RLG00000009978

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001889
Physical Location & Seq
Forward (+)
61475077 .. 61476760
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009978

Sequence Viewer

Length: 1257 bp
ATGGCCAAACTAAGAAACACTATCTTCCTCTATTTCTCATGTTTCTGCATGCATTATTTTTCTTCTTCTCATGCACAAACACAAAATGCTACACTCAAGCAAGGCCAACAGTTACGCGACCAGGATGGTGATTATCTTGTTTCCGAAAATGGTTTGTTCAAGTTAGGCTTCTTCAGTCCTGGAAACTCAAGCGTTTTCGGTGCTACAAGTAATCGTTACTTAGGAATATGGTACTACAAACTACCAAATGATCCAGATGCAGTATGGGTAGCCAATCCAGAAACTCCGATCATCGATACATCAGGAGTATTTGCATTGGCTAGTGATGCAACACTGAAGCTCATTCATGGTGGAGGCCAAATATCTGTCTCAGATCCCAATCAAACAGTTTCTGGTAATGTGACTGTCTCCTTATTAGATACTGGAAATTTGGTCTTAAGAGAAGTAACTTCTAATGGAACACTTGGAGAAGTTTTGTGGGAAAGCTTTGACCATCCAACCAACACATTGTTACCTGGAATGAAATTGGGTATCAGTGTCGAGGCTGGACAGAATTGGACTATTTCTTCCTGGTTCAGCGATCAAATCCCTGCACCAGGTGTTTTTAGTCTTGGCGTTGATCCTGGTAGCACCAACCAATTGATCATCTGGAGGCGAGATGAAGTATACTGGAGCAGTGGGGTCTGGGAAAATGGAACCTTTCAAAATGCTCCTGAAATGACAAGAAGGGTTGATCTATTTGAGTTCAATTTTGTTTCAAACAAGGAAGATAAGTACTTTACTTATACCGTTAAAAACAGGTCTACTGTTTCAAGGTGGGAACTGAATGCTTGGGGCCAAATCATGCAGTCCACTTTAACTCTCAACGGTACTATTTGGGAGAGCACAGAAGCTAGTCCATGCACATTCAACTTGACTAATCCGGGAGCCCTGTGCATAGAGGAGAAGCCCTCTGAATGCAGGAATGGCTCGGATGGACTTGTACCAGTAAGAGGCTATTTTGATGGAAACGAAATTTTACATCATGACAACAATACTGAAATGACCATTAGTGATTGCCATGCTACTTGCTGGAGTGACTGCGCCTGTATTGGCTACAAAAGTATATATACCAATGGGACTGGGTGTGTGTTTATGAGTGGAGAAGCGAAATTTATCCCGAATAGTTACTTTGATGCTACTTATGTCCTTAACATATGGAATCATAGCAAAGGTAACTTTCAGATAAATGGGATGCAGGCCAAGAGCAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

419

Amino Acids

46.43

Weight (kDa)

