Rh2BG053400

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001889
Physical Location & Seq
Reverse (-)
3800049 .. 3801350
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG053400.1

Sequence Viewer

Length: 1302 bp
ATGGCTAAACTGAGAAGCCTGTTGCTTCTCTTTTTCTCATGTTTTGGCATGCAATCTTTGTTTTCTTCTTATGCAGAGACACTGATATCTACAATGAAGCAAGGCCAACAGCTGAGTGACCTGAGTTCTGATCATCTGGTTTCGGATAACGGCTTCTACAAGTTGGGATTCTTCAGTCCTGGTTCTACTAGTAACCTTGGTGCTACCAGTAATCGTTTCTTGGGAATATGGTACAGCAAACTACCAAATCATCCTGATGCAATCTGGGTGGGGAACCCAGAATCCCCGATCAACGATTCATCTGCTGTGTTTAAGTTGGATAGTGATGGAAAGTTGAAGATTGTATATGATGGAGGCGTAATATATGTGTCAGATGTCAATCAAACAGTTTCTGGTAACGTCACTCTCTCTTTACTTGGTACTGGAAATCTTGTCTTGAGAGAAGTAGATTCAAAGGGAGCAGCTGGAAATGTTTTATGGGAAAGTTTTAGCAATGCATCAAATACATTGTTGCCTGGAATGAAGCTGGGAAGGAACCTCAGGACCGGAGAGAATTGGACTATTTCTTCATGGTTTAGTGATCAGTCCCCTGTACCAGGTGCTTTCAAGCTCGGTGTTGATCCCAGTGGTACTGACCAATTGATTGTCTGGTGGCGAGAGGAGGTATACTGGAGCAGTGGAGTCTGGGAAGATGGAAATTTTCAAGATGCCCCCGAATTGACGAAAAGGGATGATTTGTTTTGGTTCACTTTTGTTTCAAACAGTGAGCAAAAGTACTTCTCTTATTATCTCAAGAACAATCTCACTCTTGATGTTCCAGAAAACAATACTACTATATCAAGGTGGGAACTGAATTCTTGGGGGCAAATTTTGCAGTCAATTCTATCTGTAAATGGTAGTATATGGGAAACCACAACTATCAGTCCTTGCACCTTCAACCCTAAGTATCCGGATGCGGTGTGCATAGAGGAGAAGACCTCCCAATGCAGGAATGGCTCTGAGATATTTGTTCCAACAAACGGTTATTTGAATGGAACTGAATTGACATACAGTAATAAGAGTACTAACTTGGTTCTCAGTGATTGTCACGCTACTTGCTGGAGCGATTGCACCTGTATCGGCTATGAAACAATATACACGAATGGGTCTGGGTGTCTGTTTTTGAGGGAAGGAGCAAAGTTTGTTCAGAACAATTACTATGGAGTTACTTATCTCTTGACAATACCAACCAAAGGTACACCTGCCCCAACATATACCTATGATTTTTGCTCTTTGCTGTTTCGAATTTCTTTCAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

433

Amino Acids

48.23

Weight (kDa)

