Rh2AG053900

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001889
Physical Location & Seq
Reverse (-)
4278512 .. 4283105
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG053900.1

Sequence Viewer

Length: 1485 bp
ATGGGTTTCTGCCATGTGATCATTTGGAATCTTGTGACAATAAAATCTAACCTGGTATGGTCATCAGTTCGATCTCAGGAACTTCTAGCCTTAACACTAACTTTGTGGTTGGCTCCAGATGGAAATTCTACAGGAGGACGCAAACAAAGATATTCAAGAAGACCAGTAAGGAAAAAATGGTGGATATTCACAATCATAGGCATTACACTTGCTGTGGCGGTATTATGTTACCTGTGGTACATACATAAAAGAAAACATGGAGTCATGGAACACACTGAGACACTGATATCTACAATCAAGCAAGGCCAACAGCTGAGTGACCTGAGTTCTGATCATCTGGTTTCGGATAACGGCTTCTACAAGTTGGGATTCTTCAGTCCTGGTTCTACTAGTAACCTTGGTGCTACCAGTAATCGTTTCTTGGGAATATGGTACAGCAAACTACCAAATCATCCTGATGCAATCTGGGTGGGGAACCCAGAATCCCCGATCAACGATTCATCTGCTGTGTTTAAGTTGGATAGTGATGGAAAGTTGAAGATTGTATATGATGGAGGCCTAATATATGTGTCAGATGTCAATCAAACAGTTTCTGGTAATGTCACTCTCTCTTTACTTGGTACTGGAAATCTTGTCTTGAGAGAAGTAGATTCAAAGGGAGCAGCTGGAAATGTTTTATGGGAAAGTTTTAGCAATGCATCAAATACATTGTTGCCTGGAATGAAGCTGGGAAGGAACCTCAGGACCGGAGAGAATTGGACTATTTCTTCATGGTTTAGTGATCAGTCCCCTGTACCAGGTGCTTTCAAGCTCGGTGTTGATCCCAGTGGCACTGACCAATTGATTGTCTGGTGGCGAGAGGAGGTATACTGGAGCAGTGGAGTCTGGGAAGATGGAAATTTTCAAGATGCCCCTGAATTGACGAAAAGGGATGATTTGTTTTGGTTCACTTTTGTTTCAAACAGTGAGCAAAAGTACTTCTCTTATTATCTCAAGAACAATCTCACTCTTGATGTTCCAGAAAACAATACTACTATATCAAGGTGGGAACTGAATTCTTGGGGGCAAATTTTGCAGTCAATTCTATCTGTAAATGGTAGTATATGGGAAACCACAACTATCAGTCCTTGCACCTTCAACCCTAAGTATCCGGATGCGGTGTGCATAGAGGAGAAGACCTCCCAATGCAGGAATGGCTCTGAGCTATTTGTTCCAACAAACGGTTATTTGAATGGAACTGAATTGACATACAGTAATAACAGTACTAACTTGGTTCTCAATGATTGTCACGCTACTTGCTGGAGCGATTGCACCTGTATCGGCTATGAAACAATATACACGAATGGGTCTGGGTGTCTGTTTTTGAGGGAAGGAGCAAAGTTTGTTCAGAACAATTACTATGGAGTTACTTATCTCTTGACAATACCAACCAAAGGTACACCTGCCCCAACATATACCTATGATTTTTGCTCTTTGCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

494

Amino Acids

55.4

Weight (kDa)

