AT5G18470

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001889
Physical Location & Seq
Forward (+)
6127773 .. 6129285
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18470.1

Sequence Viewer

Length: 1242 bp
ATGGCTCTTTCAATCGTTCTTCTTCCCTTCATTCTCATTCTCATACCGACTTTTCTCAGTTCGGTTTTCGCCGTTTCACCACTCAAAACTGATACGTTAAAACCGGGGCAGCAGCTCAGAGACTGGGAGCAGTTGATCTCTGCGGATGGTATCTTCACTCTCGGATTCTTTACACCTAAAGACTCATCTACTTCCGAACTCGGGTCAGCTGGTCTTAGATATCTTGGTATTTGGCCTCAAAGTATTCCAATAAATCTAGTTTGGGTGGGTAACCCAACCGAATCAGTTTCTGATTCATCTGGTTCTCTATCCATTGACACCAATGGGGTTCTAAAGATAACACAGGCAAACGCTATTCCAATCTTGGTGAACCAAAGACCAGCCGCGCAGCTTTCATTGGTCGGGAATGTGTCTGCCATTTTACTCGATACCGGGAACTTTGTGGTCCGAGAGATCAGGCCAGGAGGAGTTCCGGGTCGTGTTCTATGGCAAAGCTTTGACCATCCCACAAACACATTACTTCCCGGGATGAAGATTGGGTTTAACCTAAGAACCAAGAAAGAAGTATCAGTTACGTCTTGGATAACTGACCAAGTCCCAGTCCCAGGAGCATTCAGACTAGGACTAGACCCATCAGGAGCTAACCAGTTACTCGTCTGGCGCCGCGGGGAAATCTACTGGTCCAGTGGAATCTTGACGAACAATGGAAGCTCTCATTTGAACTTAGAAGTATCCAGACACTACATTGATTATGAATTCAAGTTCGATTCAAATAAGTACATGAAGTACTTCAGCTACTCAATCAAGAAAGCTAATAGTTCGGTCTTTTCCAGCTGGTTCTTGGATACTCTAGGCCAAATCACTGTAACCTTTTCTCTCAGCAGTAACAATAGCAGCACCTGGATTTCCGAAAGCAGTGAACCCTGCAAGACGGATTTAAAGAACAGTTCAGCAATCTGCATCACGGAGAAGCCAACGGCTTGTAGGAAAGGGTCAGAGTATTTCGAACCCAGAAGAGGATACATGATGGAAAATAATACCGGTTATTATCCATTTTACTATGACGATAGTTTGAGCGCTGGTCTTAGCGACTGTCATGGAACCTGCTGGAGAAACTGTTCTTGCATAGCTTTCCAAGCCTTTCCTGATGGATGCCAATATTGGGAAAAAGGATCAAAGTTTGTTCCTTATGATAGCTTCAACTCCAATTTAGTAACTTATGTTCTTGATTCTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

413

Amino Acids

45.81

Weight (kDa)