4.94

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 191 9e-27 D-mannose binding lectin
S_locus_glycop PF00954 224 - 321 9.5e-10 S-locus glycoprotein domain
PAN_2 PF08276 320 - 381 6.6e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 666, 803
AccII CGCG 1 cut(s) 117
AclWI GGATC 3 cut(s) 245, 368, 614
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 427, 1014, 1151
AcuI CTGAAG 2 cut(s) 157, 356
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 4 cut(s) 233, 776, 871, 984
AfiI CCNNNNNNNGG 2 cut(s) 596, 992
AflII CTTAAG 1 cut(s) 436
AgsI TTSAA 6 cut(s) 160, 704, 748, 759, 813, 910
AjnI CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
AluBI AGCT 3 cut(s) 340, 486, 893
AluI AGCT 3 cut(s) 340, 486, 893
Alw21I GWGCWC 1 cut(s) 887
Alw26I GTCTC 2 cut(s) 373, 412
AlwI GGATC 3 cut(s) 245, 368, 614
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 5 cut(s) 3, 103, 355, 835, 1239
ApoI RAATTY 3 cut(s) 427, 1014, 1151
AspLEI GCGC 1 cut(s) 1085
AspS9I GGNCC 1 cut(s) 835
AsuC2I CCSGG 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 140
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 931
Bbv12I GWGCWC 1 cut(s) 887
BccI CCATC 4 cut(s) 119, 501, 968, 998
BciT130I CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 1 cut(s) 924
BcoDI GTCTC 2 cut(s) 373, 412
BfaI CTAG 2 cut(s) 321, 894
BfrI CTTAAG 1 cut(s) 436
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 3 cut(s) 697, 836, 928
BmrFI CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
BmrI ACTGGG 1 cut(s) 1131
BmsI GCATC 4 cut(s) 247, 316, 1165, 1224
BmuI ACTGGG 1 cut(s) 1131
BplI GAGNNNNNCTC 2 cut(s) 935, 967
BpmI CTGGAG 3 cut(s) 670, 691, 1093
BpuEI CTTGAG 2 cut(s) 80, 172
BpuMI CCSGG 1 cut(s) 924
Bsa29I ATCGAT 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 992
Bse1I ACTGG 4 cut(s) 427, 674, 986, 1126
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BseCI ATCGAT 1 cut(s) 294
BseGI GGATG 4 cut(s) 130, 493, 979, 1239
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 596, 992
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 427, 674, 986, 1126
BseRI GAGGAG 1 cut(s) 956
BsgI GTGCAG 1 cut(s) 576
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 5 cut(s) 5, 105, 357, 837, 1241
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 887
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 1 cut(s) 1132
BslI CCNNNNNNNGG 2 cut(s) 596, 992
BsmAI GTCTC 2 cut(s) 373, 412
BsmFI GGGAC 1 cut(s) 1132
BsmI GAATGC 2 cut(s) 832, 962
BsnI GGCC 5 cut(s) 5, 105, 357, 837, 1241
Bsp1286I GDGCHC 2 cut(s) 887, 931
Bsp143I GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
BspANI GGCC 5 cut(s) 5, 105, 357, 837, 1241
BspCNI CTCAG 1 cut(s) 383
BspDI ATCGAT 1 cut(s) 294
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 3 cut(s) 697, 836, 928
BspPI GGATC 3 cut(s) 245, 368, 614
BspTI CTTAAG 1 cut(s) 436
BsrI ACTGG 4 cut(s) 427, 674, 986, 1126
BssMI GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
BssNAI GTATAC 1 cut(s) 667
Bst1107I GTATAC 1 cut(s) 667
Bst2UI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
Bst4CI ACNGT 6 cut(s) 111, 388, 406, 790, 808, 869
BstAFI CTTAAG 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 50, 1239
BstDEI CTNAG 3 cut(s) 11, 220, 370
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 4 cut(s) 130, 493, 979, 1239
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 1085
BstKTI GATC 7 cut(s) 253, 291, 376, 583, 622, 645, 736
BstMAI GTCTC 2 cut(s) 373, 412
BstMBI GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
BstMWI GCNNNNNNNGC 2 cut(s) 326, 966
BstNI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 7 cut(s) 120, 178, 514, 569, 595, 622, 922
BstUI CGCG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 667
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 5 cut(s) 5, 105, 357, 837, 1241
BsuTUI ATCGAT 1 cut(s) 294
BtsCI GGATG 4 cut(s) 130, 493, 979, 1239
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 3 cut(s) 332, 541, 682
Cac8I GCNNGC 2 cut(s) 50, 1239
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 1085
Cfr13I GGNCC 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 4 cut(s) 232, 775, 870, 983
CviAII CATG 8 cut(s) 39, 49, 71, 347, 844, 900, 1025, 1061
CviQI GTAC 4 cut(s) 232, 775, 870, 983
DdeI CTNAG 3 cut(s) 11, 220, 370
DpnI GATC 7 cut(s) 252, 290, 375, 582, 621, 644, 735
DpnII GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 931
