Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

39315811 .. 39320841

Gene Structure 5031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGACATGGAAGCACAGAGGTTTTTATGGGAAGGAGCAATTCCTTTGCAGATTCATCTCCACGAATCCGAAGTCACGACTCTTCCTTCTCCCCCGCCCGCCCTGATCTTAGCTCCTCGGCTAGGGTACCTACCGTTGTTGGCCTCGCATCTAAAGCCTTACTTCAGCACCGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGACTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTTTGTGCAGAACCAGAGAGACCCTGGAATTTAACGGTTCATTTTAGAGGATATCCAGGAAACATATTGATCCCGTGTGAAGGTGAAGACAGCATAAAGTGGAACTTTATTAACTCATTGAAAGAGGCAGCATATATAATCAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGCCGTTGGGGAATGAACTCGAGCTCGCCAAGATCCCGATCGAGTATGGGTGAAGTTGATGTTTCTGGGCAGGTGAAGCCAGGCCGAGTTCCAGTTCGGTTATATGTTTGGAATGTCAGTGAAGACTTTGATGACTTAGAAGATGCACCACCGATTGATAGTTGGGACAAAGTTTCTTACATAAACCGGCCTGTCGAGATACAAGAAGGTAGATGCTTCACTTTACATGATGCAGTGAAGAGCCTTCTGCCAGACTATTTTGTGGTCAAATCCTTGGGCACTGCTGAGTCACTGACAGTAGTTGGTGATGACGAGCAAAGAGTTTCATCCGAAGATGCAAGTGATGATAAAAAAGCTGAAGAGGAAGTAGAAACTTCATCTGATGACCATGTAAAGGCTAGTTACGAACATGAAGAGCCCGAAATCAAGCTGGTTCGTATACAAGGTATTGAACCAAAACTGGAGATACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCTGAGCACTTCCTTCATATCTCTGTATATTTGAAAGTACGACAAGTCAATAATACCATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

340

Amino Acids

38.55

Weight (kDa)

