, 278, 762
BseGI	GGATG	1 cut(s)	815
BseJI	GATNNNNATC	1 cut(s)	553
BseLI	CCNNNNNNNGG	5 cut(s)	116, 222, 335, 489, 883
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	2 cut(s)	608, 954
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	770
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	137, 600, 706
BsiHKAI	GWGCWC	2 cut(s)	450, 542
BsiHKCI	CYCGRG	2 cut(s)	535, 992
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	5 cut(s)	116, 222, 335, 489, 883
BsmAI	GTCTC	2 cut(s)	268, 432
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	137, 600, 706
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	2 cut(s)	535, 992
Bsp1286I	GDGCHC	4 cut(s)	450, 542, 770, 909
Bsp143I	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
BspACI	CCGC	3 cut(s)	89, 93, 165
BspANI	GGCC	3 cut(s)	137, 600, 706
BspCNI	CTCAG	1 cut(s)	766
BspPI	GGATC	2 cut(s)	319, 543
BspQI	GCTCTTC	2 cut(s)	722, 897
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	2 cut(s)	608, 954
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	110, 278, 762
BssMI	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
BssNAI	GTATAC	1 cut(s)	929
BssT1I	CCWWGG	2 cut(s)	278, 762
Bst1107I	GTATAC	1 cut(s)	929
Bst2UI	CCWGG	3 cut(s)	177, 312, 597
Bst4CI	ACNGT	2 cut(s)	292, 787
Bst6I	CTCTTC	4 cut(s)	81, 722, 843, 897
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	5 cut(s)	93, 212, 542, 588, 829
BstDEI	CTNAG	3 cut(s)	103, 652, 774
BstENI	CCTNNNNNAGG	2 cut(s)	114, 333
BstF5I	GGATG	1 cut(s)	815
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	6 cut(s)	102, 253, 327, 439, 551, 557
BstMAI	GTCTC	2 cut(s)	268, 432
BstMBI	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 592
BstNI	CCWGG	3 cut(s)	177, 312, 597
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	175, 310, 595
BstSLI	GKGCMC	1 cut(s)	770
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	1 cut(s)	548
BstZ17I	GTATAC	1 cut(s)	929
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	137, 600, 706
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	1 cut(s)	815
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	640, 768, 779
Cac8I	GCNNGC	5 cut(s)	93, 212, 542, 588, 829
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	702
Csp6I	GTAC	2 cut(s)	997, 1028
CviAII	CATG	3 cut(s)	424, 878, 899
CviQI	GTAC	2 cut(s)	997, 1028
DdeI	CTNAG	3 cut(s)	103, 652, 774
DpnI	GATC	6 cut(s)	101, 252, 326, 438, 550, 556
DpnII	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
Eam1104I	CTCTTC	4 cut(s)	81, 722, 843, 897
EarI	CTCTTC	4 cut(s)	81, 722, 843, 897
Ecl136II	GAGCTC	2 cut(s)	448, 540
Eco130I	CCWWGG	2 cut(s)	278, 762
Eco24I	GRGCYC	3 cut(s)	450, 542, 909
Eco31I	GGTCTC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	308
Eco53kI	GAGCTC	2 cut(s)	448, 540
Eco57I	CTGAAG	1 cut(s)	142
Eco88I	CYCGRG	2 cut(s)	535, 992
EcoICRI	GAGCTC	2 cut(s)	448, 540
EcoNI	CCTNNNNNAGG	2 cut(s)	114, 333
EcoRII	CCWGG	3 cut(s)	175, 310, 595
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	278, 762
EcoT38I	GRGCYC	3 cut(s)	450, 542, 909
ErhI	CCWWGG	2 cut(s)	278, 762
FaeI	CATG	3 cut(s)	427, 881, 902
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 344, 376
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	3 cut(s)	423, 877, 898
FauI	CCCGC	2 cut(s)	96, 100
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	3 cut(s)	450, 542, 909
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	971