4.87

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 191 8.9e-25 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1249
Acc36I ACCTGC 1 cut(s) 1249
AccI GTMKAC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 949
AciI CCGC 1 cut(s) 956
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 4 cut(s) 697, 853, 867, 1284
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 7 cut(s) 233, 421, 594, 631, 776, 1063, 1237
AfiI CCNNNNNNNGG 4 cut(s) 596, 987, 1019, 1232
AgsI TTSAA 8 cut(s) 337, 453, 607, 704, 759, 937, 1030, 1294
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 3 cut(s) 178, 514, 595
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 112, 464, 526, 610
AluI AGCT 4 cut(s) 112, 464, 526, 610
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 949
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 4 cut(s) 697, 853, 867, 1284
AspS9I GGNCC 1 cut(s) 543
AsuII TTCGAA 1 cut(s) 1282
AvaII GGWCC 1 cut(s) 543
AxyI CCTNAGG 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 980
BbvI GCAGC 1 cut(s) 473
BccI CCATC 3 cut(s) 320, 344, 686
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 4 cut(s) 284, 318, 1099, 1133
BciT130I CCWGG 3 cut(s) 180, 516, 597
BciVI GTATCC 1 cut(s) 957
BclI TGATCA 2 cut(s) 130, 580
BcoDI GTCTC 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 1249
BfuI GTATCC 1 cut(s) 957
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 2 cut(s) 776, 1063
Bme1390I CCNGG 3 cut(s) 180, 516, 597
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 275, 536
BmrFI CCNGG 3 cut(s) 180, 516, 597
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 4 cut(s) 247, 506, 697, 943
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpmI CTGGAG 2 cut(s) 691, 1120
Bpu14I TTCGAA 1 cut(s) 1282
BpuEI CTTGAG 2 cut(s) 457, 776
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 2 cut(s) 545, 949
Bsc4I CCNNNNNNNGG 4 cut(s) 596, 987, 1019, 1232
Bse1I ACTGG 4 cut(s) 207, 427, 624, 674
Bse21I CCTNAGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 499
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 949
BseBI CCWGG 3 cut(s) 180, 516, 597
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 250, 736, 958
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 596, 987, 1019, 1232
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 5 cut(s) 104, 113, 553, 990, 1090
BseNI ACTGG 4 cut(s) 207, 427, 624, 674
BseRI GAGGAG 2 cut(s) 674, 983
BseXI GCAGC 1 cut(s) 473
BseYI CCCAGC 1 cut(s) 526
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 546, 950
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 4 cut(s) 596, 987, 1019, 1232
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 1282
Bsp13I TCCGGA 1 cut(s) 949
Bsp143I GATC 4 cut(s) 130, 288, 580, 619
BspACI CCGC 1 cut(s) 956
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 5 cut(s) 105, 114, 552, 991, 1089
BspEI TCCGGA 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 275, 536
BspMI ACCTGC 1 cut(s) 1249
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 1282
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 4 cut(s) 207, 427, 624, 674
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 130, 288, 580, 619
BssNAI GTATAC 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 667
Bst2UI CCWGG 3 cut(s) 180, 516, 597
Bst4CI ACNGT 4 cut(s) 388, 764, 1022, 1052
BstAPI GCANNNNNTGC 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 1282
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 7 cut(s) 11, 113, 122, 539, 942, 999, 1076
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 250, 736, 958
BstKTI GATC 4 cut(s) 133, 291, 583, 622
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 130, 288, 580, 619
BstMWI GCNNNNNNNGC 2 cut(s) 871, 993
BstNI CCWGG 3 cut(s) 180, 516, 597
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 178, 514, 595
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 1 cut(s) 980
BstZ17I GTATAC 1 cut(s) 667
Bsu36I CCTNAGG 1 cut(s) 539
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 250, 736, 958
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 5 cut(s) 80, 631, 682, 769, 1084
BveI ACCTGC 1 cut(s) 1249
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 543
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 7 cut(s) 232, 420, 593, 630, 775, 1062, 1236
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 3 cut(s) 39, 49, 570
