Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Forward (+)

64631848 .. 64636355

Gene Structure 4508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0469500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATATTTGAGCAGATTGAGATGCAACTGCAAAAACTGAATGAAAAGGCTGGCTTAGAGACAAAGAAGGCTGATGAACTGGTGTTATGGTTGGGTGAAGAACGAAAGAAATGGGAGAAAGAAAAGAATATACTTCACAGGAAAGTAACTGAGTTGGAGAAACAGCTAGAGGGATTGAAGGAATCAGCAAGCAACACTATTGGTGTGAAGATAATGGGAGATCTTGAGAAACAGCCATTTGTTGCTGCAACCAAGAGAATCAACAATTCTAGAAAATATAGAAAGAGAGCTGCTGATAATATGGCTGCAGAGCTATGCTCTCTTTGGGAGCAATATCTTAGAGATCCGAATTGGCATCCATTCAAAATTATCACTGATAAAGATGGAAGGACACTGGAAGTCATTGATGAAGATGATGAAAAATTGGAGGACTTGAAGACAGAATTTGGTGATGAAGTTTTTGAAGCTGTGAAAACTGCCCTGGCTGAATTGAACGAGTATAATCCAAGTGGCAGATATCCAGTACTAGAGCTTTGGAATTTCATGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCCCATCTACTGAACCATATGAAACCTAATAAGCGGAGAAGTGTTCGTCCAACCTCTGCCTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

217

Amino Acids

25.37

Weight (kDa)

6.49

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	70 - 206	2.4e-50	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	443, 538
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	178, 364, 436, 464, 493
AjnI	CCWGG	2 cut(s)	480, 638
AluBI	AGCT	5 cut(s)	166, 290, 313, 467, 532
AluI	AGCT	5 cut(s)	166, 290, 313, 467, 532
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	245, 290, 305
ApoI	RAATTY	2 cut(s)	443, 538
AsuHPI	GGTGA	2 cut(s)	107, 461
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	232, 277, 292
BccI	CCATC	2 cut(s)	377, 591
BciT130I	CCWGG	2 cut(s)	482, 640
BciVI	GTATCC	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	167, 270, 527
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	3 cut(s)	246, 291, 306
BlsI	GCNGC	3 cut(s)	247, 292, 307
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	482, 640
BmrFI	CCNGG	2 cut(s)	482, 640
BmsI	GCATC	2 cut(s)	12, 364
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	3 cut(s)	84, 399, 521
BseBI	CCWGG	2 cut(s)	482, 640
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	3 cut(s)	84, 399, 521
BseXI	GCAGC	3 cut(s)	232, 277, 292
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	220, 343
BspACI	CCGC	1 cut(s)	613
BspCNI	CTCAG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	84, 399, 521
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	220, 343
Bst2UI	CCWGG	2 cut(s)	482, 640
BstC8I	GCNNGC	2 cut(s)	52, 190
BstDEI	CTNAG	3 cut(s)	55, 150, 338
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	223, 346
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	220, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	2 cut(s)	482, 640
BstSCI	CCNGG	2 cut(s)	480, 638
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	232, 277, 292
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	220, 343
BstYI	RGATCY	2 cut(s)	220, 343
BsuI	GTATCC	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	372, 392
Cac8I	GCNNGC	2 cut(s)	52, 190
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	3 cut(s)	55, 150, 338
DpnI	GATC	2 cut(s)	222, 345
DpnII	GATC	2 cut(s)	220, 343
Eco32I	GATATC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	480, 638
EcoRV	GATATC	1 cut(s)	518
FaeI	CATG	1 cut(s)	547
FaiI	YATR	9 cut(s)	88, 131, 279, 302, 316, 501, 545, 597, 599
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	543
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	3 cut(s)	246, 291, 306
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	246, 291, 306
FspBI	CTAG	3 cut(s)	167, 270, 527
GluI	GCNGC	3 cut(s)	246, 291, 306
Hin1II	CATG	1 cut(s)	547
HinfI	GANTC	2 cut(s)	182, 258
HphI	GGTGA	2 cut(s)	107, 461
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	224, 270
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	4 cut(s)	61, 172, 381, 550
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	4 cut(s)	25, 31, 248, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	3 cut(s)	55, 150, 338
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	220, 343
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	9 cut(s)	36, 65, 124, 380, 467, 494, 534, 538, 625
Lsp1109I	GCAGC	3 cut(s)	232, 277, 292
LweI	GCATC	2 cut(s)	12, 364
MaeI	CTAG	3 cut(s)	167, 270, 527
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	222, 345
MboI	GATC	2 cut(s)	220, 343
MboII	GAAGA	4 cut(s)	110, 220, 422, 448
MflI	RGATCY	2 cut(s)	220, 343
MluCI	AATT	7 cut(s)	265, 349, 366, 422, 443, 488, 538
MmeI	TCCRAC	2 cut(s)	135, 653
MnlI	CCTC	4 cut(s)	163, 421, 565, 643
MspR9I	CCNGG	2 cut(s)	482, 640
MvaI	CCWGG	2 cut(s)	482, 640
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	220, 343
NlaIII	CATG	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	182, 258
PkrI	GCNGC	3 cut(s)	247, 292, 307
Psp6I	CCWGG	2 cut(s)	480, 638
PspGI	CCWGG	2 cut(s)	480, 638
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	220, 343
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SatI	GCNGC	3 cut(s)	246, 291, 306
Sau3AI	GATC	2 cut(s)	220, 343
ScaI	AGTACT	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	482, 640
SetI	ASST	8 cut(s)	168, 292, 315, 469, 534, 566, 607, 635
SfaNI	GCATC	2 cut(s)	12, 364
SfcI	CTRYAG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	7 cut(s)	265, 349, 366, 422, 443, 488, 538
SsiI	CCGC	1 cut(s)	613
SspMI	CTAG	3 cut(s)	167, 270, 527
StyD4I	CCNGG	2 cut(s)	480, 638
TaiI	ACGT	1 cut(s)	566
TasI	AATT	7 cut(s)	265, 349, 366, 422, 443, 488, 538
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	182, 258
TscAI	CASTG	2 cut(s)	379, 399
TseI	GCWGC	3 cut(s)	245, 290, 305
TspDTI	ATGAA	7 cut(s)	57, 90, 423, 432, 468, 532, 614
TspRI	CASTG	2 cut(s)	379, 399
XapI	RAATTY	2 cut(s)	443, 538
XbaI	TCTAGA	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XspI	CTAG	3 cut(s)	167, 270, 527
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.