Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

16666797 .. 16669989

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0195300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCAACCACCGACCACCCTCAACGTGGCGGTGATCGGCGCCGGAGCCGCCGGCCTGGTGGCCGCACGTGAGCTCCGGCGGGAAGGTCACACTGTTGTCGTGTTCGAGCGAGGAAACCAAATCGGTGGCACGTGGGTGTACACTCCAGAAGTGGAGTCGGACCCAATTGGTCTCCACCCAAACAGAAACATAGTCCACTCGAGCATGTACCAGTCTCTCAGGACCAATCTCCCAAGAGAGGTCATGGGGTTCCGGGACTACCCTTTTGTGGTCAAGGAAGGAGATGAAGAGAGAGACCCGAGAAGGTTTCCGGGTCACAGAGAGGTGTTGAAGTACTTGAATGATTACGCTACCGAGTTTGGGATTTATGAGGTTGTGAGGTTTGAGAGTGAGGTGGTGTCTGTGGGTTTGCTGGAGGGTGGAAAGTGGAAGGTGAAGTCCAAGAGCAAGAGAGGTGAGGTTGTGGAAGAGATTTCTGATGCTGTGGTGCTGTGTAATGGACATCATACTGAGCCACGTGTAGCTCAGATTTCAGGCATCGATACATGGAAGGGGAAGCAAATTCACAGTCACAATTATCGTACTCCTGAGCCATTTAGAGATCAGGTTGTAATTTTGATAGGCAGCGCCACTAGTGCTGTTGATATATCTCGGGAGATAGCTGGAGTTGCTAAAGAAGTCCACATTGCATCTAGATCTGTTGCGGATGAAACCATTGAAAAGCACCCTGGCTATGATAACTTGTGGCTTCACTCAATGGTAAAAGAATTCACCCATGATCAGATCATCAGAAGTGTCCATGAAGATGGTAGTGTTGTTTTCCAAGATGGTAGTGTTGTCCGTGCTGACATCATTCTTCACTGCACAGGGTACAAATATCATTTTCCATTTCTCGAAACGAATGGCATTGTGATTGTGGATGACAATCGTGTTGAGCCACTGTACAAGCATGTCTTCCCACCTGTCTTTGCTCCTTCGCTTTCCTTTGTTGGAATACCATGGAAGGTCGCTACTTTCTTCATGTTTGAACTTCAAAGCAAGTGGATAGCTGGTGTTTTGTCTAATCGAATTGCACTTCCATCCCAAGAGGACATGATGGAGGATGTCAGAGCTTTCTACTCTTTACTTGAAGCTTCTGACACACCTAAGCGATACACTCATAACATTGCTGATCATCAGTTTGGATATGACGATTGGGTTGCAACTGAGTGTGGGTGTCCAATATCTGAGGAATGGAGAAAGGAAATGTACTTTGCAGCTATAGAGAACATGCTAACCAAACCAGAGACATACCGGGATGAGTGGGTCGAATACGACCATTTAGTGTCGCAAGCTCACGAGGACTTCAAGAAATATGCCTTAAATGGACATATAATTCTTGATCAAAAGAAAGTGGACATGTTAATGGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

471

Amino Acids

53.71

Weight (kDa)