CviQI GTAC 7 cut(s) 232, 420, 593, 630, 775, 1062, 1236
DdeI CTNAG 7 cut(s) 11, 113, 122, 539, 942, 999, 1076
DpnI GATC 4 cut(s) 132, 290, 582, 621
DpnII GATC 4 cut(s) 130, 288, 580, 619
Eco130I CCWWGG 1 cut(s) 196
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 178, 514, 595
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 42, 52, 573
FaqI GGGAC 1 cut(s) 571
FatI CATG 3 cut(s) 38, 48, 569
FbaI TGATCA 2 cut(s) 130, 580
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 3 cut(s) 237, 743, 965
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 462
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 2 cut(s) 691, 1120
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 546, 950
Hin1II CATG 3 cut(s) 42, 52, 573
HinfI GANTC 5 cut(s) 168, 281, 296, 449, 681
HpaII CCGG 2 cut(s) 546, 950
Hpy166II GTNNAC 3 cut(s) 667, 747, 1238
Hpy188I TCNGA 5 cut(s) 130, 145, 373, 1000, 1188
Hpy188III TCNNGA 9 cut(s) 254, 436, 541, 704, 793, 809, 818, 950, 1216
Hpy8I GTNNAC 3 cut(s) 667, 747, 1238
HpyAV CCTTC 3 cut(s) 525, 943, 1163
HpyCH4III ACNGT 4 cut(s) 388, 764, 1022, 1052
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 9 cut(s) 52, 74, 260, 497, 874, 930, 963, 987, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 871, 993
HpyF3I CTNAG 7 cut(s) 11, 113, 122, 539, 942, 999, 1076
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 3 cut(s) 42, 52, 573
Kpn2I TCCGGA 1 cut(s) 949
Ksp22I TGATCA 2 cut(s) 130, 580
Kzo9I GATC 4 cut(s) 130, 288, 580, 619
LmnI GCTCC 4 cut(s) 458, 672, 1101, 1172
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 4 cut(s) 247, 506, 697, 943
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 6 cut(s) 116, 191, 395, 400, 1085, 1204
MalI GATC 4 cut(s) 132, 290, 582, 621
MboI GATC 4 cut(s) 130, 288, 580, 619
MboII GAAGA 6 cut(s) 57, 163, 349, 558, 701, 985
MfeI CAATTG 1 cut(s) 638
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 2 cut(s) 297, 1037
MnlI CCTC 7 cut(s) 347, 548, 652, 655, 961, 988, 1158
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 949
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 2 cut(s) 112, 464
MspI CCGG 2 cut(s) 546, 950
MspR9I CCNGG 3 cut(s) 180, 516, 597
MunI CAATTG 1 cut(s) 638
MvaI CCWGG 3 cut(s) 180, 516, 597
MwoI GCNNNNNNNGC 2 cut(s) 871, 993
NdeII GATC 4 cut(s) 130, 288, 580, 619
NlaIII CATG 3 cut(s) 42, 52, 573
NlaIV GGNNCC 2 cut(s) 275, 536
NmuCI GTSAC 3 cut(s) 116, 400, 1085
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 52
NspV TTCGAA 1 cut(s) 1282
PaeI GCATGC 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 1249
PfeI GAWTC 4 cut(s) 168, 281, 296, 449
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp6I CCWGG 3 cut(s) 178, 514, 595
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 3 cut(s) 178, 514, 595
PspN4I GGNNCC 2 cut(s) 275, 536
PspPI GGNCC 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 2 cut(s) 112, 464
RsaI GTAC 7 cut(s) 233, 421, 594, 631, 776, 1063, 1237
RsaNI GTAC 7 cut(s) 232, 420, 593, 630, 775, 1062, 1236
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 130, 288, 580, 619
Sau96I GGNCC 1 cut(s) 543
ScaI AGTACT 2 cut(s) 776, 1063
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 3 cut(s) 180, 516, 597
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 4 cut(s) 247, 506, 697, 943
SfuI TTCGAA 1 cut(s) 1282
SinI GGWCC 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 436, 791
SmoI CTYRAG 2 cut(s) 436, 791
SpeI ACTAGT 1 cut(s) 188
SphI GCATGC 1 cut(s) 52
SsiI CCGC 1 cut(s) 956
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 178, 514, 595
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 4 cut(s) 388, 764, 1022, 1052
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 1282
TatI WGTACW 2 cut(s) 774, 1061
TfiI GAWTC 4 cut(s) 168, 281, 296, 449
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 5 cut(s) 87, 631, 682, 769, 1084
TseFI GTSAC 3 cut(s) 116, 400, 1085
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 116, 400, 1085
TspDTI ATGAA 5 cut(s) 110, 288, 536, 558, 1140
TspRI CASTG 5 cut(s) 87, 631, 682, 769, 1084
VpaK11BI GGWCC 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 4 cut(s) 697, 853, 867, 1284
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 1 cut(s) 189
ZrmI AGTACT 2 cut(s) 776, 1063
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.