FvH4_5g28670

autophagy protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
19845359 .. 19850195
4837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28670.t2

Sequence Viewer

Length: 1089 bp
ATGACGAGAAGAAGAAAAGAACAGAAAATCGGAATGATGGAGAAGGAAGCACAGAGGGTTGTATGGGAAGGAGCAATTCCTTTGCAGATTCATCTCCATGAATCCGAAGTGACGACTCTTCCTTCTCCCCCACCCGCCCTGATCTTAGCTCCTCGTCTTGGATACCTTCCGCTGTTGGGCTCCCTCTTAAAGCCTTACTTCAGGTCCGCCCTTCCTCCTGGTGTCGACACTGTATGGTTCGACTACCGAGGCTTGCCCTTGAAGTGGTATATACCAACTGGAGTTCTTTTTGATCTTCTCTGTGCACAACCTGAGAGACCTTGGAATTTAACGGTGCACTTTAGAGGATATCCTGGAAACATATTGATCCCTTGTGAAGGTGAAGATAGCATAAAGTGGAGCTATATCAACTCTTTGAAAGAGGCAGCATATATAATCAATGGAAGCTGCAAGAATGTGATGAGCATGTCTCAACCTGATCAGGTGGAGCTCTGGCGCTCTGTCTTAAATGGTAATTTGGAAGCCTACCTATGTGTATCTTCTAAGCTTAAGCTTGGAGCAGTTGGTGAAGTAAACTTGAGCTCGCCAAGATCCCGACCGAGTATGGGTGAAATTGATGTTTCTGGGCAGGTGAAGCAAGGCCGAGTTCCTGTTCGTTTATATGTTTGGAATGTCTGTGAGGACTTTGATGACTTAGAAGATGCACCACCTATTGATAGTTGGGATAAAGTTTCTTACATAAACCGGCCTGTTGAGATACAAGGAGAAGGTAGATGCTTCACGTTACTTGATGCTGTGAAAAGCCTTCTGCCAGATTATTTTGTGGACAACTCCTTGGGCAGTGCTGAATCATTGACAGTAGGTGGTGAGGAAGAGCAAAGAGTTCCATCCAAAGATGCAAGTGATGATAAAAAAGCCGGAGAGGATGACCATGTAAAGGCTAGTAATGAATTTGAAGAGCCTGAAATCAAGCTGGTCCGTATACAAGGTATTGAACCGAAACTGGAAATACCATTTTCTTGGGTGGCAAACAACTTAATGCACCCAGAGCACTTCCTTCATATTTGTGTATACCTGAAAGTACCATAA

Protein Analysis

363

Amino Acids

40.78

Weight (kDa)

