Rh4AG028000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
5654409 .. 5657606
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG028000.1

Sequence Viewer

Length: 1599 bp
ATGGCCAAACTAAGAAACACTGTCTTCCTCTATTTCTCATGTTTCTGCATGCATTATTTTTCTTCTTCTCATGCACAAACACAAAATGCAACACTCAAGCAAGGCCAACAGCTACGCGATCAGGATGGTGATTATCTTGTTTCCGAAAATGGTTTGTTTAAGTTAGGCTTCTTCAGTCCTGGAAACTCAAGCGTTTTCGGTGCTACAAGTAATCGTTACTTAGGAATATGGTACTACAAACTACCAAATGATCCAGATGCAGTATGGGTAGCCAATCCAGAAACTCCGATCATTGATACATCAGGAGTATTTGCATTGGCTAGTGATGCAACATTGAAGCTCATTCATGGTGGAGGCCAAATATCTGTCTCAGATCCCAATCAAACAGTTTCTGGTAATGTGACTGTCTCCTTATTAGATACTGGAAATTTGGTCTTAAGAGAAGTAACTTCTAATGGAACACTTGGAGAAGTTCTGTGGGAAAGCTTTGACCATCCAAGCAACACATTGTTACCTGGAATGAAATTGGGTATCAATGTGGAGGCTGGACAGAATTGGACTATTTCTTCCTGGTTCAGCGATCAAATCCCTGCAACAGGTGTTTTTAGGCTTGGCGTTGATCCTGGTAGCACCAACCAATTGATCATCTGGAGGCGAGATGAAGTATACTGGAGCAGTGGGGTCTGGGAAAATGGAACCTTTCAAAATGCTCCTGAAATGACAAGAAGGGTTGATCTATTTGAGTTCACTTTTGTTTCAAACAAGGAAGATAAGTACTTTACTTATACCGTTAAAAACAGGTCTAGTGTTTCAAGGTGGGAACTGAATGCTTGGGGCCAAATCATGCACTCCACTCTCAACGGTACTACTTGGGAGAGCACAGAAGCTAGTCCATGCACATTCAACTTGACTAATCCGGGAGCCCTGTGCATAGAGGAGAAGCCCTCTGAATGCAGGAATGGCTCGGACGGACTTGTACCAGTAAGAGGCTATTTTGATGGAAACGAAATTTTACATCATGACAACAATACTGAAATGACCATTAGTGATTGCCATGCTACTTGCTGGAGTGACTGCGCCTGTATTGGCTACAAAAGTATATATACCAATGGGACTGGGTGTGTGTTTATGAGTGGAGAAGCGAAATTTATCCCGAATAGTTACTTTGATGCTACTTATGTCCTTAACATATGGAATCATAGCAAAGATGGAACACCAGCAGAAGGAAGCAAAACAAGCAATTTAACACGAGATATAAAGAAAAAATGGTGGATATGGTGCATCGCCTGGGAATTGTGGAAACAAGGCCAGACCCTGGAGATAAAGGACACATCACTTGACTGTGGTTCCAAAGAGGAAGTTTTAAAATTTATTCAGGTTGGTCTCTTATGTGTTCAAGAGTATGCAGAAGATAGAGCTACTATGTCAGAAGTAATATCAATGCTTACAAGTGATGTCACACCTTTGTCTGATCCAAAGCAACCTGCATACACTATTTCAAGAAGTGAAGCAGCTGGGTCAACGCGTACGTTACCTGATAGAAGTTCAAATACAGCTTCAGTAAATAATGTATCCATTACTTTGATGGAAGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

532

Amino Acids

59.17

Weight (kDa)