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	137, 600, 706
HapII	CCGG	1 cut(s)	703
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	427, 881, 902
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	46, 59, 73, 776
HpaII	CCGG	1 cut(s)	703
HphI	GGTGA	3 cut(s)	350, 578, 806
Hpy166II	GTNNAC	2 cut(s)	184, 929
Hpy188I	TCNGA	3 cut(s)	64, 820, 871
Hpy188III	TCNNGA	2 cut(s)	70, 552
Hpy8I	GTNNAC	2 cut(s)	184, 929
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	20, 90, 329, 743
HpyCH4III	ACNGT	2 cut(s)	292, 787
HpyCH4V	TGCA	6 cut(s)	43, 263, 408, 662, 827, 988
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 592
HpyF3I	CTNAG	3 cut(s)	103, 652, 774
Hsp92II	CATG	3 cut(s)	427, 881, 902
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
LguI	GCTCTTC	2 cut(s)	722, 897
LmnI	GCTCC	3 cut(s)	29, 112, 445
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	3 cut(s)	151, 649, 814
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	67, 777, 890
MalI	GATC	6 cut(s)	101, 252, 326, 438, 550, 556
MboI	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	4 cut(s)	450, 542, 770, 909
MluCI	AATT	3 cut(s)	33, 283, 472
MlyI	GAGTC	2 cut(s)	67, 785
MnlI	CCTC	8 cut(s)	6, 120, 148, 183, 296, 373, 631, 844
MseI	TTAA	5 cut(s)	287, 366, 464, 507, 983
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	1 cut(s)	703
MspR9I	CCNGG	3 cut(s)	177, 312, 597
MvaI	CCWGG	3 cut(s)	177, 312, 597
MwoI	GCNNNNNNNGC	2 cut(s)	148, 592
NdeII	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
NlaIII	CATG	3 cut(s)	427, 881, 902
NmeAIII	GCCGAG	2 cut(s)	91, 626
NmuCI	GTSAC	2 cut(s)	67, 777
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	535
PciI	ACATGT	1 cut(s)	423
PciSI	GCTCTTC	2 cut(s)	722, 897
PfeI	GAWTC	2 cut(s)	46, 59
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	2 cut(s)	67, 784
PpsI	GAGTC	2 cut(s)	67, 784
PscI	ACATGT	1 cut(s)	423
Psp124BI	GAGCTC	2 cut(s)	450, 542
Psp6I	CCWGG	3 cut(s)	175, 310, 595
PspGI	CCWGG	3 cut(s)	175, 310, 595
PspXI	VCTCGAGB	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	998, 1029
RsaNI	GTAC	2 cut(s)	997, 1028
SacI	GAGCTC	2 cut(s)	450, 542
SapI	GCTCTTC	2 cut(s)	722, 897
SaqAI	TTAA	5 cut(s)	287, 366, 464, 507, 983
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	6 cut(s)	99, 250, 324, 436, 548, 554
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	2 cut(s)	67, 785
ScrFI	CCNGG	3 cut(s)	177, 312, 597
SduI	GDGCHC	4 cut(s)	450, 542, 770, 909
SfaNI	GCATC	3 cut(s)	151, 649, 814
Sfr274I	CTCGAG	1 cut(s)	535
SlaI	CTCGAG	1 cut(s)	535
SmlI	CTYRAG	2 cut(s)	506, 535
SmoI	CTYRAG	2 cut(s)	506, 535
Sse9I	AATT	3 cut(s)	33, 283, 472
SsiI	CCGC	3 cut(s)	89, 93, 165
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	2 cut(s)	450, 542
StyD4I	CCNGG	3 cut(s)	175, 310, 595
StyI	CCWWGG	2 cut(s)	278, 762
TaaI	ACNGT	2 cut(s)	292, 787
TaqI	TCGA	2 cut(s)	198, 536
TasI	AATT	3 cut(s)	33, 283, 472
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	2 cut(s)	46, 59
Tru1I	TTAA	5 cut(s)	287, 366, 464, 507, 983
Tru9I	TTAA	5 cut(s)	287, 366, 464, 507, 983
TscAI	CASTG	3 cut(s)	640, 775, 786
TseFI	GTSAC	2 cut(s)	67, 777
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	67, 777
TspDTI	ATGAA	8 cut(s)	38, 284, 434, 545, 804, 855, 915, 995
TspRI	CASTG	3 cut(s)	640, 775, 786
Vha464I	CTTAAG	1 cut(s)	506
XagI	CCTNNNNNAGG	2 cut(s)	114, 333
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	928
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.