Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Reverse (-)

3545729 .. 3546815

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAATTGGGCATCAATGTCGAGGCTGGACAGAATTGGACTATTTCTTCCTGGTTCAGCGATCAAATCCCTGCACCAGGTGTTTTTAGGCTTGGCGTTGATCCTGGTAGCACCAACCAATTGATCATCTGGAGGCGAGATGAAGTATACTGGAGCAGTGGGGTCTGGGAAAATGGAACCTTTCAAAATGCTCCTGAAATGACCAGAAGGGTTGATCTATTTGAGTTCACTTTTGTTTCAAACAAGGAAGATAAGTACTTTACTTATACCGTTAAAAACAGGTCTACTGTTTCAAGGTGGGAACTGAATGCTTGGGGCCAAATCATGCAGTCCACTTTAACTCTCAACGGTACTACTTGGGAGAGCACAGAAGCTAGTCCATGCACATTCAACTTGACTAATCCGGGAGCCCTGTGCATAGAGGAGAAGCCCTCTGAATGCAGGAATGGCTCGGACGGACTTGTACCAGTAAGAGGCTATTTTGATGGAAACGAAATTTTACATCATGACAACAATACTAAAATGACTATTAGTGATTGCCATGCTACTTGCTGGAGTGACTGCACCTGTATTGGCTACAAAAGTATATATACCAATGGGACTGGGTGTGTATTTATGAGTGGAGAAGCGAAATTTATCCCGAATAGTTACTTTGATGCTACTTATGTCCTTGAGATATGGAATCATAGCAAAGATGGAACACCAGCAGAAGGAAGCAAAACGAGCGATTTAACACGAGATATAAAGAAGAAATGGTGGATATGGTGCATCGTAGGTCTTATACTTATCATGGCAGTGCTATTATGTTGCTTGTACTACATAAAGAAAAGAAAACGAGGACTCATGAAACACACTGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

287

Amino Acids

32.65

Weight (kDa)