6.45

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 86 - 194 1.2e-23 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1112
AccB1I GGYRCC 1 cut(s) 660
AccII CGCG 2 cut(s) 386, 666
AciI CCGC 4 cut(s) 143, 384, 664, 666
AclWI GGATC 1 cut(s) 1180
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 775
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 2 cut(s) 779, 788
AfeI AGCGCT 1 cut(s) 1078
AfiI CCNNNNNNNGG 4 cut(s) 201, 605, 1016, 1162
AgeI ACCGGT 1 cut(s) 1040
AgsI TTSAA 5 cut(s) 12, 721, 760, 771, 1201
AjnI CCWGG 3 cut(s) 460, 604, 899
AloI GAACNNNNNNTCC 2 cut(s) 1102, 1134
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 1180
AlwNI CAGNNNCTG 3 cut(s) 123, 290, 900
Ama87I CYCGRG 2 cut(s) 200, 524
Aor51HI AGCGCT 1 cut(s) 1078
AoxI GGCC 3 cut(s) 233, 458, 853
ApeKI GCWGC 4 cut(s) 109, 112, 388, 894
ApoI RAATTY 1 cut(s) 755
AsiGI ACCGGT 1 cut(s) 1040
Asp700I GAANNNNTTC 2 cut(s) 788, 1117
AspLEI GCGC 3 cut(s) 388, 663, 1079
AspS9I GGNCC 2 cut(s) 445, 681
AsuC2I CCSGG 5 cut(s) 105, 433, 474, 525, 526
AsuHPI GGTGA 2 cut(s) 69, 379
AsuII TTCGAA 1 cut(s) 1005
AvaI CYCGRG 2 cut(s) 200, 524
AvaII GGWCC 2 cut(s) 445, 681
BanI GGYRCC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 121, 124, 400, 906
BccI CCATC 5 cut(s) 140, 510, 640, 1021, 1142
BceAI ACGGC 2 cut(s) 56, 993
BciT130I CCWGG 3 cut(s) 462, 606, 901
BciVI GTATCC 3 cut(s) 742, 838, 1013
BcnI CCSGG 5 cut(s) 105, 433, 474, 525, 526
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 4 cut(s) 257, 620, 626, 851
BfoI RGCGCY 2 cut(s) 664, 1080
BfuAI ACCTGC 1 cut(s) 1112
BfuI GTATCC 3 cut(s) 742, 838, 1013
BisI GCNGC 6 cut(s) 110, 113, 384, 389, 664, 895
BlsI GCNGC 6 cut(s) 111, 114, 385, 390, 665, 896
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 8 cut(s) 105, 433, 462, 474, 525, 526, 606, 901
Bme18I GGWCC 2 cut(s) 445, 681
BmeT110I CYCGRG 2 cut(s) 200, 524
BmgT120I GGNCC 2 cut(s) 445, 681
BmiI GGNNCC 2 cut(s) 662, 1102
BmrFI CCNGG 8 cut(s) 105, 433, 462, 474, 525, 526, 606, 901
BmrI ACTGGG 2 cut(s) 133, 593
BmsI GCATC 2 cut(s) 969, 1142
BmuI ACTGGG 2 cut(s) 133, 593
BpmI CTGGAG 1 cut(s) 1129
Bpu14I TTCGAA 1 cut(s) 1005
BpuMI CCSGG 5 cut(s) 105, 433, 474, 525, 526
BsaHI GRCGYC 1 cut(s) 661
BsaJI CCNNGG 4 cut(s) 104, 524, 604, 664
BsaWI WCCGGW 1 cut(s) 1040
BsaXI ACNNNNNCTCC 2 cut(s) 1102, 1132
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 605, 1016, 1162
Bse118I RCCGGY 1 cut(s) 1040
Bse1I ACTGG 5 cut(s) 128, 599, 646, 683, 684
BseBI CCWGG 3 cut(s) 462, 606, 901
BseDI CCNNGG 4 cut(s) 104, 524, 604, 664
BseGI GGATG 4 cut(s) 151, 502, 534, 1157
BseLI CCNNNNNNNGG 4 cut(s) 201, 605, 1016, 1162
BseMII CTCAG 3 cut(s) 70, 130, 892
BseNI ACTGG 5 cut(s) 128, 599, 646, 683, 684
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 4 cut(s) 121, 124, 400, 906
Bsh1236I CGCG 2 cut(s) 386, 666
BshFI GGCC 3 cut(s) 235, 460, 855
BshNI GGYRCC 1 cut(s) 660
BshTI ACCGGT 1 cut(s) 1040
BsiHKCI CYCGRG 2 cut(s) 200, 524
BsiSI CCGG 5 cut(s) 104, 432, 473, 525, 1041
BslFI GGGAC 2 cut(s) 581, 587
BslI CCNNNNNNNGG 4 cut(s) 201, 605, 1016, 1162
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 581, 587
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 3 cut(s) 235, 460, 855
BsoBI CYCGRG 2 cut(s) 200, 524
Bsp119I TTCGAA 1 cut(s) 1005
Bsp143I GATC 3 cut(s) 135, 453, 1172
BspACI CCGC 4 cut(s) 143, 384, 664, 666
BspANI GGCC 3 cut(s) 235, 460, 855
BspCNI CTCAG 3 cut(s) 69, 129, 891
BspFNI CGCG 2 cut(s) 386, 666
BspLI GGNNCC 2 cut(s) 662, 1102
