RchiOBHm_Chr4g0389481

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
4432830 .. 4433926
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36261

Sequence Viewer

Length: 738 bp
ATGTTCAGTTTTTCAGAAGTAGTGGCTGCAACAGATAACTTCTCGTCTGCCAGCAAGCTAGGACAGGGTGGGTTTGGGCCTGTTTATAAGGGGGTATTACCAGATGGGGAACAGGTAGGAGTAAAGAGACTCGCGAGAAGTTCAGGACAAGGACTAGAAGAATTCGTGAATGAGATTACACTTATAGCTGAGCTTCAACATAGTAATCTTGTTAGGCTATTAGGTTGTTGCATTCAAGGAGAAGAAAAGATTCTGATTTACGAATTTATGGCAAATAAGAGCTTGGATGCCTTCCTATTTGACTCCACTAGAAGGAGGCAATTGGACTGGCAAACACGGGTAAACATCATTGAGGGAATTGCACAAGGACTTCTCTATCTTCATAAGCATTCTAGAGTTAGAGTCATACACAGAGATCTGAAAGCTAGTAACATTCTGCTTGATGAAAATATGAACCCTAAAATCTCAGACTTTGGAATGGCCAGAATTTTCGGACAGAATGAATCTATGGCAAATACAGTTAGAGTTGTCGGAACATACGGCTATATGTCTCCAGAGTATGCCATGAGGGGCATTTTCTCTGAAAAGTCTGATGTTTACAGTTTTGGTGTTCTACTGTTGGAGATTATAAGTGGCAAAAAGAACACTACTTTTCTTTCATCTAATGGTCTCTGCCTTATTGAACTTGTAAGTTATAATGATAAATATAAACTTAGCAGTCAATTTCTACTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

245

Amino Acids

27.42

Weight (kDa)

6.45

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 214 5.1e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 215 3.1e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 87, 629, 696
AccII CGCG 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 3 cut(s) 161, 263, 486
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 3 cut(s) 197, 236, 683
AluBI AGCT 5 cut(s) 58, 188, 193, 282, 425
AluI AGCT 5 cut(s) 58, 188, 193, 282, 425
Alw26I GTCTC 3 cut(s) 121, 555, 674
AoxI GGCC 2 cut(s) 77, 480
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 161, 263, 486
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 482
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 121, 555, 674
BfaI CTAG 6 cut(s) 59, 155, 309, 393, 426, 731
BglII AGATCT 1 cut(s) 415
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 674
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 180, 480
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 79, 482
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 3 cut(s) 121, 555, 674
BsmI GAATGC 2 cut(s) 231, 388
BsnI GGCC 2 cut(s) 79, 482
Bso31I GGTCTC 1 cut(s) 674
Bsp143I GATC 1 cut(s) 415
Bsp1720I GCTNAGC 1 cut(s) 189
Bsp68I TCGCGA 1 cut(s) 134
BspANI GGCC 2 cut(s) 79, 482
BspCNI CTCAG 2 cut(s) 181, 479
BspFNI CGCG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 674
BsrI ACTGG 1 cut(s) 332
BssMI GATC 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 520, 602, 618
BstC8I GCNNGC 2 cut(s) 52, 56
BstDEI CTNAG 3 cut(s) 189, 466, 713
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 3 cut(s) 121, 555, 674
BstMBI GATC 1 cut(s) 415
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 2 cut(s) 79, 482
BtsCI GGATG 1 cut(s) 292
BtuMI TCGCGA 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 52, 56
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 565
DdeI CTNAG 3 cut(s) 189, 466, 713
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 161
FaeI CATG 1 cut(s) 568
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 6 cut(s) 59, 155, 309, 393, 426, 731
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 79, 482
Hin1II CATG 1 cut(s) 568
HinfI GANTC 5 cut(s) 129, 250, 302, 402, 503
Hpy166II GTNNAC 2 cut(s) 343, 598
Hpy188I TCNGA 8 cut(s) 16, 255, 420, 469, 494, 533, 583, 592
Hpy188III TCNNGA 5 cut(s) 133, 144, 166, 393, 554
Hpy8I GTNNAC 2 cut(s) 343, 598
HpyAV CCTTC 2 cut(s) 301, 306
HpyCH4III ACNGT 3 cut(s) 520, 602, 618
HpyCH4V TGCA 3 cut(s) 29, 231, 362
HpyF3I CTNAG 3 cut(s) 189, 466, 713
Hsp92II CATG 1 cut(s) 568
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 9 cut(s) 50, 64, 93, 98, 114, 129, 313, 496, 567
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 277
MaeI CTAG 6 cut(s) 59, 155, 309, 393, 426, 731
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 170, 254, 371
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 1 cut(s) 415
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 6 cut(s) 161, 263, 320, 357, 486, 722
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 3 cut(s) 123, 296, 411
MmeI TCCRAC 2 cut(s) 511, 600
MnlI CCTC 3 cut(s) 309, 346, 561
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 482
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 2 cut(s) 231, 388
MvnI CGCG 1 cut(s) 134
NdeII GATC 1 cut(s) 415
NlaIII CATG 1 cut(s) 568
NruI TCGCGA 1 cut(s) 134
PctI GAATGC 2 cut(s) 231, 388
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 250, 503
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 3 cut(s) 123, 296, 410
PpsI GAGTC 3 cut(s) 123, 296, 410
PsiI TTATAA 3 cut(s) 87, 629, 696
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 415
RruI TCGCGA 1 cut(s) 134
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 3 cut(s) 123, 296, 411
SetI ASST 7 cut(s) 60, 117, 190, 195, 226, 284, 427
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 6 cut(s) 161, 263, 320, 357, 486, 722
SspMI CTAG 6 cut(s) 59, 155, 309, 393, 426, 731
TaaI ACNGT 3 cut(s) 520, 602, 618
TasI AATT 6 cut(s) 161, 263, 320, 357, 486, 722
TfiI GAWTC 2 cut(s) 250, 503
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 371, 459, 467, 516, 648
XapI RAATTY 3 cut(s) 161, 263, 486
XbaI TCTAGA 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 6 cut(s) 59, 155, 309, 393, 426, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.