5.72

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 155 - 258 1.9e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1450
Acc36I ACCTGC 1 cut(s) 1450
AccI GTMKAC 1 cut(s) 867
AccIII TCCGGA 1 cut(s) 1150
AciI CCGC 2 cut(s) 218, 1157
AclWI GGATC 1 cut(s) 815
AcsI RAATTY 4 cut(s) 124, 898, 1054, 1068
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 7 cut(s) 239, 434, 622, 795, 977, 1264, 1438
AfiI CCNNNNNNNGG 4 cut(s) 797, 1188, 1220, 1433
AgsI TTSAA 8 cut(s) 156, 538, 654, 808, 905, 960, 1138, 1231
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 4 cut(s) 51, 379, 715, 796
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 5 cut(s) 313, 665, 727, 811, 1204
AluI AGCT 5 cut(s) 313, 665, 727, 811, 1204
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 815
AlwNI CAGNNNCTG 1 cut(s) 593
Aor13HI TCCGGA 1 cut(s) 1150
AoxI GGCC 2 cut(s) 304, 556
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 4 cut(s) 124, 898, 1054, 1068
AspS9I GGNCC 1 cut(s) 744
AvaII GGWCC 1 cut(s) 744
AxyI CCTNAGG 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 166, 1181
BbvI GCAGC 1 cut(s) 674
BccI CCATC 4 cut(s) 113, 521, 545, 887
BceAI ACGGC 1 cut(s) 367
BcgI CGANNNNNNTGC 4 cut(s) 485, 519, 1300, 1334
BciT130I CCWGG 4 cut(s) 53, 381, 717, 798
BciVI GTATCC 1 cut(s) 1158
BclI TGATCA 3 cut(s) 18, 331, 781
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 2 cut(s) 86, 390
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 1450
BfuI GTATCC 1 cut(s) 1158
BisI GCNGC 1 cut(s) 663
BlsI GCNGC 1 cut(s) 664
BmcAI AGTACT 2 cut(s) 977, 1264
Bme1390I CCNGG 4 cut(s) 53, 381, 717, 798
Bme18I GGWCC 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 3 cut(s) 114, 476, 737
BmrFI CCNGG 4 cut(s) 53, 381, 717, 798
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 4 cut(s) 448, 707, 898, 1144
BmuI ACTGGG 1 cut(s) 819
BpiI GAAGAC 2 cut(s) 166, 1181
BplI GAGNNNNNCTC 2 cut(s) 1163, 1195
BpmI CTGGAG 3 cut(s) 99, 892, 1321
BpuEI CTTGAG 2 cut(s) 658, 977
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 2 cut(s) 746, 1150
Bsc4I CCNNNNNNNGG 4 cut(s) 797, 1188, 1220, 1433
Bse1I ACTGG 5 cut(s) 164, 408, 628, 825, 875
Bse21I CCTNAGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 579
BseAI TCCGGA 1 cut(s) 1150
BseBI CCWGG 4 cut(s) 53, 381, 717, 798
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 451, 937, 1159
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 797, 1188, 1220, 1433
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 6 cut(s) 89, 267, 305, 314, 754, 1191
BseNI ACTGG 5 cut(s) 164, 408, 628, 825, 875
BseRI GAGGAG 2 cut(s) 875, 1184
BseXI GCAGC 1 cut(s) 674
BseYI CCCAGC 1 cut(s) 727
BshFI GGCC 2 cut(s) 306, 558
BsiSI CCGG 2 cut(s) 747, 1151
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 4 cut(s) 797, 1188, 1220, 1433
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 2 cut(s) 306, 558
Bsp13I TCCGGA 1 cut(s) 1150
Bsp143I GATC 6 cut(s) 18, 71, 331, 489, 781, 820
BspACI CCGC 2 cut(s) 218, 1157
BspANI GGCC 2 cut(s) 306, 558
BspCNI CTCAG 6 cut(s) 88, 268, 306, 315, 753, 1192