BspMI ACCTGC 1 cut(s) 1112
BspPI GGATC 1 cut(s) 1180
BspT104I TTCGAA 1 cut(s) 1005
BspT107I GGYRCC 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 1040
BsrI ACTGG 5 cut(s) 128, 599, 646, 683, 684
BssAI RCCGGY 1 cut(s) 1040
BssECI CCNNGG 4 cut(s) 104, 524, 604, 664
BssMI GATC 3 cut(s) 135, 453, 1172
BssNI GRCGYC 1 cut(s) 661
Bst2UI CCWGG 3 cut(s) 462, 606, 901
Bst4CI ACNGT 4 cut(s) 865, 947, 1094, 1118
Bst6I CTCTTC 1 cut(s) 1009
BstACI GRCGYC 1 cut(s) 661
BstBI TTCGAA 1 cut(s) 1005
BstDEI CTNAG 7 cut(s) 56, 116, 215, 548, 724, 878, 1085
BstDSI CCRYGG 1 cut(s) 664
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 4 cut(s) 151, 502, 534, 1157
BstFNI CGCG 2 cut(s) 386, 666
BstH2I RGCGCY 2 cut(s) 664, 1080
BstHHI GCGC 3 cut(s) 388, 663, 1079
BstKTI GATC 3 cut(s) 138, 456, 1175
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 135, 453, 1172
BstMWI GCNNNNNNNGC 1 cut(s) 1136
BstNI CCWGG 3 cut(s) 462, 606, 901
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 8 cut(s) 103, 431, 460, 472, 523, 524, 604, 899
BstUI CGCG 2 cut(s) 386, 666
BstV1I GCAGC 4 cut(s) 121, 124, 400, 906
BsuI GTATCC 3 cut(s) 742, 838, 1013
BsuRI GGCC 3 cut(s) 235, 460, 855
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 4 cut(s) 151, 502, 534, 1157
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 3 cut(s) 691, 861, 922
BveI ACCTGC 1 cut(s) 1112
CaiI CAGNNNCTG 3 cut(s) 123, 290, 900
CfoI GCGC 3 cut(s) 388, 663, 1079
Cfr10I RCCGGY 1 cut(s) 1040
Cfr13I GGNCC 2 cut(s) 445, 681
Cfr42I CCGCGG 1 cut(s) 667
Cfr9I CCCGGG 1 cut(s) 524
Csp6I GTAC 2 cut(s) 778, 787
CspAI ACCGGT 1 cut(s) 1040
CviAII CATG 3 cut(s) 781, 1024, 1097
CviQI GTAC 2 cut(s) 778, 787
DdeI CTNAG 7 cut(s) 56, 116, 215, 548, 724, 878, 1085
DinI GGCGCC 1 cut(s) 662
DpnI GATC 3 cut(s) 137, 455, 1174
DpnII GATC 3 cut(s) 135, 453, 1172
DraI TTTAAA 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 1009
EarI CTCTTC 1 cut(s) 1009
Eco32I GATATC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 445, 681
Eco47III AGCGCT 1 cut(s) 1078
Eco57I CTGAAG 1 cut(s) 775
Eco88I CYCGRG 2 cut(s) 200, 524
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 3 cut(s) 460, 604, 899
EcoRV GATATC 1 cut(s) 221
EgeI GGCGCC 1 cut(s) 662
EheI GGCGCC 1 cut(s) 662
FaeI CATG 3 cut(s) 784, 1027, 1100
FaqI GGGAC 2 cut(s) 581, 587
FatI CATG 3 cut(s) 780, 1023, 1096
FauI CCCGC 1 cut(s) 659
Fnu4HI GCNGC 6 cut(s) 110, 113, 384, 389, 664, 895
FokI GGATG 4 cut(s) 158, 489, 541, 1164
Fsp4HI GCNGC 6 cut(s) 110, 113, 384, 389, 664, 895
FspBI CTAG 4 cut(s) 257, 620, 626, 851
GlaI GCGC 3 cut(s) 387, 662, 1078
GluI GCNGC 6 cut(s) 110, 113, 384, 389, 664, 895
GsuI CTGGAG 1 cut(s) 1129
HaeII RGCGCY 2 cut(s) 664, 1080
HaeIII GGCC 3 cut(s) 235, 460, 855
HapII CCGG 5 cut(s) 104, 432, 473, 525, 1041
HhaI GCGC 3 cut(s) 388, 663, 1079
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 3 cut(s) 784, 1027, 1100
Hin6I GCGC 3 cut(s) 386, 661, 1077
HinP1I GCGC 3 cut(s) 386, 661, 1077
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 7 cut(s) 165, 182, 281, 293, 690, 767, 1229
HpaII CCGG 5 cut(s) 104, 432, 473, 525, 1041
HphI GGTGA 2 cut(s) 69, 379
Hpy166II GTNNAC 2 cut(s) 370, 920
Hpy188I TCNGA 8 cut(s) 119, 164, 196, 292, 449, 617, 910, 997
Hpy188III TCNNGA 7 cut(s) 403, 636, 694, 735, 805, 1145, 1226
Hpy8I GTNNAC 2 cut(s) 370, 920
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 4 cut(s) 865, 947, 1094, 1118
HpyCH4IV ACGT 2 cut(s) 95, 575
HpyCH4V TGCA 3 cut(s) 927, 960, 1125
HpyF10VI GCNNNNNNNGC 1 cut(s) 1136
