Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Reverse (-)

2641349 .. 2642902

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCAACACACCAGCCAAGAGCAAGGATTAAATGAGTTGAGATCCCAAATTACCAGAATCGGCAATGTACACAGGCTCAAACTAGGCAAAAGTATAGGCCAGGAGTTTCAGATGTTGAGTTTCTCTGGAATAGTAGCTGCAACGAATAATTTCTCATCTGCCAGCAAGCTCGGAGAGGGTGGTTTTGGACCAGTTTACAAGGGTGTGTTACCAGATGGCCAACAGGTAGCAGTAAAGAGACTAGCAAGAAATTCGGGACAGGGACTAGAAGAATTCAGGAACGAGATTACACTTATAGCTGAACTTCAACACAGAAATCTTGTTCGGATTCTTGGTTGTTGCATTCAAGGAGAAGAGAAGATTCTGATCTATGAGTACCTGACGAATGCAAGCTTGGACGCCTTCCTTTTCGATTCAACTAAAGGGAAGCGTTTAGATTGGCAACAACGCGTGAACATAATCGAAGGGATTGCGCAAGGACTTCTCTATCTTCACAAGTATTCTAGAGTTAGAATAATACACAGAGATATGAAAGCTAGCAACATTTTACTTGACGGAAACATGAATCCTAAGATATCAGATTTTGGAATGGCCAGAATTTTCGAACAGAATGATTCCACATCAAAGACGAAGAGAGTTGTAGGAACATACGGTTATATGTCTCCGGAGTATGCCATGAAAGGCATTTTCTCTGACAAGTCCGATGTTTACAGCTTCGGAGTTCTATTGCTGGAGATTGTGAGTGGCAAAAAGAACACTGTTTTCGTTTCATCTACTGCTCTTAGCCTCGTTGAACTGGCTTGGGATTTGTGGAAACAAGGTGACACTCAAGAGCTAAAGGATGCGTCGTTAGACTCGTGCCCTGAAGACGAAGTTTTGAAGTTTATTCATTTGAGTCTGCTATGTGCGCAAGAGTATGCAGCTGATAGACCTACCATGGCGGAAGTCGTATCCATGCTCACAAGCGATTCCATGTTTTTCCCTGATCCGAAGCAACCTGCATACCACATTTCGAGAAGTGAAGTTGCGTCATCGATGCCTGATGGGAGGCGACCGGACATGGGTTCAGCAGATTATGTGCCCATAACTGTGATGGAAGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

369

Amino Acids

41.09

Weight (kDa)