5.56

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	8 - 233	4.2e-35	Flavin-binding monooxygenase-like
Pyr_redox_2	PF07992	8 - 307	2.8e-15	Pyridine nucleotide-disulphide oxidoreductase
HI0933_like	PF03486	8 - 42	6.8e-06	HI0933-like protein Rossmann domain
DAO	PF01266	9 - 44	1.4e-07	FAD dependent oxidoreductase
FAD_oxidored	PF12831	9 - 79	7.5e-07	FAD dependent oxidoreductase
FAD_binding_2	PF00890	9 - 46	4.7e-07	FAD binding domain
NAD_binding_8	PF13450	11 - 45	1.1e-10	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	17 - 88	1.8e-06	Flavin containing amine oxidoreductase
Pyr_redox_3	PF13738	75 - 315	4.3e-16	Pyridine nucleotide-disulphide oxidoreductase
FMO-like	PF00743	265 - 371	2.9e-16	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	5 cut(s)	29, 48, 63, 79, 704
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	561, 767
AcvI	CACGTG	3 cut(s)	68, 132, 518
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	7 cut(s)	140, 209, 335, 583, 872, 944, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	25, 238, 268, 360
AflIII	ACRYGT	2 cut(s)	517, 1398
AgsI	TTSAA	7 cut(s)	331, 340, 719, 1028, 1034, 1130, 1348
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	54, 727
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	8 cut(s)	73, 524, 662, 1049, 1112, 1133, 1259, 1334
AluI	AGCT	8 cut(s)	73, 524, 662, 1049, 1112, 1133, 1259, 1334
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	4 cut(s)	176, 219, 288, 1280
Ama87I	CYCGRG	3 cut(s)	199, 298, 651
AoxI	GGCC	2 cut(s)	52, 60
ApeKI	GCWGC	2 cut(s)	624, 1256
ApoI	RAATTY	2 cut(s)	561, 767
ArsI	GACNNNNNNTTYG	4 cut(s)	248, 280, 553, 585
AspLEI	GCGC	2 cut(s)	41, 629
AspS9I	GGNCC	2 cut(s)	160, 222
AsuC2I	CCSGG	3 cut(s)	254, 312, 1295
AsuHPI	GGTGA	4 cut(s)	43, 445, 467, 763
AvaI	CYCGRG	3 cut(s)	199, 298, 651
AvaII	GGWCC	2 cut(s)	160, 222
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	1337
BbrPI	CACGTG	3 cut(s)	68, 132, 518
BbsI	GAAGAC	1 cut(s)	946
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	636, 1268
BccI	CCATC	4 cut(s)	800, 821, 1087, 1090
BcgI	CGANNNNNNTGC	2 cut(s)	1181, 1215
BciT130I	CCWGG	2 cut(s)	56, 729
BclI	TGATCA	3 cut(s)	778, 1171, 1381
BcnI	CCSGG	3 cut(s)	254, 312, 1295
BcoDI	GTCTC	4 cut(s)	176, 219, 288, 1280
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	2 cut(s)	633, 693
BfmI	CTRYAG	1 cut(s)	1260
BfoI	RGCGCY	2 cut(s)	42, 630
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	4 cut(s)	48, 63, 625, 1257
BlsI	GCNGC	4 cut(s)	49, 64, 626, 1258
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	5 cut(s)	56, 254, 312, 729, 1295
Bme18I	GGWCC	2 cut(s)	160, 222
BmeT110I	CYCGRG	3 cut(s)	199, 298, 651
BmgT120I	GGNCC	2 cut(s)	160, 222
BmiI	GGNNCC	4 cut(s)	40, 46, 162, 251
BmrFI	CCNGG	5 cut(s)	56, 254, 312, 729, 1295
BmsI	GCATC	3 cut(s)	469, 546, 698
BpiI	GAAGAC	1 cut(s)	946
BpmI	CTGGAG	3 cut(s)	129, 434, 684
Bpu10I	CCTNAGC	2 cut(s)	588, 1146
BpuMI	CCSGG	3 cut(s)	254, 312, 1295
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	3 cut(s)	68, 132, 518
BsaBI	GATNNNNATC	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	176, 288
BsaJI	CCNNGG	2 cut(s)	727, 998
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 238, 268, 360
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	684, 1164
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	56, 729
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	727, 998
BseGI	GGATG	5 cut(s)	712, 925, 1079, 1108, 1303
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	4 cut(s)	25, 238, 268, 360
BseMI	GCAATG	2 cut(s)	684, 1164
BseMII	CTCAG	6 cut(s)	232, 501, 539, 579, 1197, 1218
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	636, 1268
BsgI	GTGCAG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	54, 62
BshNI	GGYRCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	3 cut(s)	199, 298, 651
BsiSI	CCGG	6 cut(s)	42, 51, 76, 253, 311, 1294
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	4 cut(s)	25, 238, 268, 360
BsmAI	GTCTC	4 cut(s)	176, 219, 288, 1280
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	54, 62
Bso31I	GGTCTC	2 cut(s)	176, 288
