Rorug02G0008500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001889
Physical Location & Seq
Forward (+)
719451 .. 719825
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0008500.1

Sequence Viewer

Length: 375 bp
ATGTTCCGATCACATACCGTTTCTGCCAACGATGATGATATGCACAGAAGAATAATGGCCGAATTTGTTAAAGAAAAAGAAGAAGAGGCGTGCAATAAGTTGCGTAACAGAAAGCACGCTGATTACCAGGTTTATTTGGGTCCTAATGAAGAGGGAAACAAAAATGGTAACTTTTCAATGCTGCATGATGATTATGAGTACCATGATGATGAGTTGCATGAGGGACGCATACTTGGGGGCGAGGCGGCGACGCTTAAACGCAGACATTGCAAGGAGCATGAATGGGATTCAAAAGCAAAAAATTTGCCACCTGAAATCTCATTTCTTCAGGACTACGCCTTTGTGTTATGTGTAATTATTCTTGTAGTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

124

Amino Acids

14.56

Weight (kDa)

5.57

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 62, 301
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 2 cut(s) 177, 291
AjnI CCWGG 1 cut(s) 126
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 62, 301
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
AspS9I GGNCC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 128
BisI GCNGC 2 cut(s) 182, 246
BlsI GCNGC 2 cut(s) 183, 247
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 265
BssMI GATC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 78, 144
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 91, 117
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 59
Cac8I GCNNGC 2 cut(s) 91, 117
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 2 cut(s) 234, 259
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 185, 203, 218, 278
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
CviQI GTAC 1 cut(s) 199
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 78, 144
EarI CTCTTC 2 cut(s) 78, 144
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 188, 206, 221, 281
FaiI YATR 9 cut(s) 15, 41, 186, 195, 204, 219, 230, 279, 349
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 202, 217, 277
Fnu4HI GCNGC 2 cut(s) 182, 246
Fsp4HI GCNGC 2 cut(s) 182, 246
GluI GCNGC 2 cut(s) 182, 246
HaeIII GGCC 1 cut(s) 59
HgaI GACGC 2 cut(s) 234, 259
Hin1II CATG 4 cut(s) 188, 206, 221, 281
HinfI GANTC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 5 cut(s) 43, 93, 184, 217, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 188, 206, 221, 281
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 113, 140, 314, 324
Lsp1109I GCAGC 1 cut(s) 168
MabI ACCWGGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 104, 167
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 5 cut(s) 60, 92, 95, 161, 317
MluCI AATT 3 cut(s) 62, 301, 354
MnlI CCTC 4 cut(s) 79, 145, 214, 235
MseI TTAA 2 cut(s) 69, 255
MslI CAYNNNNRTG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 1 cut(s) 8
NlaIII CATG 4 cut(s) 188, 206, 221, 281
NlaIV GGNNCC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 183, 247
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 140
PspPPI RGGWCCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 69, 255
SatI GCNGC 2 cut(s) 182, 246
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 128
SetI ASST 2 cut(s) 132, 313
SexAI ACCWGGT 1 cut(s) 126
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 3 cut(s) 62, 301, 354
SsiI CCGC 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 19
TasI AATT 3 cut(s) 62, 301, 354
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 69, 255
Tru9I TTAA 2 cut(s) 69, 255
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 162, 294
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 62, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.