6.21

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	474, 909
Acc36I	ACCTGC	1 cut(s)	1006
AccII	CGCG	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	1 cut(s)	941
AclWI	GGATC	2 cut(s)	36, 980
AcoI	YGGCCR	2 cut(s)	217, 591
AcsI	RAATTY	3 cut(s)	250, 272, 597
AcuI	CTGAAG	1 cut(s)	885
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	69, 377
AfiI	CCNNNNNNNGG	1 cut(s)	1061
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	308, 347, 417, 794, 880
AjnI	CCWGG	2 cut(s)	99, 1100
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	8 cut(s)	137, 169, 299, 393, 536, 714, 835, 923
AluI	AGCT	8 cut(s)	137, 169, 299, 393, 536, 714, 835, 923
Alw26I	GTCTC	2 cut(s)	232, 666
AlwI	GGATC	2 cut(s)	36, 980
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	3 cut(s)	97, 217, 591
ApeKI	GCWGC	2 cut(s)	137, 920
ApoI	RAATTY	3 cut(s)	250, 272, 597
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	475, 910
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	833
AsuII	TTCGAA	1 cut(s)	603
AsuNHI	GCTAGC	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	863, 1083
BalI	TGGCCA	2 cut(s)	219, 593
BauI	CACGAG	1 cut(s)	856
BbsI	GAAGAC	1 cut(s)	873
BbvI	GCAGC	2 cut(s)	124, 932
BccI	CCATC	3 cut(s)	209, 1037, 1087
BcgI	CGANNNNNNTGC	4 cut(s)	234, 268, 452, 486
BciT130I	CCWGG	2 cut(s)	101, 1102
BciVI	GTATCC	1 cut(s)	961
BcoDI	GTCTC	2 cut(s)	232, 666
BfaI	CTAG	5 cut(s)	83, 242, 266, 504, 537
BfuAI	ACCTGC	1 cut(s)	1006
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	2 cut(s)	138, 921
BlsI	GCNGC	2 cut(s)	139, 922
Bme1390I	CCNGG	2 cut(s)	101, 1102
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	101, 1102
BmsI	GCATC	2 cut(s)	832, 1026
BmtI	GCTAGC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	873
BpmI	CTGGAG	1 cut(s)	752
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	813
Bsa29I	ATCGAT	1 cut(s)	1034
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	2 cut(s)	664, 1054
Bsc4I	CCNNNNNNNGG	1 cut(s)	1061
Bse1I	ACTGG	2 cut(s)	191, 801
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	101, 1102
BseCI	ATCGAT	1 cut(s)	1034
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	1 cut(s)	847
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	1061
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	191, 801
BseSI	GKGCMC	2 cut(s)	863, 1083
BseXI	GCAGC	2 cut(s)	124, 932
Bsh1236I	CGCG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	1055
BshFI	GGCC	3 cut(s)	99, 219, 593
BshVI	ATCGAT	1 cut(s)	1034
BsiEI	CGRYCG	1 cut(s)	1055
BsiSI	CCGG	2 cut(s)	665, 1055
BslFI	GGGAC	2 cut(s)	270, 276
BslI	CCNNNNNNNGG	1 cut(s)	1061
BsmAI	GTCTC	2 cut(s)	232, 666
BsmFI	GGGAC	2 cut(s)	270, 276
BsmI	GAATGC	2 cut(s)	342, 391
BsnI	GGCC	3 cut(s)	99, 219, 593
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1286I	GDGCHC	2 cut(s)	863, 1083
Bsp13I	TCCGGA	1 cut(s)	664
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	41, 366, 985
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	1 cut(s)	941
BspANI	GGCC	3 cut(s)	99, 219, 593
BspDI	ATCGAT	1 cut(s)	1034
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	1006
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	36, 980
BspT104I	TTCGAA	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	191, 801
BssECI	CCNNGG	1 cut(s)	936
BssMI	GATC	3 cut(s)	41, 366, 985
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	856
BssT1I	CCWWGG	1 cut(s)	936
Bst2BI	CACGAG	1 cut(s)	856
Bst2UI	CCWGG	2 cut(s)	101, 1102
Bst4CI	ACNGT	3 cut(s)	653, 760, 1090
Bst6I	CTCTTC	2 cut(s)	348, 626
BstACI	GRCGYC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	163, 167, 391, 538
BstDEI	CTNAG	2 cut(s)	570, 782
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	1 cut(s)	847
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	475, 910
BstKTI	GATC	3 cut(s)	44, 369, 988
BstMAI	GTCTC	2 cut(s)	232, 666
BstMBI	GATC	3 cut(s)	41, 366, 985
BstMCI	CGRYCG	1 cut(s)	1055
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	2 cut(s)	101, 1102
BstSCI	CCNGG	2 cut(s)	99, 1100
BstSLI	GKGCMC	2 cut(s)	863, 1083
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	124, 932
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	3 cut(s)	99, 219, 593
BsuTUI	ATCGAT	1 cut(s)	1034
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	756
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	4 cut(s)	163, 167, 391, 538
CfoI	GCGC	2 cut(s)	475, 910
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	1034
CseI	GACGC	3 cut(s)	407, 834, 1017
Csp6I	GTAC	2 cut(s)	68, 376
CviAII	CATG	6 cut(s)	562, 676, 937, 955, 973, 1060
CviQI	GTAC	2 cut(s)	68, 376
DdeI	CTNAG	2 cut(s)	570, 782
DpnI	GATC	3 cut(s)	43, 368, 987
