Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421003.1

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Reverse (-)

196 .. 1294

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgcagtccactttaactctcaacggtactacttattgggcgagcacagaagctagtccatgcacattcaacttgactaatccggaagccctgtgcatagaggagaagccctctgaatgcaggaatggctcggaaggacttgtaccagtaagaggctattttgatggaaacgaaattttacatcatgacaacaatactaaaatgactgttagtgattgccatgctacttgctggagtgactgcacctgtattgcctacaaaagtatatataccaatgggactgggtgtgtatttatgagtggagaagcgaaatttatcccgaatagttactttgatgctacttatgtccttgagatatggaatcatagcaaagatggaacaccagtagaaggaagcaaaacgagcgatttaacacgagatataaagaaaaaatggtggatatggtgcatcgcaggtcttatatttatcatggcagtgctattatgttgcttgtactacagaaagaaaagaaaactaggactcatgagacacactggccaagagcaaggattagatgagttgagatctcaaattaccagattcggccacatatacaagctcaaaataggtgaaagaataggacagaactttcggatgttcagtttttcagaagtagtggctgcaacagataacttctcgtctgccagcaagctaggacagggtgggtttgggcctgtttataaggtagtcttttcttcttccgtttggctggaaggcgactccaagattatcaaacaatggcagtctgaatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

264

Amino Acids

29.76

Weight (kDa)

7.49

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
Acc36I	ACCTGC	1 cut(s)	443
AccIII	TCCGGA	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	535, 583
AcsI	RAATTY	2 cut(s)	174, 311
AfaI	GTAC	3 cut(s)	28, 144, 494
AfiI	CCNNNNNNNGG	2 cut(s)	152, 389
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	3 cut(s)	53, 598, 691
AluI	AGCT	3 cut(s)	53, 598, 691
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	520
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	3 cut(s)	535, 583, 710
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	174, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	2 cut(s)	158, 368
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	3 cut(s)	54, 515, 692
BfmI	CTRYAG	1 cut(s)	496
BfuAI	ACCTGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	710
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	325, 456
BmuI	ACTGGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 389
Bse1I	ACTGG	4 cut(s)	146, 286, 383, 538
BseAI	TCCGGA	1 cut(s)	82
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	152, 389
BseNI	ACTGG	4 cut(s)	146, 286, 383, 538
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	537, 585, 712
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	152, 389
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	537, 585, 712
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	537, 585, 712
BspEI	TCCGGA	1 cut(s)	82
BspHI	TCATGA	2 cut(s)	184, 522
BspMI	ACCTGC	1 cut(s)	443
BsrI	ACTGG	4 cut(s)	146, 286, 383, 538
BssMI	GATC	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	26, 208
BstC8I	GCNNGC	3 cut(s)	43, 685, 689
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	1 cut(s)	566
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	563
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 402
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	537, 585, 712
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	480, 531
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	43, 685, 689
CciI	TCATGA	2 cut(s)	184, 522
Cfr13I	GGNCC	1 cut(s)	710
Csp6I	GTAC	3 cut(s)	27, 143, 493
CviAII	CATG	5 cut(s)	60, 185, 221, 469, 523
CviQI	GTAC	3 cut(s)	27, 143, 493
DpnI	GATC	1 cut(s)	565
DpnII	GATC	1 cut(s)	563
EaeI	YGGCCR	2 cut(s)	535, 583
FaeI	CATG	5 cut(s)	63, 188, 224, 472, 526
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	5 cut(s)	59, 184, 220, 468, 522
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	1 cut(s)	646
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	3 cut(s)	54, 515, 692
GluI	GCNGC	1 cut(s)	660
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	537, 585, 712
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	5 cut(s)	63, 188, 224, 472, 526
HinfI	GANTC	4 cut(s)	361, 519, 579, 758
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	5 cut(s)	115, 133, 633, 649, 787
Hpy188III	TCNNGA	4 cut(s)	83, 185, 319, 523
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	128, 383, 746
HpyCH4III	ACNGT	2 cut(s)	26, 208
HpyCH4V	TGCA	7 cut(s)	4, 63, 96, 120, 243, 447, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 402
Hsp92II	CATG	5 cut(s)	63, 188, 224, 472, 526
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	563
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	325, 456
MaeI	CTAG	3 cut(s)	54, 515, 692
MaeIII	GTNAC	2 cut(s)	236, 326
MalI	GATC	1 cut(s)	565
MboI	GATC	1 cut(s)	563
MboII	GAAGA	2 cut(s)	726, 729
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	3 cut(s)	174, 311, 570
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	513, 752
MnlI	CCTC	3 cut(s)	94, 121, 146
Mox20I	TGGCCA	1 cut(s)	537
MroI	TCCGGA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	14, 410
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	126, 402
NdeII	GATC	1 cut(s)	563
NlaIII	CATG	5 cut(s)	63, 188, 224, 472, 526
NmuCI	GTSAC	1 cut(s)	236
PagI	TCATGA	2 cut(s)	184, 522
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	361, 579
PkrI	GCNGC	1 cut(s)	661
PleI	GAGTC	2 cut(s)	513, 752
PpsI	GAGTC	2 cut(s)	513, 752
PsiI	TTATAA	1 cut(s)	720
PspPI	GGNCC	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	3 cut(s)	28, 144, 494
RsaNI	GTAC	3 cut(s)	27, 143, 493
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	14, 410
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	1 cut(s)	563
Sau96I	GGNCC	1 cut(s)	710
SchI	GAGTC	2 cut(s)	513, 752
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	55, 248, 457, 600, 610, 693, 726
SfaNI	GCATC	2 cut(s)	325, 456
SfcI	CTRYAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	174, 311, 570
SspMI	CTAG	3 cut(s)	54, 515, 692
TaaI	ACNGT	2 cut(s)	26, 208
TasI	AATT	3 cut(s)	174, 311, 570
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	361, 579
Tru1I	TTAA	2 cut(s)	14, 410
Tru9I	TTAA	2 cut(s)	14, 410
TscAI	CASTG	2 cut(s)	480, 538
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	730
TspRI	CASTG	2 cut(s)	480, 538
XapI	RAATTY	2 cut(s)	174, 311
XspI	CTAG	3 cut(s)	54, 515, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.