Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294841.1

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Forward (+)

119 .. 862

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgcactccactctcaacggtactacttgggagagcacagaagctagtccatgcacattcaacttgactaatccgggagccctgtgcatagaggagaagccctctgaatgcaggaatggcttggacggacttgtaccagtaagaggctattttgatggaaacgaaattttacatcatgacaacaatactgaaatgaccattagtgattgccatgctacttgctggagtgactgcgcctgtattggctacaaaagtatatataccaatgggactgggtgtgtgtttatgagtggagaagcgaaatttatcccgaatagttactttgatgctacttatgtccttaacatatggaatcatagcaaagatggaacaccagcagaaggaagcaaaacaagcaatttaacacgagatataaagaaaaaatggtggatatggtgcatcgtaggtcttatatttatcatggcagtgctattatgttgcttgtactacataaagaaaagaaaactaggactcatgaaacacactggtaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

177

Amino Acids

19.86

Weight (kDa)

6.97

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	165, 302
AfaI	GTAC	3 cut(s)	22, 135, 485
AfiI	CCNNNNNNNGG	2 cut(s)	143, 380
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	165, 302
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	149, 359
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	2 cut(s)	45, 506
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	316, 447
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 380
Bse1I	ACTGG	3 cut(s)	137, 277, 529
BseLI	CCNNNNNNNGG	2 cut(s)	143, 380
BseNI	ACTGG	3 cut(s)	137, 277, 529
BseRI	GAGGAG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	143, 380
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	38, 82
BspHI	TCATGA	2 cut(s)	175, 513
BspLI	GGNNCC	1 cut(s)	79
BsrI	ACTGG	3 cut(s)	137, 277, 529
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 393
BstSCI	CCNGG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	471, 522
CciI	TCATGA	2 cut(s)	175, 513
CfoI	GCGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	21, 134, 484
CviAII	CATG	5 cut(s)	51, 176, 212, 460, 514
CviJI	RGCY	6 cut(s)	44, 80, 100, 120, 147, 246
CviKI_1	RGCY	6 cut(s)	44, 80, 100, 120, 147, 246
CviQI	GTAC	3 cut(s)	21, 134, 484
Eco24I	GRGCYC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	5 cut(s)	54, 179, 215, 463, 517
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	5 cut(s)	50, 175, 211, 459, 513
FauNDI	CATATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	82
FspBI	CTAG	2 cut(s)	45, 506
GlaI	GCGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	244
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	54, 179, 215, 463, 517
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	352, 510
HpaII	CCGG	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	176, 310, 514
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	4, 54, 87, 111, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 393
Hsp92II	CATG	5 cut(s)	54, 179, 215, 463, 517
HspAI	GCGC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	87, 95, 97, 150, 208, 250, 258, 387, 510
LweI	GCATC	2 cut(s)	316, 447
MaeI	CTAG	2 cut(s)	45, 506
MaeIII	GTNAC	2 cut(s)	227, 317
MhlI	GDGCHC	2 cut(s)	38, 82
MluCI	AATT	3 cut(s)	165, 302, 397
MlyI	GAGTC	1 cut(s)	504
MnlI	CCTC	3 cut(s)	85, 112, 137
MseI	TTAA	2 cut(s)	342, 401
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	117, 393
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	347
NlaIII	CATG	5 cut(s)	54, 179, 215, 463, 517
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	227
PagI	TCATGA	2 cut(s)	175, 513
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	73
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	3 cut(s)	22, 135, 485
RsaNI	GTAC	3 cut(s)	21, 134, 484
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	342, 401
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	38, 82
SetI	ASST	3 cut(s)	46, 448, 533
SfaNI	GCATC	2 cut(s)	316, 447
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	165, 302, 397
SspMI	CTAG	2 cut(s)	45, 506
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	3 cut(s)	165, 302, 397
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	342, 401
Tru9I	TTAA	2 cut(s)	342, 401
TscAI	CASTG	2 cut(s)	471, 529
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	471, 529
XapI	RAATTY	2 cut(s)	165, 302
XspI	CTAG	2 cut(s)	45, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.