HpyF3I CTNAG 7 cut(s) 56, 116, 215, 548, 724, 878, 1085
HpySE526I ACGT 2 cut(s) 95, 575
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 3 cut(s) 784, 1027, 1100
HspAI GCGC 3 cut(s) 386, 661, 1077
KasI GGCGCC 1 cut(s) 660
KspI CCGCGG 1 cut(s) 667
Kzo9I GATC 3 cut(s) 135, 453, 1172
LmnI GCTCC 3 cut(s) 127, 608, 638
Lsp1109I GCAGC 4 cut(s) 121, 124, 400, 906
LweI GCATC 2 cut(s) 969, 1142
MaeI CTAG 4 cut(s) 257, 620, 626, 851
MaeII ACGT 2 cut(s) 95, 575
MaeIII GTNAC 6 cut(s) 269, 571, 648, 865, 884, 1213
MalI GATC 3 cut(s) 137, 455, 1174
MboI GATC 3 cut(s) 135, 453, 1172
MboII GAAGA 5 cut(s) 11, 14, 145, 544, 1026
MluCI AATT 2 cut(s) 755, 1207
Mly113I GGCGCC 1 cut(s) 661
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 3 cut(s) 246, 458, 1010
MroXI GAANNNNTTC 2 cut(s) 788, 1117
MseI TTAA 3 cut(s) 98, 543, 938
MspA1I CMGCKG 3 cut(s) 209, 666, 834
MspI CCGG 5 cut(s) 104, 432, 473, 525, 1041
MspR9I CCNGG 8 cut(s) 105, 433, 462, 474, 525, 526, 606, 901
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 3 cut(s) 462, 606, 901
MvnI CGCG 2 cut(s) 386, 666
MwoI GCNNNNNNNGC 1 cut(s) 1136
NarI GGCGCC 1 cut(s) 661
NciI CCSGG 5 cut(s) 105, 433, 474, 525, 526
NdeII GATC 3 cut(s) 135, 453, 1172
NlaIII CATG 3 cut(s) 784, 1027, 1100
NlaIV GGNNCC 2 cut(s) 662, 1102
NspV TTCGAA 1 cut(s) 1005
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 2 cut(s) 788, 1117
PfeI GAWTC 6 cut(s) 165, 281, 293, 690, 767, 1229
PflFI GACNNNGTC 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 1040
PkrI GCNGC 6 cut(s) 111, 114, 385, 390, 665, 896
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 460, 604, 899
PspEI GGTNACC 1 cut(s) 269
PspGI CCWGG 3 cut(s) 460, 604, 899
PspN4I GGNNCC 2 cut(s) 662, 1102
PspPI GGNCC 2 cut(s) 445, 681
PsrI GAACNNNNNNTAC 2 cut(s) 1206, 1238
PstNI CAGNNNCTG 3 cut(s) 123, 290, 900
PsyI GACNNNGTC 1 cut(s) 593
PvuII CAGCTG 2 cut(s) 209, 834
RsaI GTAC 2 cut(s) 779, 788
RsaNI GTAC 2 cut(s) 778, 787
SacII CCGCGG 1 cut(s) 667
SaqAI TTAA 3 cut(s) 98, 543, 938
SatI GCNGC 6 cut(s) 110, 113, 384, 389, 664, 895
Sau3AI GATC 3 cut(s) 135, 453, 1172
Sau96I GGNCC 2 cut(s) 445, 681
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 8 cut(s) 105, 433, 462, 474, 525, 526, 606, 901
SfaNI GCATC 2 cut(s) 969, 1142
SfoI GGCGCC 1 cut(s) 662
Sfr303I CCGCGG 1 cut(s) 667
SfuI TTCGAA 1 cut(s) 1005
SgrBI CCGCGG 1 cut(s) 667
SinI GGWCC 2 cut(s) 445, 681
SmaI CCCGGG 1 cut(s) 526
Sse9I AATT 2 cut(s) 755, 1207
SsiI CCGC 4 cut(s) 143, 384, 664, 666
SspDI GGCGCC 1 cut(s) 660
SspI AATATT 1 cut(s) 1160
SspMI CTAG 4 cut(s) 257, 620, 626, 851
StyD4I CCNGG 8 cut(s) 103, 431, 460, 472, 523, 524, 604, 899
TaaI ACNGT 4 cut(s) 865, 947, 1094, 1118
TaiI ACGT 2 cut(s) 98, 578
TaqI TCGA 3 cut(s) 426, 765, 1005
TaqII GACCGA 1 cut(s) 811
TasI AATT 2 cut(s) 755, 1207
TatI WGTACW 2 cut(s) 777, 786
TauI GCSGC 2 cut(s) 386, 666
TfiI GAWTC 6 cut(s) 165, 281, 293, 690, 767, 1229
Tru1I TTAA 3 cut(s) 98, 543, 938
Tru9I TTAA 3 cut(s) 98, 543, 938
TscAI CASTG 3 cut(s) 691, 868, 922
TseI GCWGC 4 cut(s) 109, 112, 388, 894
TspDTI ATGAA 6 cut(s) 19, 285, 384, 545, 768, 797
TspGWI ACGGA 2 cut(s) 947, 980
TspMI CCCGGG 1 cut(s) 524
TspRI CASTG 3 cut(s) 691, 868, 922
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 445, 681
XapI RAATTY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmaI CCCGGG 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 788, 1117
XspI CTAG 4 cut(s) 257, 620, 626, 851
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.