Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015016.1

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2247

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015016.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 908 bp

atgttcagtttttcagaagtagtagctgcaacagataacttctcgtctgccagcaagctaggacagggtgggtttggacctgtttacaaggtaggagtaaagagactcgcgagaagttcaggacaaggactagaagaattcatgaatgagattacacttatagctgagcttcaacatagtaatcttgttaggctattaggttgttgcattcaaggagaagaaaagattctgatttacgaatttatggcaaataagagcttggatgccttcctatttgactccactagaaggaagcaattggactggcaaacacgggtaaacatcattgaaggaattgcacaaggacttctctatcttcataagcattctagagttagagtcatacacagagatctgaaagctagtaacattctgcttgatgaaaatatgaaccctaagatctcagactttggaatggccagaattttcggacagaatgaatctatggcaaatacagttagagttgtcggaacatacggttatatgtctccagagtatgccatgaggggcattttctctgaaaagtctgatgtttacagttttggtgttctactgttggagattataagtggcaaaaaaaacactacttttctttcatctagtggtctctgccttatcgaacttgcctgggaattgtggaaacaaggccaaaccctggagataaaggacacatcacttgactgtggttccaacgaggaagttttaaaatttattcaggttggtctcttatgtgttcaagagtatgcagaagatagagctactatgtcagaagtaatatcaatgcttacaagtgatgtcacacctttgtctgatccaaagcaacctgcatacactatttcaagaagtgaagcagctgggtcaacgcgtac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

303

Amino Acids

33.75

Weight (kDa)

