Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

17833424 .. 17834374

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACATGGAAGCCCAGAGCTTTTTATGGAAAGGAGCAATTCCTTTACAGATTCATCTCCATGAATCCGAAGTCACCACTCTTCCTTCCCCCCCACCCGCCCTGATCTTAGCTCCTCGGCTAGGATACCTACCGTTGTTGGCCTCGCATTTAAAGCCTTACTTCAGCAGTGCACTTCCTCCTGGTGTTGACACTATTTGGTTCGAGTACAAAGGCTTGCCCTTGAAATGGTATATACCAACAGGAGTTCTTTTTGATCTTCTATGTGCAGAAGCAGAGAGACCTTGGAATTTAACGGTGCATTTTAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTGAAGACAGCATAAAGTGGAGCTTTATCAACTCATTGAAAGAGGCAGCATATATAATAAATGGAAACTGCAAGAATGTGATGAACATGTCTCAACCTGATCAGGTGGACCTCTGGCGCTCTGTTTTACATGGTAATTTCGAAGCCTACCAACGGGTATCTTCTAAACTTAAGCTTGGAGCAGTTGGGGAAATTGATGTTTCTGGGCAGGTGAAGCAAGGCCGAGTTCCAGTTCGGTTATACGTTTGGAATGTCAGTGAGGAATTTGATGACTTAGAAGATGCACCACCTATTGATAGTTGGGACAAAGTTTCTTACATAAACCAGCCTGTCGAGATACAAGGAGAAGGTAGATGCTTCACTTTACATGATGCAGTGAAAAGCCTTCTGCCGGACTATTTTGTGGACAAATCGTTGGGCACTACTGAATCATTGGCAGTAGGTCGCGATGATGACGAGCCTAAAATCAAGCTGGTTCGTATTCAAGGTATTGAACCGAAACTGGAGATACCATTTTCTTGGGTAGCAAACAACTTAATGCACCCTGAGCACTTCCTTCATATCTGTGTATATCTGAAAGTAGCACAAGTCAATAATACTATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

317

Amino Acids

35.68

Weight (kDa)

