Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Forward (+)

35406021 .. 35406624

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0323500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCAGGACGTCCGTACACCTCCCTCCTGCTGCTGCTTTCTCTGCTTCTTCTAGTCACACTCTCTCCTGTGGCTGAGGTATATTATCAATTTCATCCTTGCATCTTCAAACATGCATGTAAACAGCTTACACCAAGCTTCGTCCTCAAGATTGCAAACCAAAATGTACGTATCGGTGCTCGGCGACATCGCACAAGAAGCCATGCAAGTTCTTCTGCGAAAAGTGCTGTGCCAAATGCCTTTGTGTACCTCCAGGAACTTACGGCCACAAGCAAGTATGCCCTTGCTACAACAACTGGAAGACCCAAGAAGGAAAACCCAAATGCCCTTGATTCAAATTCCTTCTGCGGCCCCAAAATTAGTAGTAATAAAGCATACAATTGCTTCCATTTCTGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

133

Amino Acids

14.76

Weight (kDa)

9.89

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	3 cut(s)	17, 168, 248
AgsI	TTSAA	2 cut(s)	109, 336
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	127, 138
AluI	AGCT	2 cut(s)	127, 138
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	264, 349
ApeKI	GCWGC	2 cut(s)	31, 34
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	18, 21
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	3 cut(s)	32, 35, 349
BlsI	GCNGC	3 cut(s)	33, 36, 350
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	18, 21
BshFI	GGCC	2 cut(s)	266, 351
BsiHKAI	GWGCWC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	266, 351
Bsp1286I	GDGCHC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	266, 351
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 198, 224
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	116, 120
BstSCI	CCNGG	1 cut(s)	252
BstSNI	TACGTA	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	18, 21
BstV2I	GAAGAC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	266, 351
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	16, 167, 247
CviAII	CATG	3 cut(s)	113, 117, 203
CviJI	RGCY	6 cut(s)	74, 127, 138, 201, 266, 351
CviKI_1	RGCY	6 cut(s)	74, 127, 138, 201, 266, 351
CviQI	GTAC	3 cut(s)	16, 167, 247
DdeI	CTNAG	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	264
Eco105I	TACGTA	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	3 cut(s)	116, 120, 206
FaiI	YATR	6 cut(s)	82, 114, 118, 204, 279, 376
FatI	CATG	3 cut(s)	112, 116, 202
Fnu4HI	GCNGC	3 cut(s)	32, 35, 349
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	32, 35, 349
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	3 cut(s)	32, 35, 349
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	266, 351
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	116, 120, 206
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	18, 122, 247
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	3 cut(s)	18, 122, 247
HpyAV	CCTTC	2 cut(s)	304, 352
HpyCH4IV	ACGT	2 cut(s)	10, 169
HpyCH4V	TGCA	4 cut(s)	102, 116, 155, 206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 198, 224
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	10, 169
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	116, 120, 206
LpnPI	CCDG	5 cut(s)	41, 81, 239, 266, 282
Lsp1109I	GCAGC	2 cut(s)	18, 21
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	10, 169
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	4 cut(s)	41, 97, 204, 312
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	89, 337, 357, 379
MnlI	CCTC	5 cut(s)	31, 35, 70, 155, 260
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	43, 198, 224
NlaIII	CATG	3 cut(s)	116, 120, 206
NlaIV	GGNNCC	1 cut(s)	352
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	2 cut(s)	116, 120
PfeI	GAWTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	33, 36, 350
Ppu21I	YACGTR	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	350
RsaI	GTAC	3 cut(s)	17, 168, 248
RsaNI	GTAC	3 cut(s)	16, 167, 247
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	3 cut(s)	32, 35, 349
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	13, 23, 81, 129, 140, 172, 252
SfaNI	GCATC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	170
Sse9I	AATT	4 cut(s)	89, 337, 357, 379
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	252
TaiI	ACGT	2 cut(s)	13, 172
TasI	AATT	4 cut(s)	89, 337, 357, 379
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	31, 34
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	83
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	116, 120
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.