4.83

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 102	4.2e-29	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	116 - 153	4.3e-14	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	181 - 328	1.7e-18	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	895
AciI	CCGC	3 cut(s)	95, 99, 171
AclWI	GGATC	2 cut(s)	325, 483
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	148, 834
AfaI	GTAC	2 cut(s)	128, 996
AfiI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 850
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	226, 382, 908, 991
AjnI	CCWGG	4 cut(s)	181, 284, 316, 535
AluBI	AGCT	5 cut(s)	113, 454, 480, 812, 886
AluI	AGCT	5 cut(s)	113, 454, 480, 812, 886
Alw21I	GWGCWC	3 cut(s)	456, 482, 966
Alw26I	GTCTC	2 cut(s)	274, 438
AlwI	GGATC	2 cut(s)	325, 483
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	3 cut(s)	141, 538, 644
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
Asp718I	GGTACC	1 cut(s)	126
AsuHPI	GGTGA	4 cut(s)	356, 518, 541, 773
AvaI	CYCGRG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	3 cut(s)	456, 482, 876
BbsI	GAAGAC	2 cut(s)	354, 585
Bbv12I	GWGCWC	3 cut(s)	456, 482, 966
BbvI	GCAGC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	4 cut(s)	183, 286, 318, 537
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	274, 438
BfaI	CTAG	2 cut(s)	122, 855
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	4 cut(s)	183, 286, 318, 537
BmeT110I	CYCGRG	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	4 cut(s)	183, 286, 318, 537
BmsI	GCATC	5 cut(s)	157, 589, 659, 676, 781
BpiI	GAAGAC	2 cut(s)	354, 585
BpmI	CTGGAG	1 cut(s)	938
Bpu10I	CCTNAGC	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	116, 284, 729
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 850
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	2 cut(s)	548, 921
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	4 cut(s)	183, 286, 318, 537
BseDI	CCNNGG	3 cut(s)	116, 284, 729
BseGI	GGATG	1 cut(s)	782
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 850
BseMII	CTCAG	2 cut(s)	732, 951
BseNI	ACTGG	2 cut(s)	548, 921
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	143, 540, 646
BshNI	GGYRCC	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	3 cut(s)	456, 482, 966
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 850
BsmAI	GTCTC	2 cut(s)	274, 438
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	3 cut(s)	143, 540, 646
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	5 cut(s)	456, 482, 737, 876, 966
Bsp143I	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
BspACI	CCGC	3 cut(s)	95, 99, 171
BspANI	GGCC	3 cut(s)	143, 540, 646
BspCNI	CTCAG	2 cut(s)	733, 952
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	2 cut(s)	325, 483
BspQI	GCTCTTC	2 cut(s)	689, 864
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	548, 921
BssAI	RCCGGY	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	116, 284, 729
BssMI	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
BssNAI	GTATAC	1 cut(s)	896
BssT1I	CCWWGG	1 cut(s)	729
Bst1107I	GTATAC	1 cut(s)	896
Bst2UI	CCWGG	4 cut(s)	183, 286, 318, 537
Bst4CI	ACNGT	3 cut(s)	135, 298, 754
Bst6I	CTCTTC	4 cut(s)	87, 689, 810, 864
BstC8I	GCNNGC	3 cut(s)	99, 218, 482
BstDEI	CTNAG	4 cut(s)	109, 592, 741, 960
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	782
BstKTI	GATC	6 cut(s)	108, 259, 333, 445, 491, 497
BstMAI	GTCTC	2 cut(s)	274, 438
BstMBI	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 532, 961
BstNI	CCWGG	4 cut(s)	183, 286, 318, 537
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	4 cut(s)	181, 284, 316, 535
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	2 cut(s)	354, 585
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	933
BstYI	RGATCY	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	143, 540, 646
BtsCI	GGATG	1 cut(s)	782
BtsI	GCAGTG	2 cut(s)	696, 735
BtsIMutI	CAGTG	4 cut(s)	580, 696, 735, 746
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	99, 218, 482
Cfr10I	RCCGGY	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	127, 995
CviAII	CATG	6 cut(s)	7, 430, 683, 845, 866, 1015
CviQI	GTAC	2 cut(s)	127, 995
DdeI	CTNAG	4 cut(s)	109, 592, 741, 960
DpnI	GATC	6 cut(s)	107, 258, 332, 444, 490, 496
DpnII	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
Eam1104I	CTCTTC	4 cut(s)	87, 689, 810, 864
EarI	CTCTTC	4 cut(s)	87, 689, 810, 864
Ecl136II	GAGCTC	2 cut(s)	454, 480
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	3 cut(s)	456, 482, 876