5.19

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG5_UblA PF20638 21 - 114 4.2e-28 Autophagy protein ATG5, UblA domain
ATG5_HBR PF20637 128 - 184 5.5e-22 Autophagy protein ATG5, alpha-helical bundle region
ATG5_UblB PF04106 210 - 314 1.9e-15 Autophagy protein ATG5, UblB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 619
AccI GTMKAC 3 cut(s) 225, 982, 1071
AciI CCGC 3 cut(s) 135, 170, 207
AclWI GGATC 2 cut(s) 361, 585
AcsI RAATTY 2 cut(s) 325, 950
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 1 cut(s) 1083
AfiI CCNNNNNNNGG 6 cut(s) 158, 176, 264, 377, 605, 937
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 4 cut(s) 262, 418, 956, 995
AjnI CCWGG 2 cut(s) 217, 352
AluBI AGCT 8 cut(s) 149, 402, 447, 490, 547, 553, 582, 973
AluI AGCT 8 cut(s) 149, 402, 447, 490, 547, 553, 582, 973
Alw21I GWGCWC 5 cut(s) 307, 339, 492, 584, 1053
Alw26I GTCTC 2 cut(s) 310, 474
Alw44I GTGCAC 2 cut(s) 303, 335
AlwI GGATC 2 cut(s) 361, 585
AoxI GGCC 2 cut(s) 640, 746
ApaLI GTGCAC 2 cut(s) 303, 335
ApeKI GCWGC 2 cut(s) 425, 447
ApoI RAATTY 2 cut(s) 325, 950
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 204, 976
AsuHPI GGTGA 5 cut(s) 392, 578, 620, 643, 878
AvaII GGWCC 2 cut(s) 204, 976
BaeGI GKGCMC 2 cut(s) 307, 339
BanII GRGCYC 3 cut(s) 182, 492, 584
Bbv12I GWGCWC 5 cut(s) 307, 339, 492, 584, 1053
BbvI GCAGC 2 cut(s) 434, 437
BccI CCATC 2 cut(s) 31, 895
BciT130I CCWGG 2 cut(s) 219, 354
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 310, 474
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 499
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 2 cut(s) 426, 448
BlsI GCNGC 2 cut(s) 427, 449
Bme1390I CCNGG 2 cut(s) 219, 354
Bme18I GGWCC 2 cut(s) 204, 976
BmgT120I GGNCC 2 cut(s) 204, 976
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 219, 354
BmsI GCATC 4 cut(s) 691, 764, 781, 886
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 247, 320, 834
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 176, 264, 377, 605, 937
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 2 cut(s) 283, 1008
BseBI CCWGG 2 cut(s) 219, 354
BseDI CCNNGG 3 cut(s) 247, 320, 834
BseGI GGATG 2 cut(s) 887, 931
BseLI CCNNNNNNNGG 6 cut(s) 158, 176, 264, 377, 605, 937
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 283, 1008
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 2 cut(s) 307, 339
BseXI GCAGC 2 cut(s) 434, 437
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 2 cut(s) 642, 748
BsiEI CGRYCG 1 cut(s) 599
BsiHKAI GWGCWC 5 cut(s) 307, 339, 492, 584, 1053
BsiSI CCGG 2 cut(s) 745, 918
BslI CCNNNNNNNGG 6 cut(s) 158, 176, 264, 377, 605, 937
BsmAI GTCTC 2 cut(s) 310, 474
BsnI GGCC 2 cut(s) 642, 748
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 6 cut(s) 182, 307, 339, 492, 584, 1053
Bsp143I GATC 5 cut(s) 141, 292, 366, 478, 590
BspACI CCGC 3 cut(s) 135, 170, 207
BspANI GGCC 2 cut(s) 642, 748
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 2 cut(s) 361, 585
BspQI GCTCTTC 2 cut(s) 867, 951
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 744
BsrI ACTGG 2 cut(s) 283, 1008
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 3 cut(s) 247, 320, 834
BssMI GATC 5 cut(s) 141, 292, 366, 478, 590
BssNAI GTATAC 2 cut(s) 983, 1072
BssT1I CCWWGG 2 cut(s) 320, 834
Bst1107I GTATAC 2 cut(s) 983, 1072
Bst2UI CCWGG 2 cut(s) 219, 354
Bst4CI ACNGT 3 cut(s) 232, 334, 859
Bst6I CTCTTC 3 cut(s) 123, 867, 951
BstAFI CTTAAG 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 254, 584
BstDEI CTNAG 4 cut(s) 145, 312, 543, 694
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 887, 931
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 5 cut(s) 144, 295, 369, 481, 593
BstMAI GTCTC 2 cut(s) 310, 474
BstMBI GATC 5 cut(s) 141, 292, 366, 478, 590
BstMCI CGRYCG 1 cut(s) 599
BstMWI GCNNNNNNNGC 2 cut(s) 634, 1048
BstNI CCWGG 2 cut(s) 219, 354
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 217, 352
BstSLI GKGCMC 2 cut(s) 307, 339
BstV1I GCAGC 2 cut(s) 434, 437
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 1020
BstYI RGATCY 1 cut(s) 590
BstZ17I GTATAC 2 cut(s) 983, 1072
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 642, 748
BtsCI GGATG 2 cut(s) 887, 931
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 2 cut(s) 228, 847
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 254, 584
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 744
Cfr13I GGNCC 2 cut(s) 204, 976
Csp6I GTAC 1 cut(s) 1082
CviAII CATG 3 cut(s) 98, 466, 932
CviQI GTAC 1 cut(s) 1082
DdeI CTNAG 4 cut(s) 145, 312, 543, 694
DpnI GATC 5 cut(s) 143, 294, 368, 480, 592
DpnII GATC 5 cut(s) 141, 292, 366, 478, 590
Eam1104I CTCTTC 3 cut(s) 123, 867, 951
EarI CTCTTC 3 cut(s) 123, 867, 951
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 2 cut(s) 490, 582
