Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

47167799 .. 47175167

Gene Structure 7369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G579800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGATATGGAAGCACAGAGGTACGTATGGGACGGAGCAATTCCTTTGCAGATTCATCTCCATGAATCCGACGTCGCCACTCTCCCTGCTCCCCCACCAGCCCTGATCTTAGCACCTCGAATTGGGTACCTACCATTGTTAGCATCGCATCTAAAACCTCACTTCAGTAGTGCACTTCCTCCTCGGCTAGATACTATTTGGTTTGAGTACAAAGGTTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTATTTGATCTTCTATGTGCAGAACCAGAAAGGCCTTGGAATCTGACGGTGCATTTTACAGGATATCCGGGGAACATATTGATTCCTTGTGAAGGTGAAGATAGCGTAAAGTGGAGCTTTATTAATTCATTGAAAGAGGCTGCATATATAATTAATGGGAATTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAACCCTACCGACGGGTGTCTACTAAACTTAAGCTTGGGACAGTTGGGGATGAATATGCAGCAAAGTTGAATTTAAGTGGTGAAACTGATTTTTCTGGACAAGTGAAGGCAGGCCGAGTTCCAGTTCGCTTATACGTTTGGAGTGTCAGTGAGGACTTTGAAGATTTAGAAGATGCACCTCAAATTGATAGTTGGGATAAAGTCTCTTACATAAACCGGCCTGTTGAGATACAAGGAGGAGAAGGAGGTAGATGCTTCACTTTACATGATGCAGTGAAAAGCCTTCTGCCAGAGTATTTTCTTGACAAATCCTTGACCAATGAAGAATCATTGACTGTAGGTGATGAGCATGAACAAAGAGTTTCCTCAGAAGATGCAAGCAGCGATAGAAAGGCCGAAGAGGAAGTAGAAAACTCAAGCGAACATATCACGTCTTGCTATCAACATGATGATGCTGCAATCAAGCTAGTTCGTATCCAAGGTATTCATCCGAAATTGGAGATACCATTTTCTTGGGTGGCAAACAACTTAATGAACCCTGAGCACTTTCTTCATATCTGTGTGTATTTGAAAGTTCCACAAGCCAATACCATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

361

Amino Acids

40.63

Weight (kDa)

