Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006221.1

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

16537 .. 16866

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006221.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggaagcccagagctttttatggaaaggagcaattcctttgcagattcatctccatgattccgaagtctccactcttccttcacccccacccgccctgatcttagctcctcggctaggatacctaccgttgttggtctcgcatttaaagccttacttcagcagtgcacttcctcctggtgttgacactatttggttcgagtacaaaggcttgcccttgaaatggtatataccaacaggagttctttttgatcttctatgtgcagaagcagagagaccttggaatttaacggtgcattttagaggatatccgatccaggaaacatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

109

Amino Acids

12.39

Weight (kDa)

6.02

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	116, 222
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	175, 315
AluBI	AGCT	2 cut(s)	15, 107
AluI	AGCT	2 cut(s)	15, 107
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	3 cut(s)	73, 142, 268
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	177, 317
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	73, 142, 268
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	177, 317
BmrFI	CCNGG	2 cut(s)	177, 317
BsaI	GGTCTC	2 cut(s)	142, 268
BsaJI	CCNNGG	2 cut(s)	110, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 222
BseBI	CCWGG	2 cut(s)	177, 317
BseDI	CCNNGG	2 cut(s)	110, 278
BseLI	CCNNNNNNNGG	2 cut(s)	116, 222
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	116, 222
BsmAI	GTCTC	3 cut(s)	73, 142, 268
Bso31I	GGTCTC	2 cut(s)	142, 268
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	99, 250, 312
BspACI	CCGC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	307
BspTNI	GGTCTC	2 cut(s)	142, 268
BssECI	CCNNGG	2 cut(s)	110, 278
BssMI	GATC	3 cut(s)	99, 250, 312
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	177, 317
Bst4CI	ACNGT	2 cut(s)	129, 292
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	102, 253, 315
BstMAI	GTCTC	3 cut(s)	73, 142, 268
BstMBI	GATC	3 cut(s)	99, 250, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	177, 317
BstSCI	CCNGG	2 cut(s)	175, 315
BstSLI	GKGCMC	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	6 cut(s)	8, 15, 107, 115, 151, 210
CviKI_1	RGCY	6 cut(s)	8, 15, 107, 115, 151, 210
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	3 cut(s)	101, 252, 314
DpnII	GATC	3 cut(s)	99, 250, 312
DraI	TTTAAA	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	278
Eco31I	GGTCTC	2 cut(s)	142, 268
Eco32I	GATATC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	175, 315
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	59
FaiI	YATR	6 cut(s)	22, 57, 228, 230, 259, 325
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	116
Hin1II	CATG	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	46, 59
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	167, 184
Hpy188I	TCNGA	2 cut(s)	64, 312
Hpy8I	GTNNAC	2 cut(s)	167, 184
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	129, 292
HpyCH4V	TGCA	4 cut(s)	43, 167, 263, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	99, 250, 312
LmnI	GCTCC	2 cut(s)	29, 112
LpnPI	CCDG	6 cut(s)	23, 110, 162, 189, 222, 302
MaeI	CTAG	1 cut(s)	116
MalI	GATC	3 cut(s)	101, 252, 314
MboI	GATC	3 cut(s)	99, 250, 312
MboII	GAAGA	2 cut(s)	68, 245
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	33, 283
MnlI	CCTC	3 cut(s)	120, 183, 296
MseI	TTAA	2 cut(s)	146, 287
MslI	CAYNNNNRTG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	177, 317
MvaI	CCWGG	2 cut(s)	177, 317
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	3 cut(s)	99, 250, 312
NlaIII	CATG	1 cut(s)	59
NmeAIII	GCCGAG	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	46, 59
PfoI	TCCNGGA	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	175, 315
PspGI	CCWGG	2 cut(s)	175, 315
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	146, 287
Sau3AI	GATC	3 cut(s)	99, 250, 312
ScrFI	CCNGG	2 cut(s)	177, 317
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	4 cut(s)	17, 109, 126, 280
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	33, 283
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	175, 315
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	129, 292
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	33, 283
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	46, 59
Tru1I	TTAA	2 cut(s)	146, 287
Tru9I	TTAA	2 cut(s)	146, 287
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.