BspEI TCCGGA 1 cut(s) 1150
BspLI GGNNCC 3 cut(s) 114, 476, 737
BspMI ACCTGC 1 cut(s) 1450
BspPI GGATC 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 700
BsrI ACTGG 5 cut(s) 164, 408, 628, 825, 875
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 6 cut(s) 18, 71, 331, 489, 781, 820
BssNAI GTATAC 1 cut(s) 868
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 868
Bst2UI CCWGG 4 cut(s) 53, 381, 717, 798
Bst4CI ACNGT 5 cut(s) 589, 965, 1223, 1253, 1262
BstAPI GCANNNNNTGC 1 cut(s) 1072
BstDEI CTNAG 7 cut(s) 75, 276, 314, 323, 740, 1143, 1200
BstENI CCTNNNNNAGG 1 cut(s) 795
BstF5I GGATG 3 cut(s) 451, 937, 1159
BstKTI GATC 6 cut(s) 21, 74, 334, 492, 784, 823
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 6 cut(s) 18, 71, 331, 489, 781, 820
BstMWI GCNNNNNNNGC 2 cut(s) 1072, 1194
BstNI CCWGG 4 cut(s) 53, 381, 717, 798
BstSCI CCNGG 4 cut(s) 51, 379, 715, 796
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 2 cut(s) 166, 1181
BstZ17I GTATAC 1 cut(s) 868
Bsu36I CCTNAGG 1 cut(s) 740
BsuI GTATCC 1 cut(s) 1158
BsuRI GGCC 2 cut(s) 306, 558
BtsCI GGATG 3 cut(s) 451, 937, 1159
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 6 cut(s) 273, 281, 831, 832, 883, 970
BveI ACCTGC 1 cut(s) 1450
CaiI CAGNNNCTG 1 cut(s) 593
Cfr13I GGNCC 1 cut(s) 744
CseI GACGC 1 cut(s) 147
CsiI ACCWGGT 2 cut(s) 51, 796
Csp6I GTAC 7 cut(s) 238, 433, 621, 794, 976, 1263, 1437
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 4 cut(s) 14, 257, 265, 771
CviQI GTAC 7 cut(s) 238, 433, 621, 794, 976, 1263, 1437
DdeI CTNAG 7 cut(s) 75, 276, 314, 323, 740, 1143, 1200
DpnI GATC 6 cut(s) 20, 73, 333, 491, 783, 822
DpnII GATC 6 cut(s) 18, 71, 331, 489, 781, 820
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 558
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 744
Eco57I CTGAAG 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 795
EcoRI GAATTC 1 cut(s) 1054
EcoRII CCWGG 4 cut(s) 51, 379, 715, 796
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 4 cut(s) 17, 260, 268, 774
FaqI GGGAC 1 cut(s) 772
FatI CATG 4 cut(s) 13, 256, 264, 770
FbaI TGATCA 3 cut(s) 18, 331, 781
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 1 cut(s) 663
FokI GGATG 3 cut(s) 438, 944, 1166
Fsp4HI GCNGC 1 cut(s) 663
FspBI CTAG 2 cut(s) 86, 390
GluI GCNGC 1 cut(s) 663
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 3 cut(s) 99, 892, 1321
HaeIII GGCC 2 cut(s) 306, 558
HapII CCGG 2 cut(s) 747, 1151
HgaI GACGC 1 cut(s) 147
Hin1II CATG 4 cut(s) 17, 260, 268, 774
HinfI GANTC 7 cut(s) 28, 261, 369, 482, 497, 650, 882
HpaII CCGG 2 cut(s) 747, 1151
Hpy166II GTNNAC 3 cut(s) 868, 948, 1439
Hpy188I TCNGA 5 cut(s) 331, 346, 574, 1201, 1389
Hpy8I GTNNAC 3 cut(s) 868, 948, 1439
HpyAV CCTTC 3 cut(s) 726, 1144, 1364
HpyCH4III ACNGT 5 cut(s) 589, 965, 1223, 1253, 1262
HpyCH4V TGCA 7 cut(s) 461, 698, 1075, 1131, 1164, 1188, 1311
HpyF10VI GCNNNNNNNGC 2 cut(s) 1072, 1194
HpyF3I CTNAG 7 cut(s) 75, 276, 314, 323, 740, 1143, 1200
Hsp92II CATG 4 cut(s) 17, 260, 268, 774
Kpn2I TCCGGA 1 cut(s) 1150
Ksp22I TGATCA 3 cut(s) 18, 331, 781