DpnII	GATC	3 cut(s)	41, 366, 985
EaeI	YGGCCR	2 cut(s)	217, 591
Eam1104I	CTCTTC	2 cut(s)	348, 626
EarI	CTCTTC	2 cut(s)	348, 626
EciI	GGCGGA	1 cut(s)	956
Eco130I	CCWWGG	1 cut(s)	936
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	99, 1100
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	6 cut(s)	565, 679, 940, 958, 976, 1063
FaqI	GGGAC	2 cut(s)	270, 276
FatI	CATG	6 cut(s)	561, 675, 936, 954, 972, 1059
Fnu4HI	GCNGC	2 cut(s)	138, 921
FokI	GGATG	1 cut(s)	854
Fsp4HI	GCNGC	2 cut(s)	138, 921
FspBI	CTAG	5 cut(s)	83, 242, 266, 504, 537
FspI	TGCGCA	2 cut(s)	474, 909
GlaI	GCGC	2 cut(s)	474, 909
GluI	GCNGC	2 cut(s)	138, 921
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	3 cut(s)	99, 219, 593
HapII	CCGG	2 cut(s)	665, 1055
HgaI	GACGC	3 cut(s)	407, 834, 1017
HhaI	GCGC	2 cut(s)	475, 910
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	6 cut(s)	565, 679, 940, 958, 976, 1063
Hin6I	GCGC	2 cut(s)	473, 908
HinP1I	GCGC	2 cut(s)	473, 908
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	9 cut(s)	57, 328, 361, 413, 565, 614, 854, 895, 968
HpaII	CCGG	2 cut(s)	665, 1055
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	4 cut(s)	70, 196, 454, 709
Hpy188I	TCNGA	9 cut(s)	111, 173, 327, 366, 580, 694, 703, 719, 990
Hpy188III	TCNNGA	7 cut(s)	126, 255, 277, 504, 665, 830, 1014
Hpy8I	GTNNAC	4 cut(s)	70, 196, 454, 709
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	2 cut(s)	412, 458
HpyCH4III	ACNGT	3 cut(s)	653, 760, 1090
HpyCH4V	TGCA	6 cut(s)	4, 140, 342, 389, 920, 1001
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	2 cut(s)	570, 782
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	6 cut(s)	565, 679, 940, 958, 976, 1063
HspAI	GCGC	2 cut(s)	473, 908
Kpn2I	TCCGGA	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	41, 366, 985
Lsp1109I	GCAGC	2 cut(s)	124, 932
LweI	GCATC	2 cut(s)	832, 1026
MaeI	CTAG	5 cut(s)	83, 242, 266, 504, 537
MaeIII	GTNAC	2 cut(s)	207, 821
MalI	GATC	3 cut(s)	43, 368, 987
MboI	GATC	3 cut(s)	41, 366, 985
MboII	GAAGA	6 cut(s)	281, 365, 370, 482, 643, 878
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	863, 1083
MlsI	TGGCCA	2 cut(s)	219, 593
MluCI	AATT	5 cut(s)	48, 148, 250, 272, 597
MluI	ACGCGT	1 cut(s)	448
MluNI	TGGCCA	2 cut(s)	219, 593
MlyI	GAGTC	2 cut(s)	848, 904
MnlI	CCTC	3 cut(s)	169, 797, 1041
Mox20I	TGGCCA	2 cut(s)	219, 593
MroI	TCCGGA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	2 cut(s)	219, 593
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	1088
Msp20I	TGGCCA	2 cut(s)	219, 593
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	2 cut(s)	665, 1055
MspR9I	CCNGG	2 cut(s)	101, 1102
Mva1269I	GAATGC	2 cut(s)	342, 391
MvaI	CCWGG	2 cut(s)	101, 1102
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	907
NcoI	CCATGG	1 cut(s)	936
NdeII	GATC	3 cut(s)	41, 366, 985
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	6 cut(s)	565, 679, 940, 958, 976, 1063
NmuCI	GTSAC	1 cut(s)	821
NsbI	TGCGCA	2 cut(s)	474, 909
NspV	TTCGAA	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	854
PctI	GAATGC	2 cut(s)	342, 391
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	7 cut(s)	57, 328, 361, 413, 565, 614, 968
PkrI	GCNGC	2 cut(s)	139, 922
PleI	GAGTC	2 cut(s)	848, 903
PpsI	GAGTC	2 cut(s)	848, 903
Psp6I	CCWGG	2 cut(s)	99, 1100
PspGI	CCWGG	2 cut(s)	99, 1100
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	69, 377
RsaNI	GTAC	2 cut(s)	68, 376
RseI	CAYNNNNRTG	1 cut(s)	1088
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	138, 921
Sau3AI	GATC	3 cut(s)	41, 366, 985
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	848, 904
ScrFI	CCNGG	2 cut(s)	101, 1102
SduI	GDGCHC	2 cut(s)	863, 1083
SfaNI	GCATC	2 cut(s)	832, 1026
SfuI	TTCGAA	1 cut(s)	603
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	1088
SmlI	CTYRAG	1 cut(s)	828
SmoI	CTYRAG	1 cut(s)	828
Sse9I	AATT	5 cut(s)	48, 148, 250, 272, 597
SsiI	CCGC	1 cut(s)	941
SspMI	CTAG	5 cut(s)	83, 242, 266, 504, 537
StyD4I	CCNGG	2 cut(s)	99, 1100
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	3 cut(s)	653, 760, 1090
TaqI	TCGA	5 cut(s)	411, 462, 603, 1013, 1034
TasI	AATT	5 cut(s)	48, 148, 250, 272, 597
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	7 cut(s)	57, 328, 361, 413, 565, 614, 968
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	137, 920
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	5 cut(s)	545, 578, 692, 759, 878
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	3 cut(s)	250, 272, 597
XbaI	TCTAGA	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1090
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	5 cut(s)	83, 242, 266, 504, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.