4.98

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 191 8.7e-27 D-mannose binding lectin
S_locus_glycop PF00954 224 - 319 8.3e-09 S-locus glycoprotein domain
PAN_2 PF08276 318 - 379 9.4e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1492
AccB7I CCANNNNNTGG 1 cut(s) 1315
AccI GTMKAC 1 cut(s) 666
AccII CGCG 2 cut(s) 117, 1525
AclWI GGATC 4 cut(s) 245, 368, 614, 1466
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 427, 1008, 1145, 1367
AcuI CTGAAG 2 cut(s) 157, 1542
AfaI GTAC 5 cut(s) 233, 776, 865, 978, 1528
AfiI CCNNNNNNNGG 4 cut(s) 596, 986, 1223, 1315
AflII CTTAAG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 1523
AgsI TTSAA 8 cut(s) 337, 704, 759, 813, 904, 1397, 1500, 1548
AjnI CCWGG 6 cut(s) 178, 514, 569, 622, 1286, 1314
AluBI AGCT 7 cut(s) 112, 340, 486, 887, 1418, 1514, 1556
AluI AGCT 7 cut(s) 112, 340, 486, 887, 1418, 1514, 1556
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 3 cut(s) 373, 412, 1388
AlwI GGATC 4 cut(s) 245, 368, 614, 1466
AlwNI CAGNNNCTG 2 cut(s) 392, 1315
AoxI GGCC 5 cut(s) 3, 103, 355, 835, 1306
ApeKI GCWGC 1 cut(s) 1511
ApoI RAATTY 4 cut(s) 427, 1008, 1145, 1367
AspLEI GCGC 1 cut(s) 1079
AspS9I GGNCC 1 cut(s) 835
AsuC2I CCSGG 1 cut(s) 918
AsuHPI GGTGA 1 cut(s) 140
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 925
BarI GAAGNNNNNNTAC 2 cut(s) 1534, 1566
BauI CACGAG 1 cut(s) 1248
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 1 cut(s) 1523
BccI CCATC 5 cut(s) 119, 501, 992, 1202, 1579
BciT130I CCWGG 6 cut(s) 180, 516, 571, 624, 1288, 1316
BciVI GTATCC 1 cut(s) 1582
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 1 cut(s) 918
BcoDI GTCTC 3 cut(s) 373, 412, 1388
BfaI CTAG 3 cut(s) 321, 804, 888
BfrI CTTAAG 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 1492
BfuI GTATCC 1 cut(s) 1582
BisI GCNGC 1 cut(s) 1512
BlsI GCNGC 1 cut(s) 1513
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 7 cut(s) 180, 516, 571, 624, 918, 1288, 1316
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 4 cut(s) 697, 836, 922, 1348
BmrFI CCNGG 7 cut(s) 180, 516, 571, 624, 918, 1288, 1316
BmrI ACTGGG 1 cut(s) 1125
BmsI GCATC 4 cut(s) 247, 316, 1159, 1290
BmuI ACTGGG 1 cut(s) 1125
BpiI GAAGAC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 4 cut(s) 670, 691, 1087, 1337
BpuEI CTTGAG 2 cut(s) 80, 172
BpuMI CCSGG 1 cut(s) 918
BsaBI GATNNNNATC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 1388
BsaJI CCNNGG 2 cut(s) 1287, 1314
Bsc4I CCNNNNNNNGG 4 cut(s) 596, 986, 1223, 1315
Bse1I ACTGG 4 cut(s) 427, 674, 980, 1120
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 6 cut(s) 180, 516, 571, 624, 1288, 1316
BseDI CCNNGG 2 cut(s) 1287, 1314
BseGI GGATG 2 cut(s) 130, 493
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 596, 986, 1223, 1315
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 427, 674, 980, 1120
BseRI GAGGAG 1 cut(s) 950
BseXI GCAGC 1 cut(s) 1523
BseYI CCCAGC 1 cut(s) 1514
Bsh1236I CGCG 2 cut(s) 117, 1525
BshFI GGCC 5 cut(s) 5, 105, 357, 837, 1308
BsiHKAI GWGCWC 1 cut(s) 881
BsiSI CCGG 1 cut(s) 917
BsiWI CGTACG 1 cut(s) 1526
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 4 cut(s) 596, 986, 1223, 1315
BsmAI GTCTC 3 cut(s) 373, 412, 1388
BsmFI GGGAC 1 cut(s) 1126
BsmI GAATGC 2 cut(s) 832, 956
BsnI GGCC 5 cut(s) 5, 105, 357, 837, 1308
Bso31I GGTCTC 1 cut(s) 1388
Bsp1286I GDGCHC 2 cut(s) 881, 925
Bsp143I GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
BspANI GGCC 5 cut(s) 5, 105, 357, 837, 1308
BspCNI CTCAG 1 cut(s) 383
BspFNI CGCG 2 cut(s) 117, 1525
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 4 cut(s) 697, 836, 922, 1348