Eco57I CTGAAG 2 cut(s) 157, 356
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoRII CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 931
FaeI CATG 8 cut(s) 42, 52, 74, 350, 847, 903, 1028, 1064
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 1132
FatI CATG 8 cut(s) 38, 48, 70, 346, 843, 899, 1024, 1060
FauNDI CATATG 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 2 cut(s) 666, 803
FokI GGATG 4 cut(s) 137, 480, 986, 1246
FriOI GRGCYC 1 cut(s) 931
FspBI CTAG 2 cut(s) 321, 894
GlaI GCGC 1 cut(s) 1084
GsuI CTGGAG 3 cut(s) 670, 691, 1093
HaeIII GGCC 5 cut(s) 5, 105, 357, 837, 1241
HapII CCGG 1 cut(s) 923
HhaI GCGC 1 cut(s) 1085
Hin1II CATG 8 cut(s) 42, 52, 74, 350, 847, 903, 1028, 1064
Hin6I GCGC 1 cut(s) 1083
HinP1I GCGC 1 cut(s) 1083
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 1 cut(s) 1201
HpaII CCGG 1 cut(s) 923
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 667, 804, 852
Hpy188I TCNGA 6 cut(s) 145, 288, 373, 955, 973, 1224
Hpy188III TCNNGA 7 cut(s) 254, 278, 303, 649, 713, 1025, 1159
Hpy8I GTNNAC 3 cut(s) 667, 804, 852
HpyAV CCTTC 1 cut(s) 720
HpyCH4III ACNGT 6 cut(s) 111, 388, 406, 790, 808, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 966
HpyF3I CTNAG 3 cut(s) 11, 220, 370
Hsp92II CATG 8 cut(s) 42, 52, 74, 350, 847, 903, 1028, 1064
HspAI GCGC 1 cut(s) 1083
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
LmnI GCTCC 3 cut(s) 672, 715, 926
LweI GCATC 4 cut(s) 247, 316, 1165, 1224
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 2 cut(s) 321, 894
MaeIII GTNAC 8 cut(s) 111, 215, 400, 445, 510, 1076, 1166, 1214
MalI GATC 7 cut(s) 252, 290, 375, 582, 621, 644, 735
MboI GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
MboII GAAGA 6 cut(s) 16, 54, 57, 163, 558, 779
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 887, 931
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 427, 524, 553, 638, 748, 1014, 1151
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 7 cut(s) 38, 347, 535, 645, 934, 961, 986
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 54
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 437, 792, 857, 1191
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 2 cut(s) 832, 962
MvaI CCWGG 6 cut(s) 122, 180, 516, 571, 597, 624
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 326, 966
NciI CCSGG 1 cut(s) 924
NdeI CATATG 1 cut(s) 1196
NdeII GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
NlaIII CATG 8 cut(s) 42, 52, 74, 350, 847, 903, 1028, 1064
NlaIV GGNNCC 3 cut(s) 697, 836, 928
NmuCI GTSAC 2 cut(s) 400, 1076
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PagI TCATGA 1 cut(s) 1024
PctI GAATGC 2 cut(s) 832, 962
PfeI GAWTC 1 cut(s) 1201
PfoI TCCNGGA 2 cut(s) 178, 922
Psp6I CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
PspGI CCWGG 6 cut(s) 120, 178, 514, 569, 595, 622
PspN4I GGNNCC 3 cut(s) 697, 836, 928
PspPI GGNCC 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 4 cut(s) 233, 776, 871, 984
RsaNI GTAC 4 cut(s) 232, 775, 870, 983
SaqAI TTAA 4 cut(s) 437, 792, 857, 1191
Sau3AI GATC 7 cut(s) 250, 288, 373, 580, 619, 642, 733
Sau96I GGNCC 1 cut(s) 835
ScaI AGTACT 1 cut(s) 776
ScrFI CCNGG 7 cut(s) 122, 180, 516, 571, 597, 624, 924
SduI GDGCHC 2 cut(s) 887, 931
SetI ASST 9 cut(s) 342, 488, 517, 601, 701, 803, 818, 895, 1216
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 4 cut(s) 247, 316, 1165, 1224
SmlI CTYRAG 3 cut(s) 95, 187, 436
SmoI CTYRAG 3 cut(s) 95, 187, 436
SphI GCATGC 1 cut(s) 52
Sse9I AATT 7 cut(s) 427, 524, 553, 638, 748, 1014, 1151
SspMI CTAG 2 cut(s) 321, 894
StyD4I CCNGG 7 cut(s) 120, 178, 514, 569, 595, 622, 922
TaaI ACNGT 6 cut(s) 111, 388, 406, 790, 808, 869
TaqI TCGA 2 cut(s) 294, 540
TasI AATT 7 cut(s) 427, 524, 553, 638, 748, 1014, 1151
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 1 cut(s) 1201
Tru1I TTAA 4 cut(s) 437, 792, 857, 1191
Tru9I TTAA 4 cut(s) 437, 792, 857, 1191
TscAI CASTG 3 cut(s) 339, 541, 682
TseFI GTSAC 2 cut(s) 400, 1076
Tsp45I GTSAC 2 cut(s) 400, 1076
TspDTI ATGAA 3 cut(s) 335, 536, 675
TspRI CASTG 3 cut(s) 339, 541, 682
Vha464I CTTAAG 1 cut(s) 436
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 427, 1014, 1151
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XmiI GTMKAC 2 cut(s) 666, 803
XspI CTAG 2 cut(s) 321, 894
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.