5.55

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
Acc36I	ACCTGC	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccII	CGCG	2 cut(s)	110, 904
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	4 cut(s)	137, 239, 462, 746
AfaI	GTAC	1 cut(s)	907
AfiI	CCNNNNNNNGG	2 cut(s)	288, 694
AflIII	ACRYGT	1 cut(s)	902
AgsI	TTSAA	5 cut(s)	173, 212, 329, 776, 879
AjnI	CCWGG	2 cut(s)	665, 693
AluBI	AGCT	8 cut(s)	26, 58, 164, 169, 258, 401, 797, 893
AluI	AGCT	8 cut(s)	26, 58, 164, 169, 258, 401, 797, 893
Alw26I	GTCTC	4 cut(s)	97, 531, 650, 767
AlwI	GGATC	1 cut(s)	845
AoxI	GGCC	2 cut(s)	456, 685
ApeKI	GCWGC	2 cut(s)	26, 890
ApoI	RAATTY	4 cut(s)	137, 239, 462, 746
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	13, 902
BciT130I	CCWGG	2 cut(s)	667, 695
BcoDI	GTCTC	4 cut(s)	97, 531, 650, 767
BfaI	CTAG	6 cut(s)	59, 131, 285, 369, 402, 639
BfuAI	ACCTGC	1 cut(s)	871
BglII	AGATCT	2 cut(s)	391, 438
BisI	GCNGC	2 cut(s)	27, 891
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	28, 892
Bme1390I	CCNGG	2 cut(s)	667, 695
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	2 cut(s)	667, 695
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	2 cut(s)	513, 716
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaI	GGTCTC	2 cut(s)	650, 767
BsaJI	CCNNGG	2 cut(s)	666, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 694
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	667, 695
BseDI	CCNNGG	2 cut(s)	666, 693
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	288, 694
BseMII	CTCAG	2 cut(s)	156, 456
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	13, 902
BseYI	CCCAGC	1 cut(s)	893
Bsh1236I	CGCG	2 cut(s)	110, 904
BshFI	GGCC	2 cut(s)	458, 687
BslI	CCNNNNNNNGG	2 cut(s)	288, 694
BsmAI	GTCTC	4 cut(s)	97, 531, 650, 767
BsmI	GAATGC	2 cut(s)	207, 364
BsnI	GGCC	2 cut(s)	458, 687
Bso31I	GGTCTC	2 cut(s)	650, 767
Bsp143I	GATC	3 cut(s)	391, 438, 850
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp68I	TCGCGA	1 cut(s)	110
BspANI	GGCC	2 cut(s)	458, 687
BspCNI	CTCAG	2 cut(s)	157, 455
BspFNI	CGCG	2 cut(s)	110, 904
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	871
BspPI	GGATC	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	650, 767
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	666, 693
BssMI	GATC	3 cut(s)	391, 438, 850
Bst2UI	CCWGG	2 cut(s)	667, 695
Bst4CI	ACNGT	5 cut(s)	496, 518, 578, 594, 722
BstC8I	GCNNGC	2 cut(s)	52, 56
BstDEI	CTNAG	3 cut(s)	165, 435, 442
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	110, 904
BstKTI	GATC	3 cut(s)	394, 441, 853
BstMAI	GTCTC	4 cut(s)	97, 531, 650, 767
BstMBI	GATC	3 cut(s)	391, 438, 850
BstNI	CCWGG	2 cut(s)	667, 695
BstSCI	CCNGG	2 cut(s)	665, 693
BstUI	CGCG	2 cut(s)	110, 904
BstV1I	GCAGC	2 cut(s)	13, 902
BstX2I	RGATCY	2 cut(s)	391, 438
BstYI	RGATCY	2 cut(s)	391, 438
BsuRI	GGCC	2 cut(s)	458, 687
BtsCI	GGATG	1 cut(s)	268
BtuMI	TCGCGA	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	871
Cac8I	GCNNGC	2 cut(s)	52, 56
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	906
CviAII	CATG	2 cut(s)	142, 541
CviQI	GTAC	1 cut(s)	906
DdeI	CTNAG	3 cut(s)	165, 435, 442
DpnI	GATC	3 cut(s)	393, 440, 852
DpnII	GATC	3 cut(s)	391, 438, 850
DraI	TTTAAA	1 cut(s)	744
EaeI	YGGCCR	1 cut(s)	456
Eco31I	GGTCTC	2 cut(s)	650, 767
Eco47I	GGWCC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	665, 693
FaeI	CATG	2 cut(s)	145, 544
FatI	CATG	2 cut(s)	141, 540
Fnu4HI	GCNGC	2 cut(s)	27, 891
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	27, 891
FspBI	CTAG	6 cut(s)	59, 131, 285, 369, 402, 639
GluI	GCNGC	2 cut(s)	27, 891
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	2 cut(s)	513, 716
HaeIII	GGCC	2 cut(s)	458, 687
Hin1II	CATG	2 cut(s)	145, 544
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	5 cut(s)	105, 226, 278, 378, 479
Hpy166II	GTNNAC	4 cut(s)	85, 319, 574, 900
Hpy188III	TCNNGA	7 cut(s)	109, 120, 142, 369, 530, 776, 879
Hpy8I	GTNNAC	4 cut(s)	85, 319, 574, 900
HpyAV	CCTTC	3 cut(s)	277, 282, 323
HpyCH4III	ACNGT	5 cut(s)	496, 518, 578, 594, 722
HpyCH4V	TGCA	5 cut(s)	29, 207, 338, 785, 866
HpyF3I	CTNAG	3 cut(s)	165, 435, 442
Hsp92II	CATG	2 cut(s)	145, 544
Kzo9I	GATC	3 cut(s)	391, 438, 850
Lsp1109I	GCAGC	2 cut(s)	13, 902
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	6 cut(s)	59, 131, 285, 369, 402, 639
MaeIII	GTNAC	2 cut(s)	404, 835
MalI	GATC	3 cut(s)	393, 440, 852
MboI	GATC	3 cut(s)	391, 438, 850
MboII	GAAGA	4 cut(s)	146, 230, 347, 800
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	2 cut(s)	391, 438
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	7 cut(s)	137, 239, 296, 333, 462, 671, 746
MluI	ACGCGT	1 cut(s)	902
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	3 cut(s)	99, 272, 387
MmeI	TCCRAC	3 cut(s)	487, 576, 753
MnlI	CCTC	2 cut(s)	537, 727
Mox20I	TGGCCA	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	1 cut(s)	743
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	893
MspR9I	CCNGG	2 cut(s)	667, 695
MunI	CAATTG	1 cut(s)	296
Mva1269I	GAATGC	2 cut(s)	207, 364
MvaI	CCWGG	2 cut(s)	667, 695
MvnI	CGCG	2 cut(s)	110, 904
NdeII	GATC	3 cut(s)	391, 438, 850
NlaIII	CATG	2 cut(s)	145, 544
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	835
NruI	TCGCGA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	2 cut(s)	207, 364
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	226, 479
PflMI	CCANNNNNTGG	1 cut(s)	694
PkrI	GCNGC	2 cut(s)	28, 892
PleI	GAGTC	3 cut(s)	99, 272, 386
PpsI	GAGTC	3 cut(s)	99, 272, 386
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	665, 693
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	2 cut(s)	665, 693
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	391, 438
PvuII	CAGCTG	1 cut(s)	893
RruI	TCGCGA	1 cut(s)	110
RsaI	GTAC	1 cut(s)	907
RsaNI	GTAC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	2 cut(s)	27, 891
Sau3AI	GATC	3 cut(s)	391, 438, 850
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	3 cut(s)	99, 272, 387
ScrFI	CCNGG	2 cut(s)	667, 695
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	7 cut(s)	137, 239, 296, 333, 462, 671, 746
SspMI	CTAG	6 cut(s)	59, 131, 285, 369, 402, 639
StyD4I	CCNGG	2 cut(s)	665, 693
TaaI	ACNGT	5 cut(s)	496, 518, 578, 594, 722
TaqI	TCGA	1 cut(s)	657
TasI	AATT	7 cut(s)	137, 239, 296, 333, 462, 671, 746
TfiI	GAWTC	2 cut(s)	226, 479
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	2 cut(s)	26, 890
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	7 cut(s)	130, 158, 347, 435, 443, 492, 624
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	4 cut(s)	137, 239, 462, 746
XbaI	TCTAGA	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	6 cut(s)	59, 131, 285, 369, 402, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.