Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006221.1

Orthogroup ID

OG0002349

Physical Location & Seq

Genomic Coordinates Reverse (-)

16001 .. 16438

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006221.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtctcaacctgatcaggtggagctctggcgctctgttttacatggtaatttcgaagcctaccaacgggtatcttctaaacttaagcttggagcagttggggaaattgatgattctgggcaggtgaagcaagtccgagttccagttcggttatacgtttggaatgtcagtgaggactttgatgacttagaagatgcaccaccgattgatagttgggacaaagtttcttacataaaccggcctgtcgagatacaaggagaaggtagttgcttcactttatatgatgcagtgagccttctgccagactattttgtggacaaatcgttgggcactgctgaatcattgacagtaggtcgcgatgattacacgcaaagagtttcatccaaagatgcaagcgatgataaaaaaagccaaagaggaagtagaaactttatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016020 GO:0016043 GO:0016236 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04211 ko04213 ko04216 ko04621 ko04622 ko05131 map04136 map04137 map04138 map04140 map04211 map04213 map04216 map04621 map04622 map05131

Pfam Domains

Protein Families

APG5

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

4.61

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17290
fragaria_vesca	FvH4_5g28670 FvH4_5g28670
malus_domestica	MD08G1242300.v1.1 MD15G1436000.v1.1
prunus_persica	Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1 Prupe.1G579800_v2.0.a1
pyrus_communis	pycom08g21020 pycom15g38480
rosa_chinensis	RchiOBHm_Chr2g0106631 RchiOBHm_Chr5g0080521 RchiOBHm_Chr7g0220631
rosa_laevigata	RLG00000002214 RLG00000017523 RLG00000036864
rosa_multiflora	Rmu_co8045066.1_g000001 Rmu_sc0006221.1_g000004 Rmu_sc0006221.1_g000005 Rmu_ssc0000189.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002880 Rroxscaffold_2G00136950 Rroxscaffold_3G00239270
rosa_rugosa	Rorug02G0136800 Rorug05G0469500 Rorug07G0195300
rosa_samantha	Rh2AG188100 Rh2BG199100 Rh2CG193200 Rh2DG194300 Rh5BG545000 Rh5BG545100 Rh5CG568400 Rh5DG555300 Rh7AG336500 Rh7BG327400 Rh7CG354300 Rh7DG332800
rosa_wichuraiana	Rw0G023170 Rw2G014770 Rw7G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccII	CGCG	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	83
AhdI	GACNNNNNGTC	1 cut(s)	351
AluBI	AGCT	2 cut(s)	25, 88
AluI	AGCT	2 cut(s)	25, 88
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	34
BfrI	CTTAAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmsI	GCATC	3 cut(s)	184, 274, 379
Bpu14I	TTCGAA	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	27, 332
Bsp143I	GATC	1 cut(s)	13
Bsp68I	TCGCGA	1 cut(s)	357
BspANI	GGCC	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	237
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	349
BstAFI	CTTAAG	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	241
BtgZI	GCGATG	2 cut(s)	372, 411
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	2 cut(s)	294, 330
BtsIMutI	CAGTG	3 cut(s)	175, 294, 330
BtuMI	TCGCGA	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	394
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	237
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	25, 59, 88, 241, 294, 411
CviKI_1	RGCY	6 cut(s)	25, 59, 88, 241, 294, 411
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	47
FaiI	YATR	6 cut(s)	45, 154, 233, 280, 282, 434
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	13
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	113, 338
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	247, 356
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	254, 305
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	197, 287, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	22, 92
LpnPI	CCDG	9 cut(s)	2, 13, 24, 102, 107, 156, 251, 255, 315
LweI	GCATC	3 cut(s)	184, 274, 379
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	66, 203
MhlI	GDGCHC	2 cut(s)	27, 332
MluCI	AATT	2 cut(s)	49, 105
MnlI	CCTC	2 cut(s)	166, 410
MseI	TTAA	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	113, 338
Psp124BI	GAGCTC	1 cut(s)	27
RruI	TCGCGA	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	27, 332
SetI	ASST	8 cut(s)	13, 21, 27, 90, 126, 159, 265, 355
SfaNI	GCATC	3 cut(s)	184, 274, 379
SfuI	TTCGAA	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	49, 105
SstI	GAGCTC	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	54, 246
TasI	AATT	2 cut(s)	49, 105
TfiI	GAWTC	2 cut(s)	113, 338
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	3 cut(s)	175, 294, 337
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	175, 294, 337
Vha464I	CTTAAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.