5.21

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG5_UblA	PF20638	9 - 102	1.9e-29	Autophagy protein ATG5, UblA domain
ATG5_HBR	PF20637	116 - 172	1.1e-23	Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB	PF04106	189 - 304	4.3e-21	Autophagy protein ATG5, UblB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccII	CGCG	1 cut(s)	789
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	289, 605
AcuI	CTGAAG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 733
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	226, 382, 827, 836
AjnI	CCWGG	2 cut(s)	181, 316
AluBI	AGCT	5 cut(s)	21, 113, 366, 517, 814
AluI	AGCT	5 cut(s)	21, 113, 366, 517, 814
Alw21I	GWGCWC	2 cut(s)	175, 894
Alw26I	GTCTC	2 cut(s)	274, 438
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	141, 562
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	289, 605
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	67, 356, 565
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	2 cut(s)	175, 764
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	175, 894
BbvI	GCAGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	183, 318
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	274, 438
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	463
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	183, 318
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmrFI	CCNGG	2 cut(s)	183, 318
BmsI	GCATC	3 cut(s)	613, 686, 703
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	866
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	116, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 733
Bse1I	ACTGG	2 cut(s)	572, 849
BseBI	CCWGG	2 cut(s)	183, 318
BseDI	CCNNGG	2 cut(s)	116, 284
BseLI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 733
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	2 cut(s)	572, 849
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	175, 764
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	2 cut(s)	143, 564
BsiHKAI	GWGCWC	2 cut(s)	175, 894
BsiSI	CCGG	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	5 cut(s)	122, 228, 341, 495, 733
BsmAI	GTCTC	2 cut(s)	274, 438
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	143, 564
Bso31I	GGTCTC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	3 cut(s)	175, 764, 894
Bsp143I	GATC	4 cut(s)	105, 256, 330, 442
Bsp68I	TCGCGA	1 cut(s)	789
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	143, 564
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	789
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	572, 849
BssECI	CCNNGG	2 cut(s)	116, 284
BssMI	GATC	4 cut(s)	105, 256, 330, 442
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	183, 318
Bst4CI	ACNGT	2 cut(s)	135, 298
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	109, 616, 888
BstENI	CCTNNNNNAGG	2 cut(s)	120, 339
BstFNI	CGCG	1 cut(s)	789
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	108, 259, 333, 445
BstMAI	GTCTC	2 cut(s)	274, 438
BstMBI	GATC	4 cut(s)	105, 256, 330, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 556, 889
BstNI	CCWGG	2 cut(s)	183, 318
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	181, 316
BstSLI	GKGCMC	2 cut(s)	175, 764
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	143, 564
BtgZI	GCGATG	1 cut(s)	804
BtsI	GCAGTG	2 cut(s)	175, 723
BtsIMutI	CAGTG	3 cut(s)	175, 604, 723
BtuMI	TCGCGA	1 cut(s)	789
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	5 cut(s)	7, 62, 430, 473, 710
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	109, 616, 888
DpnI	GATC	4 cut(s)	107, 258, 332, 444
DpnII	GATC	4 cut(s)	105, 256, 330, 442
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 339
EcoRII	CCWGG	2 cut(s)	181, 316
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	5 cut(s)	10, 65, 433, 476, 713
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 350, 382
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	5 cut(s)	6, 61, 429, 472, 709
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	866
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	143, 564
HapII	CCGG	1 cut(s)	734
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	10, 65, 433, 476, 713
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	3 cut(s)	52, 65, 770
HpaII	CCGG	1 cut(s)	734
HphI	GGTGA	3 cut(s)	67, 356, 565
Hpy166II	GTNNAC	4 cut(s)	173, 190, 451, 748
Hpy188I	TCNGA	2 cut(s)	70, 918
Hpy188III	TCNNGA	2 cut(s)	676, 788
Hpy8I	GTNNAC	4 cut(s)	173, 190, 451, 748
HpyAV	CCTTC	5 cut(s)	96, 335, 683, 737, 908
HpyCH4III	ACNGT	2 cut(s)	135, 298
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	7 cut(s)	173, 269, 301, 414, 626, 716, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 556, 889
HpyF3I	CTNAG	3 cut(s)	109, 616, 888
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	10, 65, 433, 476, 713
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	105, 256, 330, 442
LmnI	GCTCC	4 cut(s)	35, 118, 363, 521
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	613, 686, 703
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	4 cut(s)	107, 258, 332, 444
MboI	GATC	4 cut(s)	105, 256, 330, 442
MboII	GAAGA	5 cut(s)	74, 251, 359, 495, 632
MhlI	GDGCHC	3 cut(s)	175, 764, 894
MluCI	AATT	5 cut(s)	39, 289, 478, 534, 605
MnlI	CCTC	7 cut(s)	126, 154, 189, 302, 379, 464, 595
MseI	TTAA	4 cut(s)	152, 293, 513, 878
MslI	CAYNNNNRTG	2 cut(s)	60, 906
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	2 cut(s)	183, 318
MvaI	CCWGG	2 cut(s)	183, 318
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	154, 556, 889
NdeII	GATC	4 cut(s)	105, 256, 330, 442
NlaIII	CATG	5 cut(s)	10, 65, 433, 476, 713
NmeAIII	GCCGAG	2 cut(s)	97, 590
NmuCI	GTSAC	1 cut(s)	73
NruI	TCGCGA	1 cut(s)	789
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	541
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	52, 65, 770
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	181, 316
PspGI	CCWGG	2 cut(s)	181, 316
PspPI	GGNCC	1 cut(s)	451
RruI	TCGCGA	1 cut(s)	789
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	60, 906
SaqAI	TTAA	4 cut(s)	152, 293, 513, 878
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	4 cut(s)	105, 256, 330, 442
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	183, 318
SduI	GDGCHC	3 cut(s)	175, 764, 894
SfaNI	GCATC	3 cut(s)	613, 686, 703
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	60, 906
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	39, 289, 478, 534, 605
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	181, 316
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	135, 298
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	204, 483, 675
TasI	AATT	5 cut(s)	39, 289, 478, 534, 605
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	3 cut(s)	52, 65, 770
Tru1I	TTAA	4 cut(s)	152, 293, 513, 878
Tru9I	TTAA	4 cut(s)	152, 293, 513, 878
TscAI	CASTG	3 cut(s)	175, 604, 723
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	44, 78, 440, 890
TspRI	CASTG	3 cut(s)	175, 604, 723
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	2 cut(s)	120, 339
XapI	RAATTY	2 cut(s)	289, 605
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.