BsoBI	CYCGRG	3 cut(s)	199, 298, 651
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp1407I	TGTACA	2 cut(s)	138, 942
Bsp143I	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
Bsp19I	CCATGG	1 cut(s)	998
BspACI	CCGC	5 cut(s)	29, 48, 63, 79, 704
BspANI	GGCC	2 cut(s)	54, 62
BspCNI	CTCAG	6 cut(s)	231, 502, 538, 580, 1198, 1219
BspDI	ATCGAT	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	40, 46, 162, 251
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	176, 288
BsrDI	GCAATG	2 cut(s)	684, 1164
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	2 cut(s)	138, 942
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	727, 998
BssMI	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	1337
BssT1I	CCWWGG	1 cut(s)	998
Bst2BI	CACGAG	1 cut(s)	1337
Bst2UI	CCWGG	2 cut(s)	56, 729
Bst4CI	ACNGT	3 cut(s)	94, 569, 942
Bst6I	CTCTTC	2 cut(s)	282, 462
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	2 cut(s)	138, 942
BstBAI	YACGTR	3 cut(s)	68, 132, 518
BstC8I	GCNNGC	2 cut(s)	52, 1332
BstDEI	CTNAG	7 cut(s)	218, 510, 525, 588, 1146, 1206, 1227
BstDSI	CCRYGG	1 cut(s)	998
BstF5I	GGATG	5 cut(s)	712, 925, 1079, 1108, 1303
BstH2I	RGCGCY	2 cut(s)	42, 630
BstHHI	GCGC	2 cut(s)	41, 629
BstKTI	GATC	7 cut(s)	36, 604, 698, 781, 786, 1174, 1384
BstMAI	GTCTC	4 cut(s)	176, 219, 288, 1280
BstMBI	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 635, 668
BstNI	CCWGG	2 cut(s)	56, 729
BstNSI	RCATGY	4 cut(s)	208, 953, 1273, 1402
BstSCI	CCNGG	5 cut(s)	54, 252, 310, 727, 1293
BstSFI	CTRYAG	1 cut(s)	1260
BstV1I	GCAGC	2 cut(s)	636, 1268
BstV2I	GAAGAC	1 cut(s)	946
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	2 cut(s)	125, 806
BstYI	RGATCY	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	54, 62
BsuTUI	ATCGAT	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	998
BtsCI	GGATG	5 cut(s)	712, 925, 1079, 1108, 1303
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	3 cut(s)	90, 859, 938
Cac8I	GCNNGC	2 cut(s)	52, 1332
CfoI	GCGC	2 cut(s)	41, 629
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	160, 222
ClaI	ATCGAT	1 cut(s)	540
Csp6I	GTAC	7 cut(s)	139, 208, 334, 582, 871, 943, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	1022, 1057
CviQI	GTAC	7 cut(s)	139, 208, 334, 582, 871, 943, 1249
DdeI	CTNAG	7 cut(s)	218, 510, 525, 588, 1146, 1206, 1227
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	35, 603, 697, 780, 785, 1173, 1383
DpnII	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	282, 462
EarI	CTCTTC	2 cut(s)	282, 462
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	998
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	2 cut(s)	176, 288
Eco47I	GGWCC	2 cut(s)	160, 222
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	3 cut(s)	68, 132, 518
Eco88I	CYCGRG	3 cut(s)	199, 298, 651
EcoICRI	GAGCTC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	54, 727
EcoT14I	CCWWGG	1 cut(s)	998
EcoT38I	GRGCYC	1 cut(s)	75
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	998
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FaqI	GGGAC	1 cut(s)	269
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	3 cut(s)	778, 1171, 1381
Fnu4HI	GCNGC	4 cut(s)	48, 63, 625, 1257
FokI	GGATG	5 cut(s)	719, 932, 1066, 1115, 1310
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	4 cut(s)	48, 63, 625, 1257
FspBI	CTAG	2 cut(s)	633, 693
GlaI	GCGC	2 cut(s)	40, 628
GluI	GCNGC	4 cut(s)	48, 63, 625, 1257
GsuI	CTGGAG	3 cut(s)	129, 434, 684
HaeII	RGCGCY	2 cut(s)	42, 630
HaeIII	GGCC	2 cut(s)	54, 62
HapII	CCGG	6 cut(s)	42, 51, 76, 253, 311, 1294
HhaI	GCGC	2 cut(s)	41, 629
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	2 cut(s)	39, 627
HinP1I	GCGC	2 cut(s)	39, 627
HindIII	AAGCTT	1 cut(s)	1131
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	6 cut(s)	42, 51, 76, 253, 311, 1294
HphI	GGTGA	4 cut(s)	43, 445, 467, 763
Hpy166II	GTNNAC	5 cut(s)	139, 141, 196, 682, 1396
Hpy188I	TCNGA	8 cut(s)	160, 478, 528, 783, 791, 1109, 1138, 1228
Hpy188III	TCNNGA	9 cut(s)	146, 220, 587, 653, 693, 893, 1337, 1348, 1379
Hpy8I	GTNNAC	5 cut(s)	139, 141, 196, 682, 1396
HpyAV	CCTTC	7 cut(s)	77, 272, 297, 424, 544, 984, 997