Eco130I CCWWGG 2 cut(s) 320, 834
Eco24I GRGCYC 3 cut(s) 182, 492, 584
Eco31I GGTCTC 1 cut(s) 310
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 204, 976
Eco53kI GAGCTC 2 cut(s) 490, 582
Eco57I CTGAAG 1 cut(s) 184
EcoICRI GAGCTC 2 cut(s) 490, 582
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 217, 352
EcoRV GATATC 1 cut(s) 350
EcoT14I CCWWGG 2 cut(s) 320, 834
EcoT38I GRGCYC 3 cut(s) 182, 492, 584
ErhI CCWWGG 2 cut(s) 320, 834
FaeI CATG 3 cut(s) 101, 469, 935
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 3 cut(s) 97, 465, 931
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 3 cut(s) 225, 982, 1071
Fnu4HI GCNGC 2 cut(s) 426, 448
FokI GGATG 2 cut(s) 874, 938
FriOI GRGCYC 3 cut(s) 182, 492, 584
Fsp4HI GCNGC 2 cut(s) 426, 448
FspBI CTAG 1 cut(s) 942
GlaI GCGC 1 cut(s) 497
GluI GCNGC 2 cut(s) 426, 448
GsuI CTGGAG 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 2 cut(s) 642, 748
HapII CCGG 2 cut(s) 745, 918
HhaI GCGC 1 cut(s) 498
Hin1II CATG 3 cut(s) 101, 469, 935
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 2 cut(s) 545, 551
HinfI GANTC 4 cut(s) 88, 101, 115, 848
HpaII CCGG 2 cut(s) 745, 918
HphI GGTGA 5 cut(s) 392, 578, 620, 643, 878
Hpy166II GTNNAC 7 cut(s) 226, 305, 337, 574, 826, 983, 1072
Hpy188I TCNGA 2 cut(s) 32, 106
Hpy188III TCNNGA 1 cut(s) 594
Hpy8I GTNNAC 7 cut(s) 226, 305, 337, 574, 826, 983, 1072
HpyAV CCTTC 9 cut(s) 37, 62, 132, 176, 221, 371, 761, 815, 1067
HpyCH4III ACNGT 3 cut(s) 232, 334, 859
HpyCH4IV ACGT 1 cut(s) 782
HpyCH4V TGCA 7 cut(s) 85, 305, 337, 450, 704, 899, 1042
HpyF10VI GCNNNNNNNGC 2 cut(s) 634, 1048
HpyF3I CTNAG 4 cut(s) 145, 312, 543, 694
HpySE526I ACGT 1 cut(s) 782
Hsp92II CATG 3 cut(s) 101, 469, 935
HspAI GCGC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 141, 292, 366, 478, 590
LguI GCTCTTC 2 cut(s) 867, 951
LmnI GCTCC 6 cut(s) 71, 154, 185, 399, 487, 557
Lsp1109I GCAGC 2 cut(s) 434, 437
LweI GCATC 4 cut(s) 691, 764, 781, 886
MaeI CTAG 1 cut(s) 942
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 2 cut(s) 109, 783
MalI GATC 5 cut(s) 143, 294, 368, 480, 592
MboI GATC 5 cut(s) 141, 292, 366, 478, 590
MboII GAAGA 9 cut(s) 21, 24, 110, 287, 395, 531, 710, 884, 968
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 6 cut(s) 182, 307, 339, 492, 584, 1053
MluCI AATT 5 cut(s) 75, 325, 514, 612, 950
MlyI GAGTC 1 cut(s) 109
MseI TTAA 5 cut(s) 188, 329, 506, 549, 1037
MslI CAYNNNNRTG 2 cut(s) 96, 1065
MspA1I CMGCKG 1 cut(s) 172
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 2 cut(s) 745, 918
MspR9I CCNGG 2 cut(s) 219, 354
MvaI CCWGG 2 cut(s) 219, 354
MwoI GCNNNNNNNGC 2 cut(s) 634, 1048
NdeII GATC 5 cut(s) 141, 292, 366, 478, 590
NlaIII CATG 3 cut(s) 101, 469, 935
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 619
PciSI GCTCTTC 2 cut(s) 867, 951
PfeI GAWTC 3 cut(s) 88, 101, 848
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 2 cut(s) 427, 449
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp124BI GAGCTC 2 cut(s) 492, 584
Psp6I CCWGG 2 cut(s) 217, 352
PspGI CCWGG 2 cut(s) 217, 352
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 204, 976
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 1 cut(s) 1083
RsaNI GTAC 1 cut(s) 1082
RseI CAYNNNNRTG 2 cut(s) 96, 1065
SacI GAGCTC 2 cut(s) 492, 584
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 2 cut(s) 867, 951
SaqAI TTAA 5 cut(s) 188, 329, 506, 549, 1037
SatI GCNGC 2 cut(s) 426, 448
Sau3AI GATC 5 cut(s) 141, 292, 366, 478, 590
Sau96I GGNCC 2 cut(s) 204, 976
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 219, 354
SduI GDGCHC 6 cut(s) 182, 307, 339, 492, 584, 1053
SfaNI GCATC 4 cut(s) 691, 764, 781, 886
SinI GGWCC 2 cut(s) 204, 976
SmiMI CAYNNNNRTG 2 cut(s) 96, 1065
SmlI CTYRAG 2 cut(s) 548, 577
SmoI CTYRAG 2 cut(s) 548, 577
Sse9I AATT 5 cut(s) 75, 325, 514, 612, 950
SsiI CCGC 3 cut(s) 135, 170, 207
SspMI CTAG 1 cut(s) 942
SstI GAGCTC 2 cut(s) 492, 584
StyD4I CCNGG 2 cut(s) 217, 352
StyI CCWWGG 2 cut(s) 320, 834
TaaI ACNGT 3 cut(s) 232, 334, 859
TaiI ACGT 1 cut(s) 785
TaqI TCGA 2 cut(s) 225, 240
TaqII GACCGA 1 cut(s) 613
TasI AATT 5 cut(s) 75, 325, 514, 612, 950
TfiI GAWTC 3 cut(s) 88, 101, 848
Tru1I TTAA 5 cut(s) 188, 329, 506, 549, 1037
Tru9I TTAA 5 cut(s) 188, 329, 506, 549, 1037
TscAI CASTG 2 cut(s) 235, 847
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 425, 447
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 80, 114, 963, 1049
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 2 cut(s) 235, 847
Vha464I CTTAAG 1 cut(s) 548
VneI GTGCAC 2 cut(s) 303, 335
VpaK11BI GGWCC 2 cut(s) 204, 976
XagI CCTNNNNNAGG 1 cut(s) 375
XapI RAATTY 2 cut(s) 325, 950
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 3 cut(s) 225, 982, 1071
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.