Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Forward (+)

20234191 .. 20234966

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAATCCGAAGATATCAGATTTTGGAATGGCCAGAATTTTCGGACAGAACAAGTCCATAGCAAATACAAGAAGAGTTCGTTATATGTCTCCAGAGTATGCCATGAAAGACATTTTCTCCAAGAAGTCCGATGTTTACAGCTTCGGAGTTTTCCTGCTGGAGTTTTTGAGTGGTAAAAAGAACACCGCCTGGGAATTGTGGAAACAAGGTGACAGTGTAGAACTAAGGGACAACTCAATGGCCTCGTGCCCAAAAGAAGAACATGCGGCAGATAGACCTACCATTTCAGAAGTCATATCCATGCTTACGAGTGATATCATGTTTTTGCCTGATCCAAAACAACCTGCATATTATTTTTCGAGAAATGAAGTTTGGCCATCACCACCATATGGAAGGCTTGATATGGGTTCAGTAAATTGTGTATCTATGACTGTAGTGGAAGCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

7.72

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	2 cut(s)	186, 266
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	30, 374
AcsI	RAATTY	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	2 cut(s)	141, 443
AluI	AGCT	2 cut(s)	141, 443
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	3 cut(s)	30, 240, 374
ApoI	RAATTY	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	221, 372
BaeGI	GKGCMC	1 cut(s)	251
BalI	TGGCCA	2 cut(s)	32, 376
BauI	CACGAG	1 cut(s)	244
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BpmI	CTGGAG	2 cut(s)	75, 179
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	251
BshFI	GGCC	3 cut(s)	32, 242, 376
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	32, 242, 376
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	186, 266
BspANI	GGCC	3 cut(s)	32, 242, 376
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	331
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	215, 433
Bst6I	CTCTTC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	32, 242, 376
BtsIMutI	CAGTG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	352
CviAII	CATG	4 cut(s)	103, 263, 301, 319
CviJI	RGCY	6 cut(s)	32, 141, 242, 376, 397, 443
CviKI_1	RGCY	6 cut(s)	32, 141, 242, 376, 397, 443
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	30, 374
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco32I	GATATC	2 cut(s)	15, 316
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	2 cut(s)	15, 316
FaeI	CATG	4 cut(s)	106, 266, 304, 322
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	102, 262, 300, 318
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	75, 179
HaeIII	GGCC	3 cut(s)	32, 242, 376
Hin1II	CATG	4 cut(s)	106, 266, 304, 322
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	221, 372
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	9, 19, 44, 130, 146, 289
Hpy188III	TCNNGA	2 cut(s)	92, 360
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	2 cut(s)	215, 433
HpyCH4V	TGCA	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	4 cut(s)	106, 266, 304, 322
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	8 cut(s)	46, 105, 143, 167, 175, 202, 342, 357
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	22, 84, 269
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	2 cut(s)	32, 376
MluCI	AATT	3 cut(s)	36, 194, 415
MluNI	TGGCCA	2 cut(s)	32, 376
MnlI	CCTC	1 cut(s)	253
Mox20I	TGGCCA	2 cut(s)	32, 376
MscI	TGGCCA	2 cut(s)	32, 376
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	2 cut(s)	32, 376
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	106, 266, 304, 322
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	5 cut(s)	143, 211, 280, 346, 445
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	36, 194, 415
SsiI	CCGC	2 cut(s)	186, 266
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	215, 433
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	36, 194, 415
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	17, 119, 381
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.