HpyCH4III	ACNGT	3 cut(s)	94, 569, 942
HpyCH4IV	ACGT	4 cut(s)	24, 67, 131, 517
HpyCH4V	TGCA	6 cut(s)	4, 689, 864, 1073, 1202, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 635, 668
HpyF3I	CTNAG	7 cut(s)	218, 510, 525, 588, 1146, 1206, 1227
HpySE526I	ACGT	4 cut(s)	24, 67, 131, 517
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	2 cut(s)	39, 627
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	3 cut(s)	778, 1171, 1381
Kzo9I	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
LmnI	GCTCC	3 cut(s)	44, 78, 976
Lsp1109I	GCAGC	2 cut(s)	636, 1268
LweI	GCATC	3 cut(s)	469, 546, 698
MaeI	CTAG	2 cut(s)	633, 693
MaeII	ACGT	4 cut(s)	24, 67, 131, 517
MaeIII	GTNAC	3 cut(s)	86, 314, 569
MalI	GATC	7 cut(s)	35, 603, 697, 780, 785, 1173, 1383
MboI	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
MboII	GAAGA	6 cut(s)	299, 479, 815, 848, 946, 1009
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	7 cut(s)	165, 561, 574, 612, 767, 1068, 1374
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	138, 970
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	1361, 1403
MslI	CAYNNNNRTG	3 cut(s)	134, 804, 1403
MspI	CCGG	6 cut(s)	42, 51, 76, 253, 311, 1294
MspR9I	CCNGG	5 cut(s)	56, 254, 312, 729, 1295
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	56, 729
MwoI	GCNNNNNNNGC	3 cut(s)	47, 635, 668
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	254, 312, 1295
NcoI	CCATGG	1 cut(s)	998
NdeII	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
NgoMIV	GCCGGC	1 cut(s)	50
NlaIV	GGNNCC	4 cut(s)	40, 46, 162, 251
NmuCI	GTSAC	3 cut(s)	86, 314, 569
NspI	RCATGY	4 cut(s)	208, 953, 1273, 1402
OliI	CACNNNNGTG	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	199
PciI	ACATGT	1 cut(s)	1398
PdiI	GCCGGC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	49, 64, 626, 1258
PleI	GAGTC	1 cut(s)	163
PluTI	GGCGCC	1 cut(s)	42
PmaCI	CACGTG	3 cut(s)	68, 132, 518
PmlI	CACGTG	3 cut(s)	68, 132, 518
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	3 cut(s)	68, 132, 518
PscI	ACATGT	1 cut(s)	1398
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	54, 727
PspCI	CACGTG	3 cut(s)	68, 132, 518
PspGI	CCWGG	2 cut(s)	54, 727
PspN4I	GGNNCC	4 cut(s)	40, 46, 162, 251
PspPI	GGNCC	2 cut(s)	160, 222
PspXI	VCTCGAGB	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	7 cut(s)	140, 209, 335, 583, 872, 944, 1250
RsaNI	GTAC	7 cut(s)	139, 208, 334, 582, 871, 943, 1249
RseI	CAYNNNNRTG	3 cut(s)	134, 804, 1403
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	1361, 1403
SatI	GCNGC	4 cut(s)	48, 63, 625, 1257
Sau3AI	GATC	7 cut(s)	33, 601, 695, 778, 783, 1171, 1381
Sau96I	GGNCC	2 cut(s)	160, 222
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	5 cut(s)	56, 254, 312, 729, 1295
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	3 cut(s)	469, 546, 698
SfcI	CTRYAG	1 cut(s)	1260
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	160, 222
SlaI	CTCGAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	134, 804, 1403
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	7 cut(s)	165, 561, 574, 612, 767, 1068, 1374
SsiI	CCGC	5 cut(s)	29, 48, 63, 79, 704
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	633, 693
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	5 cut(s)	54, 252, 310, 727, 1293
StyI	CCWWGG	1 cut(s)	998
TaaI	ACNGT	3 cut(s)	94, 569, 942
TaiI	ACGT	4 cut(s)	27, 70, 134, 520
TaqI	TCGA	6 cut(s)	105, 200, 540, 894, 1066, 1308
TasI	AATT	7 cut(s)	165, 561, 574, 612, 767, 1068, 1374
TatI	WGTACW	4 cut(s)	138, 333, 942, 1248
TauI	GCSGC	2 cut(s)	50, 65
Tru1I	TTAA	2 cut(s)	1361, 1403
Tru9I	TTAA	2 cut(s)	1361, 1403
TscAI	CASTG	3 cut(s)	97, 866, 945
TseFI	GTSAC	3 cut(s)	86, 314, 569
TseI	GCWGC	2 cut(s)	624, 1256
Tsp45I	GTSAC	3 cut(s)	86, 314, 569
TspDTI	ATGAA	4 cut(s)	300, 723, 816, 1009
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	97, 866, 945
VpaK11BI	GGWCC	2 cut(s)	160, 222
XapI	RAATTY	2 cut(s)	561, 767
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	4 cut(s)	208, 953, 1273, 1402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	2 cut(s)	633, 693
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.