Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Reverse (-)

2635536 .. 2635865

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAATTTAAACGATTGCAGGCTTGGGATTTGTGGAAACAAGGTGACACTCAAGAGCTAAAGGATGCGTCGTTAGACTCGTGCCCTGAAGACGAAGTTTTGAAGTTTATTCATTTGAGTCTGCTATGTGTGCAAGAGTATGCAGCTGATAGACCTACCATGGCAGAAGTCGTATCCATGCTCACAAGCGATTCCATGTTTTTCCCTGATCCGAAGCAACCTGCATACCACATTTCGAGAAGTGAAGTTGCGTCATCGAGGCCTGATGGGAGGCGACCGGACATGGGTTCAGCAGATTACGTGCCCATAACTGTGATGGAAGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

4.91

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	58, 146
AluI	AGCT	2 cut(s)	58, 146
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	2 cut(s)	86, 306
BauI	CACGAG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	260, 310
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseSI	GKGCMC	2 cut(s)	86, 306
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	86, 306
Bsp143I	GATC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	86, 306
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	21
CseI	GACGC	2 cut(s)	57, 240
CviAII	CATG	4 cut(s)	160, 178, 196, 283
CviJI	RGCY	5 cut(s)	23, 58, 146, 262, 323
CviKI_1	RGCY	5 cut(s)	23, 58, 146, 262, 323
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	163, 181, 199, 286
FaiI	YATR	8 cut(s)	127, 141, 161, 179, 197, 226, 284, 308
FatI	CATG	4 cut(s)	159, 177, 195, 282
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	2 cut(s)	57, 240
Hin1II	CATG	4 cut(s)	163, 181, 199, 286
HinfI	GANTC	3 cut(s)	77, 118, 191
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	53, 237
Hpy99I	CGWCG	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	19, 133, 143, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	163, 181, 199, 286
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	5, 99, 219, 234, 276, 291, 310
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	86, 306
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	71, 127
MnlI	CCTC	2 cut(s)	252, 264
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	163, 181, 199, 286
NmuCI	GTSAC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	71, 126
PpsI	GAGTC	2 cut(s)	71, 126
Ppu21I	YACGTR	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	71, 127
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	86, 306
SetI	ASST	7 cut(s)	46, 60, 148, 157, 223, 303, 329
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	262
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	236, 257
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	17, 101
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.