4.98

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	23, 128, 209
AfiI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	5 cut(s)	226, 382, 553, 644, 1054
AjiI	CACGTC	1 cut(s)	915
AluBI	AGCT	4 cut(s)	366, 454, 517, 949
AluI	AGCT	4 cut(s)	366, 454, 517, 949
Alw21I	GWGCWC	3 cut(s)	175, 456, 1029
Alw26I	GTCTC	2 cut(s)	438, 691
Alw44I	GTGCAC	1 cut(s)	171
AoxI	GGCC	4 cut(s)	281, 595, 701, 876
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	4 cut(s)	389, 542, 864, 938
ApoI	RAATTY	1 cut(s)	553
AseI	ATTAAT	2 cut(s)	372, 402
Asp718I	GGTACC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	356, 575, 836
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	3 cut(s)	175, 456, 1029
BbvI	GCAGC	4 cut(s)	376, 554, 876, 925
BciVI	GTATCC	1 cut(s)	968
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	438, 691
BfaI	CTAG	2 cut(s)	188, 950
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	968
BisI	GCNGC	4 cut(s)	390, 543, 865, 939
BlsI	GCNGC	4 cut(s)	391, 544, 866, 940
Bme1390I	CCNGG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	915
BmiI	GGNNCC	2 cut(s)	128, 486
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	7 cut(s)	152, 157, 646, 725, 742, 847, 925
BoxI	GACNNNNGTC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	883
BpuMI	CCSGG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	182, 284, 317, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
Bse118I	RCCGGY	1 cut(s)	699
Bse1I	ACTGG	1 cut(s)	605
BseDI	CCNNGG	4 cut(s)	182, 284, 317, 961
BseGI	GGATG	2 cut(s)	538, 970
BseLI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
BseMII	CTCAG	2 cut(s)	864, 1014
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	2 cut(s)	171, 735
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	376, 554, 876, 925
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	283, 597, 703, 878
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	3 cut(s)	175, 456, 1029
BsiSI	CCGG	2 cut(s)	317, 700
BslFI	GGGAC	2 cut(s)	44, 535
BslI	CCNNNNNNNGG	4 cut(s)	122, 228, 341, 495
BsmAI	GTCTC	2 cut(s)	438, 691
BsmFI	GGGAC	2 cut(s)	44, 535
BsnI	GGCC	4 cut(s)	283, 597, 703, 878
Bsp1286I	GDGCHC	3 cut(s)	175, 456, 1029
Bsp143I	GATC	3 cut(s)	105, 256, 442
BspANI	GGCC	4 cut(s)	283, 597, 703, 878
BspCNI	CTCAG	2 cut(s)	863, 1015
BspLI	GGNNCC	2 cut(s)	128, 486
BspT107I	GGYRCC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	4 cut(s)	182, 284, 317, 961
BssMI	GATC	3 cut(s)	105, 256, 442
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	284, 961
Bst4CI	ACNGT	3 cut(s)	298, 526, 820
Bst6I	CTCTTC	1 cut(s)	876
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	595, 862
BstDEI	CTNAG	3 cut(s)	109, 850, 1023
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	538, 970
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	108, 259, 445
BstMAI	GTCTC	2 cut(s)	438, 691
BstMBI	GATC	3 cut(s)	105, 256, 442
BstNSI	RCATGY	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	25
BstV1I	GCAGC	4 cut(s)	376, 554, 876, 925
BstXI	CCANNNNNNTGG	1 cut(s)	996
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	4 cut(s)	283, 597, 703, 878
BtgZI	GCGATG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	538, 970
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	637, 762
Cac8I	GCNNGC	2 cut(s)	595, 862
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	22, 127, 208
CviAII	CATG	6 cut(s)	62, 430, 749, 833, 929, 1075
CviQI	GTAC	3 cut(s)	22, 127, 208
DdeI	CTNAG	3 cut(s)	109, 850, 1023
DpnI	GATC	3 cut(s)	107, 258, 444
DpnII	GATC	3 cut(s)	105, 256, 442
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	454
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	284, 961
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	284, 961
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	284, 961
FaeI	CATG	6 cut(s)	65, 433, 752, 836, 932, 1078
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	2 cut(s)	44, 535
FatI	CATG	6 cut(s)	61, 429, 748, 832, 928, 1074
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	4 cut(s)	390, 543, 865, 939
FokI	GGATG	2 cut(s)	545, 957
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	390, 543, 865, 939
FspBI	CTAG	2 cut(s)	188, 950
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	4 cut(s)	390, 543, 865, 939
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	4 cut(s)	283, 597, 703, 878
HapII	CCGG	2 cut(s)	317, 700
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	65, 433, 752, 836, 932, 1078
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	52, 65, 289, 331, 809
HpaII	CCGG	2 cut(s)	317, 700
HphI	GGTGA	3 cut(s)	356, 575, 836
Hpy166II	GTNNAC	2 cut(s)	173, 504
Hpy188I	TCNGA	4 cut(s)	70, 294, 853, 975
Hpy188III	TCNNGA	2 cut(s)	579, 785
Hpy8I	GTNNAC	2 cut(s)	173, 504
Hpy99I	CGWCG	3 cut(s)	74, 77, 498
HpyAV	CCTTC	4 cut(s)	335, 583, 719, 776
HpyCH4III	ACNGT	3 cut(s)	298, 526, 820
HpyCH4IV	ACGT	4 cut(s)	24, 72, 618, 914
HpyF3I	CTNAG	3 cut(s)	109, 850, 1023
HpySE526I	ACGT	4 cut(s)	24, 72, 618, 914
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	65, 433, 752, 836, 932, 1078
HspAI	GCGC	1 cut(s)	460
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	105, 256, 442
LmnI	GCTCC	4 cut(s)	35, 94, 363, 451
Lsp1109I	GCAGC	4 cut(s)	376, 554, 876, 925
LweI	GCATC	7 cut(s)	152, 157, 646, 725, 742, 847, 925
MaeI	CTAG	2 cut(s)	188, 950
MaeII	ACGT	4 cut(s)	24, 72, 618, 914
MalI	GATC	3 cut(s)	107, 258, 444
MboI	GATC	3 cut(s)	105, 256, 442
MboII	GAAGA	8 cut(s)	251, 359, 656, 665, 818, 866, 893, 1025
MhlI	GDGCHC	3 cut(s)	175, 456, 1029
MluCI	AATT	9 cut(s)	39, 120, 373, 399, 409, 478, 553, 666, 977
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	6 cut(s)	372, 402, 470, 513, 557, 1013
MslI	CAYNNNNRTG	3 cut(s)	60, 933, 1041
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	2 cut(s)	317, 700
MspR9I	CCNGG	1 cut(s)	318
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	3 cut(s)	105, 256, 442
NlaIII	CATG	6 cut(s)	65, 433, 752, 836, 932, 1078
NlaIV	GGNNCC	2 cut(s)	128, 486
NmeAIII	GCCGAG	2 cut(s)	163, 623
NspI	RCATGY	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	283
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	5 cut(s)	52, 65, 289, 331, 809
PkrI	GCNGC	4 cut(s)	391, 544, 866, 940
Ppu21I	YACGTR	1 cut(s)	25
PscI	ACATGT	1 cut(s)	429
PshAI	GACNNNNGTC	1 cut(s)	499
PshBI	ATTAAT	2 cut(s)	372, 402
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	128, 486
RsaI	GTAC	3 cut(s)	23, 128, 209
RsaNI	GTAC	3 cut(s)	22, 127, 208
RseI	CAYNNNNRTG	3 cut(s)	60, 933, 1041
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	6 cut(s)	372, 402, 470, 513, 557, 1013
SatI	GCNGC	4 cut(s)	390, 543, 865, 939
Sau3AI	GATC	3 cut(s)	105, 256, 442
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	3 cut(s)	175, 456, 1029
SfaNI	GCATC	7 cut(s)	152, 157, 646, 725, 742, 847, 925
SfcI	CTRYAG	1 cut(s)	819
SmiMI	CAYNNNNRTG	3 cut(s)	60, 933, 1041
SmlI	CTYRAG	2 cut(s)	512, 898
SmoI	CTYRAG	2 cut(s)	512, 898
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	9 cut(s)	39, 120, 373, 399, 409, 478, 553, 666, 977
SseBI	AGGCCT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	188, 950
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	284, 961
TaaI	ACNGT	3 cut(s)	298, 526, 820
TaiI	ACGT	4 cut(s)	27, 75, 621, 917
TaqI	TCGA	1 cut(s)	118
TasI	AATT	9 cut(s)	39, 120, 373, 399, 409, 478, 553, 666, 977
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	5 cut(s)	52, 65, 289, 331, 809
Tru1I	TTAA	6 cut(s)	372, 402, 470, 513, 557, 1013
Tru9I	TTAA	6 cut(s)	372, 402, 470, 513, 557, 1013
TscAI	CASTG	2 cut(s)	637, 762
TseI	GCWGC	4 cut(s)	389, 542, 864, 938
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	637, 762
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	171
VspI	ATTAAT	2 cut(s)	372, 402
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	2 cut(s)	188, 950
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.