Kzo9I GATC 6 cut(s) 18, 71, 331, 489, 781, 820
LmnI GCTCC 5 cut(s) 118, 659, 873, 1302, 1373
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 4 cut(s) 448, 707, 898, 1144
MabI ACCWGGT 2 cut(s) 51, 796
MaeI CTAG 2 cut(s) 86, 390
MaeIII GTNAC 7 cut(s) 34, 227, 317, 392, 601, 1286, 1405
MalI GATC 6 cut(s) 20, 73, 333, 491, 783, 822
MboI GATC 6 cut(s) 18, 71, 331, 489, 781, 820
MboII GAAGA 6 cut(s) 171, 364, 550, 759, 902, 1186
MfeI CAATTG 1 cut(s) 839
MlyI GAGTC 2 cut(s) 270, 891
MmeI TCCRAC 2 cut(s) 498, 1238
MnlI CCTC 8 cut(s) 128, 548, 749, 853, 856, 1162, 1189, 1359
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 1150
MseI TTAA 2 cut(s) 92, 513
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 313, 665
MspI CCGG 2 cut(s) 747, 1151
MspR9I CCNGG 4 cut(s) 53, 381, 717, 798
MunI CAATTG 1 cut(s) 839
MvaI CCWGG 4 cut(s) 53, 381, 717, 798
MwoI GCNNNNNNNGC 2 cut(s) 1072, 1194
NdeII GATC 6 cut(s) 18, 71, 331, 489, 781, 820
NlaIII CATG 4 cut(s) 17, 260, 268, 774
NlaIV GGNNCC 3 cut(s) 114, 476, 737
NmuCI GTSAC 4 cut(s) 34, 317, 601, 1286
NsiI ATGCAT 1 cut(s) 700
PaqCI CACCTGC 1 cut(s) 1450
PceI AGGCCT 1 cut(s) 558
PfeI GAWTC 5 cut(s) 28, 369, 482, 497, 650
PkrI GCNGC 1 cut(s) 664
PleI GAGTC 2 cut(s) 269, 890
PpsI GAGTC 2 cut(s) 269, 890
Psp6I CCWGG 4 cut(s) 51, 379, 715, 796
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 4 cut(s) 51, 379, 715, 796
PspN4I GGNNCC 3 cut(s) 114, 476, 737
PspPI GGNCC 1 cut(s) 744
PstNI CAGNNNCTG 1 cut(s) 593
PvuII CAGCTG 2 cut(s) 313, 665
RsaI GTAC 7 cut(s) 239, 434, 622, 795, 977, 1264, 1438
RsaNI GTAC 7 cut(s) 238, 433, 621, 794, 976, 1263, 1437
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 2 cut(s) 92, 513
SatI GCNGC 1 cut(s) 663
Sau3AI GATC 6 cut(s) 18, 71, 331, 489, 781, 820
Sau96I GGNCC 1 cut(s) 744
ScaI AGTACT 2 cut(s) 977, 1264
SchI GAGTC 2 cut(s) 270, 891
ScrFI CCNGG 4 cut(s) 53, 381, 717, 798
SexAI ACCWGGT 2 cut(s) 51, 796
SfaNI GCATC 4 cut(s) 448, 707, 898, 1144
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 637, 992
SmoI CTYRAG 2 cut(s) 637, 992
SpeI ACTAGT 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 2 cut(s) 218, 1157
SspMI CTAG 2 cut(s) 86, 390
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 4 cut(s) 51, 379, 715, 796
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 5 cut(s) 589, 965, 1223, 1253, 1262
TaqI TCGA 1 cut(s) 70
TatI WGTACW 2 cut(s) 975, 1262
TfiI GAWTC 5 cut(s) 28, 369, 482, 497, 650
Tru1I TTAA 2 cut(s) 92, 513
Tru9I TTAA 2 cut(s) 92, 513
TscAI CASTG 6 cut(s) 280, 288, 832, 838, 883, 970
TseFI GTSAC 4 cut(s) 34, 317, 601, 1286
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 4 cut(s) 34, 317, 601, 1286
TspDTI ATGAA 4 cut(s) 489, 737, 759, 1341
TspRI CASTG 6 cut(s) 280, 288, 832, 838, 883, 970
VpaK11BI GGWCC 1 cut(s) 744
XagI CCTNNNNNAGG 1 cut(s) 795
XapI RAATTY 4 cut(s) 124, 898, 1054, 1068
XcmI CCANNNNNNNNNTGG 1 cut(s) 1190
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 2 cut(s) 86, 390
ZrmI AGTACT 2 cut(s) 977, 1264
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.