Rorug03G0323600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001889
Physical Location & Seq
Forward (+)
35414014 .. 35414482
469 bp
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UTR
Exon/CDS
Intron
Rorug03G0323600.1

Sequence Viewer

Length: 267 bp
ATGGATAATCAAGTTATGCACAATACTGACGGTTTTGATAAATGGAAAGGATCGATGCTGAAGAAAGGAGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGTAGACTCAGAATTTCTAGTGTTAACATCTGATGGTTTATGGGATTACATAAACAGTTCAGATGCAGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

88

Amino Acids

9.63

Weight (kDa)

4.56

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 18 - 86 2.6e-15 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 80, 261
AluBI AGCT 4 cut(s) 196, 220, 224, 245
AluI AGCT 4 cut(s) 196, 220, 224, 245
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 235
AsuNHI GCTAGC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 134
BfaI CTAG 3 cut(s) 104, 125, 221
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 3 cut(s) 45, 86, 160
BmtI GCTAGC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
BseCI ATCGAT 1 cut(s) 53
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 53
Bsp143I GATC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 1 cut(s) 58
BssMI GATC 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 32, 164
BstC8I GCNNGC 2 cut(s) 222, 237
BstDEI CTNAG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 230, 245, 251
BstV1I GCAGC 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 222, 237
CfoI GCGC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 53
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 196, 220, 224, 245
CviKI_1 RGCY 4 cut(s) 196, 220, 224, 245
DdeI CTNAG 1 cut(s) 115
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 80, 261
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 17, 148, 158, 207, 231
FatI CATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 104, 125, 221
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 66
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 2 cut(s) 113, 190
HpaI GTTAAC 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 112, 132
Hpy188I TCNGA 3 cut(s) 118, 139, 169
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 112, 132
HpyCH4III ACNGT 2 cut(s) 32, 164
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 19, 77, 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 245, 251
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 233
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 96, 230, 236
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 3 cut(s) 45, 86, 160
MaeI CTAG 3 cut(s) 104, 125, 221
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 73
MluCI AATT 2 cut(s) 119, 262
MlyI GAGTC 1 cut(s) 107
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 230, 245, 251
NdeII GATC 1 cut(s) 50
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 209
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 107
SetI ASST 5 cut(s) 90, 198, 222, 226, 247
SfaNI GCATC 3 cut(s) 45, 86, 160
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 2 cut(s) 119, 262
SspMI CTAG 3 cut(s) 104, 125, 221
TaaI ACNGT 2 cut(s) 32, 164
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 53, 199
TasI AATT 2 cut(s) 119, 262
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 1 cut(s) 245
XapI RAATTY 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 3 cut(s) 104, 125, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.