6.93

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	51 - 148	2.6e-10	S-locus glycoprotein domain
PAN_2	PF08276	147 - 208	3.8e-06	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	147, 284
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	495, 632
AdeI	CACNNNGTG	1 cut(s)	80
AfaI	GTAC	4 cut(s)	257, 352, 465, 815
AfiI	CCNNNNNNNGG	3 cut(s)	77, 473, 710
AgsI	TTSAA	4 cut(s)	185, 240, 294, 391
AjnI	CCWGG	3 cut(s)	50, 76, 103
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	495, 632
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	368
BccI	CCATC	2 cut(s)	479, 689
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	52, 78, 105
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	1 cut(s)	375
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	4 cut(s)	52, 78, 105, 405
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	178, 317, 409
BmrFI	CCNGG	4 cut(s)	52, 78, 105, 405
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	3 cut(s)	21, 646, 777
BmuI	ACTGGG	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	3 cut(s)	151, 172, 574
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 473, 710
Bse1I	ACTGG	4 cut(s)	155, 467, 607, 859
BseBI	CCWGG	3 cut(s)	52, 78, 105
BseLI	CCNNNNNNNGG	3 cut(s)	77, 473, 710
BseNI	ACTGG	4 cut(s)	155, 467, 607, 859
BseRI	GAGGAG	1 cut(s)	437
BsgI	GTGCAG	2 cut(s)	57, 547
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	77, 473, 710
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	2 cut(s)	313, 443
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	368, 412
Bsp143I	GATC	4 cut(s)	61, 100, 123, 214
BspANI	GGCC	1 cut(s)	318
BspHI	TCATGA	2 cut(s)	505, 843
BspLI	GGNNCC	3 cut(s)	178, 317, 409
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	4 cut(s)	155, 467, 607, 859
BssMI	GATC	4 cut(s)	61, 100, 123, 214
BssNAI	GTATAC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	735
Bst1107I	GTATAC	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	52, 78, 105
Bst4CI	ACNGT	3 cut(s)	271, 289, 350
BstENI	CCTNNNNNAGG	1 cut(s)	75
BstKTI	GATC	4 cut(s)	64, 103, 126, 217
BstMBI	GATC	4 cut(s)	61, 100, 123, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 723
BstNI	CCWGG	3 cut(s)	52, 78, 105
BstSCI	CCNGG	4 cut(s)	50, 76, 103, 403
BstZ17I	GTATAC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	318
BtsI	GCAGTG	2 cut(s)	163, 801
BtsIMutI	CAGTG	3 cut(s)	163, 801, 852
CciI	TCATGA	2 cut(s)	505, 843
Cfr13I	GGNCC	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	256, 351, 464, 814
CviAII	CATG	6 cut(s)	325, 381, 506, 542, 790, 844
CviJI	RGCY	9 cut(s)	26, 91, 318, 374, 410, 430, 450, 477, 576
CviKI_1	RGCY	9 cut(s)	26, 91, 318, 374, 410, 430, 450, 477, 576
CviQI	GTAC	4 cut(s)	256, 351, 464, 814
DpnI	GATC	4 cut(s)	63, 102, 125, 216
DpnII	GATC	4 cut(s)	61, 100, 123, 214
DraIII	CACNNNGTG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	75
EcoRII	CCWGG	3 cut(s)	50, 76, 103
EcoT38I	GRGCYC	1 cut(s)	412
FaeI	CATG	6 cut(s)	328, 384, 509, 545, 793, 847
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	6 cut(s)	324, 380, 505, 541, 789, 843
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	2 cut(s)	147, 284
FriOI	GRGCYC	1 cut(s)	412
FspBI	CTAG	1 cut(s)	375
GsuI	CTGGAG	3 cut(s)	151, 172, 574
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	6 cut(s)	328, 384, 509, 545, 793, 847
HinfI	GANTC	2 cut(s)	682, 840
HpaII	CCGG	1 cut(s)	404
Hpy166II	GTNNAC	4 cut(s)	148, 228, 285, 333
Hpy188I	TCNGA	2 cut(s)	436, 454
Hpy188III	TCNNGA	5 cut(s)	130, 194, 506, 640, 844
Hpy8I	GTNNAC	4 cut(s)	148, 228, 285, 333
HpyAV	CCTTC	2 cut(s)	201, 704
HpyCH4III	ACNGT	3 cut(s)	271, 289, 350
HpyCH4V	TGCA	7 cut(s)	74, 328, 384, 417, 441, 564, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 723
Hsp92II	CATG	6 cut(s)	328, 384, 509, 545, 793, 847
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	61, 100, 123, 214
LmnI	GCTCC	3 cut(s)	153, 196, 407
LweI	GCATC	3 cut(s)	21, 646, 777
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	557, 647
MalI	GATC	4 cut(s)	63, 102, 125, 216
MboI	GATC	4 cut(s)	61, 100, 123, 214
MboII	GAAGA	3 cut(s)	39, 260, 760
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	368, 412
MluCI	AATT	5 cut(s)	5, 34, 119, 495, 632
MlyI	GAGTC	1 cut(s)	834
MnlI	CCTC	6 cut(s)	16, 126, 415, 442, 467, 830
MseI	TTAA	3 cut(s)	273, 338, 731
MslI	CAYNNNNRTG	1 cut(s)	794
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	4 cut(s)	52, 78, 105, 405
MunI	CAATTG	1 cut(s)	119
Mva1269I	GAATGC	2 cut(s)	313, 443
MvaI	CCWGG	3 cut(s)	52, 78, 105
MwoI	GCNNNNNNNGC	2 cut(s)	447, 723
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	4 cut(s)	61, 100, 123, 214
NlaIII	CATG	6 cut(s)	328, 384, 509, 545, 793, 847
NlaIV	GGNNCC	3 cut(s)	178, 317, 409
NmuCI	GTSAC	1 cut(s)	557
PagI	TCATGA	2 cut(s)	505, 843
PctI	GAATGC	2 cut(s)	313, 443
PfeI	GAWTC	1 cut(s)	682
PfoI	TCCNGGA	1 cut(s)	403
PleI	GAGTC	1 cut(s)	834
PpsI	GAGTC	1 cut(s)	834
Psp6I	CCWGG	3 cut(s)	50, 76, 103
PspGI	CCWGG	3 cut(s)	50, 76, 103
PspN4I	GGNNCC	3 cut(s)	178, 317, 409
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	4 cut(s)	257, 352, 465, 815
RsaNI	GTAC	4 cut(s)	256, 351, 464, 814
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	3 cut(s)	273, 338, 731
Sau3AI	GATC	4 cut(s)	61, 100, 123, 214
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	4 cut(s)	52, 78, 105, 405
SduI	GDGCHC	2 cut(s)	368, 412
SetI	ASST	7 cut(s)	82, 182, 284, 299, 376, 569, 778
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	3 cut(s)	21, 646, 777
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	5 cut(s)	5, 34, 119, 495, 632
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	4 cut(s)	50, 76, 103, 403
TaaI	ACNGT	3 cut(s)	271, 289, 350
TaqI	TCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	5, 34, 119, 495, 632
TatI	WGTACW	2 cut(s)	255, 813
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	3 cut(s)	273, 338, 731
Tru9I	TTAA	3 cut(s)	273, 338, 731
TscAI	CASTG	3 cut(s)	163, 801, 859
TseFI	GTSAC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	17, 156, 860
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	163, 801, 859
XagI	CCTNNNNNAGG	1 cut(s)	75
XapI	RAATTY	2 cut(s)	495, 632
XmiI	GTMKAC	2 cut(s)	147, 284
XspI	CTAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.