BspMI ACCTGC 1 cut(s) 1492
BspPI GGATC 4 cut(s) 245, 368, 614, 1466
BspTI CTTAAG 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 1388
BsrI ACTGG 4 cut(s) 427, 674, 980, 1120
BssECI CCNNGG 2 cut(s) 1287, 1314
BssMI GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
BssNAI GTATAC 1 cut(s) 667
BssSI CACGAG 1 cut(s) 1248
Bst1107I GTATAC 1 cut(s) 667
Bst2BI CACGAG 1 cut(s) 1248
Bst2UI CCWGG 6 cut(s) 180, 516, 571, 624, 1288, 1316
Bst4CI ACNGT 6 cut(s) 22, 388, 406, 790, 863, 1343
BstAFI CTTAAG 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 11, 220, 370
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 130, 493
BstFNI CGCG 2 cut(s) 117, 1525
BstHHI GCGC 1 cut(s) 1079
BstKTI GATC 9 cut(s) 121, 253, 291, 376, 583, 622, 645, 736, 1474
BstMAI GTCTC 3 cut(s) 373, 412, 1388
BstMBI GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
BstMWI GCNNNNNNNGC 3 cut(s) 326, 960, 1236
BstNI CCWGG 6 cut(s) 180, 516, 571, 624, 1288, 1316
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 7 cut(s) 178, 514, 569, 622, 916, 1286, 1314
BstUI CGCG 2 cut(s) 117, 1525
BstV1I GCAGC 1 cut(s) 1523
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 667
BsuI GTATCC 1 cut(s) 1582
BsuRI GGCC 5 cut(s) 5, 105, 357, 837, 1308
BtgZI GCGATG 1 cut(s) 1267
BtsCI GGATG 2 cut(s) 130, 493
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 2 cut(s) 18, 682
BveI ACCTGC 1 cut(s) 1492
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 2 cut(s) 392, 1315
CciI TCATGA 1 cut(s) 1018
CfoI GCGC 1 cut(s) 1079
Cfr13I GGNCC 1 cut(s) 835
Csp6I GTAC 5 cut(s) 232, 775, 864, 977, 1527
CviAII CATG 8 cut(s) 39, 49, 71, 347, 844, 894, 1019, 1055
CviQI GTAC 5 cut(s) 232, 775, 864, 977, 1527
DdeI CTNAG 3 cut(s) 11, 220, 370
DpnI GATC 9 cut(s) 120, 252, 290, 375, 582, 621, 644, 735, 1473
DpnII GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
DraI TTTAAA 1 cut(s) 1365
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 925
Eco31I GGTCTC 1 cut(s) 1388
Eco57I CTGAAG 2 cut(s) 157, 1542
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoRII CCWGG 6 cut(s) 178, 514, 569, 622, 1286, 1314
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 925
FaeI CATG 8 cut(s) 42, 52, 74, 350, 847, 897, 1022, 1058
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 1126
FatI CATG 8 cut(s) 38, 48, 70, 346, 843, 893, 1018, 1054
FauNDI CATATG 1 cut(s) 1190
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 1512
FokI GGATG 2 cut(s) 137, 480
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 1 cut(s) 1512
FspBI CTAG 3 cut(s) 321, 804, 888
GlaI GCGC 1 cut(s) 1078
GluI GCNGC 1 cut(s) 1512
GsaI CCCAGC 1 cut(s) 1518
GsuI CTGGAG 4 cut(s) 670, 691, 1087, 1337
HaeIII GGCC 5 cut(s) 5, 105, 357, 837, 1308
HapII CCGG 1 cut(s) 917
HhaI GCGC 1 cut(s) 1079
Hin1II CATG 8 cut(s) 42, 52, 74, 350, 847, 897, 1022, 1058
Hin6I GCGC 1 cut(s) 1077
HinP1I GCGC 1 cut(s) 1077
HincII GTYRAC 1 cut(s) 1521
HindII GTYRAC 1 cut(s) 1521
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 1 cut(s) 1195
HpaII CCGG 1 cut(s) 917
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 667, 747, 1521
Hpy188I TCNGA 7 cut(s) 145, 288, 373, 949, 967, 1429, 1471
Hpy8I GTNNAC 3 cut(s) 667, 747, 1521
HpyAV CCTTC 3 cut(s) 720, 1217, 1583
HpyCH4III ACNGT 6 cut(s) 22, 388, 406, 790, 863, 1343
HpyCH4IV ACGT 1 cut(s) 1529
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 960, 1236
HpyF3I CTNAG 3 cut(s) 11, 220, 370
HpySE526I ACGT 1 cut(s) 1529
Hsp92II CATG 8 cut(s) 42, 52, 74, 350, 847, 897, 1022, 1058
HspAI GCGC 1 cut(s) 1077
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