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	314
Eco53kI	GAGCTC	2 cut(s)	454, 480
Eco57I	CTGAAG	2 cut(s)	148, 834
Eco88I	CYCGRG	1 cut(s)	475
EcoICRI	GAGCTC	2 cut(s)	454, 480
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	4 cut(s)	181, 284, 316, 535
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	3 cut(s)	456, 482, 876
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	10, 433, 686, 848, 869, 1018
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 350, 382
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	6 cut(s)	6, 429, 682, 844, 865, 1014
FauI	CCCGC	2 cut(s)	102, 106
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	769
FriOI	GRGCYC	3 cut(s)	456, 482, 876
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	122, 855
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	938
HaeIII	GGCC	3 cut(s)	143, 540, 646
HapII	CCGG	1 cut(s)	643
Hin1II	CATG	6 cut(s)	10, 433, 686, 848, 869, 1018
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	52, 65, 79, 743
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	4 cut(s)	356, 518, 541, 773
Hpy166II	GTNNAC	2 cut(s)	190, 896
Hpy188I	TCNGA	3 cut(s)	70, 787, 838
Hpy188III	TCNNGA	3 cut(s)	76, 492, 652
Hpy8I	GTNNAC	2 cut(s)	190, 896
HpyAV	CCTTC	6 cut(s)	26, 96, 335, 656, 710, 980
HpyCH4III	ACNGT	3 cut(s)	135, 298, 754
HpyCH4V	TGCA	7 cut(s)	49, 269, 414, 602, 689, 794, 955
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 532, 961
HpyF3I	CTNAG	4 cut(s)	109, 592, 741, 960
Hsp92II	CATG	6 cut(s)	10, 433, 686, 848, 869, 1018
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
LguI	GCTCTTC	2 cut(s)	689, 864
LmnI	GCTCC	3 cut(s)	35, 118, 451
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	5 cut(s)	157, 589, 659, 676, 781
MaeI	CTAG	2 cut(s)	122, 855
MaeIII	GTNAC	3 cut(s)	73, 744, 857
MalI	GATC	6 cut(s)	107, 258, 332, 444, 490, 496
MboI	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
MboII	GAAGA	9 cut(s)	74, 251, 359, 590, 608, 706, 800, 827, 881
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	5 cut(s)	456, 482, 737, 876, 966
MluCI	AATT	2 cut(s)	39, 289
MlyI	GAGTC	2 cut(s)	73, 752
MnlI	CCTC	7 cut(s)	12, 126, 154, 189, 302, 379, 811
MseI	TTAA	3 cut(s)	293, 372, 950
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	4 cut(s)	183, 286, 318, 537
MvaI	CCWGG	4 cut(s)	183, 286, 318, 537
MwoI	GCNNNNNNNGC	3 cut(s)	154, 532, 961
NdeII	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
NlaIII	CATG	6 cut(s)	10, 433, 686, 848, 869, 1018
NlaIV	GGNNCC	1 cut(s)	128
NmeAIII	GCCGAG	2 cut(s)	97, 566
NmuCI	GTSAC	2 cut(s)	73, 744
NspI	RCATGY	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	517
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	2 cut(s)	689, 864
PfeI	GAWTC	2 cut(s)	52, 65
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	391
Ple19I	CGATCG	1 cut(s)	497
PleI	GAGTC	2 cut(s)	73, 751
PpsI	GAGTC	2 cut(s)	73, 751
PscI	ACATGT	1 cut(s)	429
Psp124BI	GAGCTC	2 cut(s)	456, 482
Psp6I	CCWGG	4 cut(s)	181, 284, 316, 535
PspGI	CCWGG	4 cut(s)	181, 284, 316, 535
PspN4I	GGNNCC	1 cut(s)	128
PspXI	VCTCGAGB	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	488
PvuI	CGATCG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	128, 996
RsaNI	GTAC	2 cut(s)	127, 995
SacI	GAGCTC	2 cut(s)	456, 482
SapI	GCTCTTC	2 cut(s)	689, 864
SaqAI	TTAA	3 cut(s)	293, 372, 950
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	6 cut(s)	105, 256, 330, 442, 488, 494
SchI	GAGTC	2 cut(s)	73, 752
ScrFI	CCNGG	4 cut(s)	183, 286, 318, 537
SduI	GDGCHC	5 cut(s)	456, 482, 737, 876, 966
SfaNI	GCATC	5 cut(s)	157, 589, 659, 676, 781
Sfr274I	CTCGAG	1 cut(s)	475
SlaI	CTCGAG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	2 cut(s)	39, 289
SsiI	CCGC	3 cut(s)	95, 99, 171
SspMI	CTAG	2 cut(s)	122, 855
SstI	GAGCTC	2 cut(s)	456, 482
StyD4I	CCNGG	4 cut(s)	181, 284, 316, 535
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	3 cut(s)	135, 298, 754
TaqI	TCGA	4 cut(s)	204, 476, 497, 651
TasI	AATT	2 cut(s)	39, 289
TfiI	GAWTC	2 cut(s)	52, 65
Tru1I	TTAA	3 cut(s)	293, 372, 950
Tru9I	TTAA	3 cut(s)	293, 372, 950
TscAI	CASTG	4 cut(s)	580, 696, 742, 753
TseFI	GTSAC	2 cut(s)	73, 744
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	73, 744
TspDTI	ATGAA	8 cut(s)	44, 290, 440, 485, 771, 822, 882, 962
TspRI	CASTG	4 cut(s)	580, 696, 742, 753
XagI	CCTNNNNNAGG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	895
XspI	CTAG	2 cut(s)	122, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.