LmnI GCTCC 3 cut(s) 672, 715, 920
Lsp1109I GCAGC 1 cut(s) 1523
LweI GCATC 4 cut(s) 247, 316, 1159, 1290
MaeI CTAG 3 cut(s) 321, 804, 888
MaeII ACGT 1 cut(s) 1529
MaeIII GTNAC 8 cut(s) 215, 400, 445, 510, 1070, 1160, 1456, 1530
MalI GATC 9 cut(s) 120, 252, 290, 375, 582, 621, 644, 735, 1473
MboI GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
MboII GAAGA 7 cut(s) 16, 54, 57, 163, 558, 779, 1421
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 881, 925
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 427, 524, 553, 638, 1008, 1145, 1240, 1292, 1367
MluI ACGCGT 1 cut(s) 1523
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 38, 347, 535, 645, 928, 955, 980, 1348
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 54
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 159, 437, 792, 1185, 1244, 1364
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1514
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 1 cut(s) 917
MspR9I CCNGG 7 cut(s) 180, 516, 571, 624, 918, 1288, 1316
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 2 cut(s) 832, 956
MvaI CCWGG 6 cut(s) 180, 516, 571, 624, 1288, 1316
MvnI CGCG 2 cut(s) 117, 1525
MwoI GCNNNNNNNGC 3 cut(s) 326, 960, 1236
NciI CCSGG 1 cut(s) 918
NdeI CATATG 1 cut(s) 1190
NdeII GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
NlaIII CATG 8 cut(s) 42, 52, 74, 350, 847, 897, 1022, 1058
NlaIV GGNNCC 4 cut(s) 697, 836, 922, 1348
NmuCI GTSAC 3 cut(s) 400, 1070, 1456
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PagI TCATGA 1 cut(s) 1018
PctI GAATGC 2 cut(s) 832, 956
PfeI GAWTC 1 cut(s) 1195
Pfl23II CGTACG 1 cut(s) 1526
PflMI CCANNNNNTGG 1 cut(s) 1315
PfoI TCCNGGA 2 cut(s) 178, 916
PkrI GCNGC 1 cut(s) 1513
Psp6I CCWGG 6 cut(s) 178, 514, 569, 622, 1286, 1314
PspFI CCCAGC 1 cut(s) 1514
PspGI CCWGG 6 cut(s) 178, 514, 569, 622, 1286, 1314
PspLI CGTACG 1 cut(s) 1526
PspN4I GGNNCC 4 cut(s) 697, 836, 922, 1348
PspPI GGNCC 1 cut(s) 835
PstNI CAGNNNCTG 2 cut(s) 392, 1315
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 1514
RsaI GTAC 5 cut(s) 233, 776, 865, 978, 1528
RsaNI GTAC 5 cut(s) 232, 775, 864, 977, 1527
SaqAI TTAA 6 cut(s) 159, 437, 792, 1185, 1244, 1364
SatI GCNGC 1 cut(s) 1512
Sau3AI GATC 9 cut(s) 118, 250, 288, 373, 580, 619, 642, 733, 1471
Sau96I GGNCC 1 cut(s) 835
ScaI AGTACT 1 cut(s) 776
ScrFI CCNGG 7 cut(s) 180, 516, 571, 624, 918, 1288, 1316
SduI GDGCHC 2 cut(s) 881, 925
SfaNI GCATC 4 cut(s) 247, 316, 1159, 1290
SmlI CTYRAG 3 cut(s) 95, 187, 436
SmoI CTYRAG 3 cut(s) 95, 187, 436
SphI GCATGC 1 cut(s) 52
Sse9I AATT 9 cut(s) 427, 524, 553, 638, 1008, 1145, 1240, 1292, 1367
SspMI CTAG 3 cut(s) 321, 804, 888
StyD4I CCNGG 7 cut(s) 178, 514, 569, 622, 916, 1286, 1314
TaaI ACNGT 6 cut(s) 22, 388, 406, 790, 863, 1343
TaiI ACGT 1 cut(s) 1532
TasI AATT 9 cut(s) 427, 524, 553, 638, 1008, 1145, 1240, 1292, 1367
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 1 cut(s) 1195
Tru1I TTAA 6 cut(s) 159, 437, 792, 1185, 1244, 1364
Tru9I TTAA 6 cut(s) 159, 437, 792, 1185, 1244, 1364
TscAI CASTG 2 cut(s) 25, 682
TseFI GTSAC 3 cut(s) 400, 1070, 1456
TseI GCWGC 1 cut(s) 1511
Tsp45I GTSAC 3 cut(s) 400, 1070, 1456
TspDTI ATGAA 3 cut(s) 335, 536, 675
TspGWI ACGGA 1 cut(s) 984
TspRI CASTG 2 cut(s) 25, 682
Van91I CCANNNNNTGG 1 cut(s) 1315
Vha464I CTTAAG 1 cut(s) 436
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 4 cut(s) 427, 1008, 1145, 1367
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 2 cut(s) 261, 1582
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 3 cut(s) 321, 804, 888
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.