Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023528.1

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1052

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

actccactagaaggaggcaattggactggcaaacacgggtaaacatcattgagggaattgcacaaggacttctctatcttcataagcattctagagttagagtcatacacagagatctgaaagctagtaacattctgcttgatgaaaatatgaaccctaaaatctcagactttggaatggccagaattttcggacagaatgaatctatggcaaatacagttagagttgtcggaacatacggctatatgtctccagagtatgccatgaggggcattttctctgaaaagtctgatgtttacagttttggtgttctactgttggagattataagtggcaaaaagaacactacttttctttcatctaatggtctctgccttatcgaacttgcctgggaattgtggaaacaaggccagaccctggagataaaggacacattacttgactctggttccaacgaggaagttttaaaatttattcaggttggtctcatatgtgttcaagagtatgcagaagatagagctaccatgtcagaagtaatatcaatgcttacaagtgatgtcacacctttgtctgatccaaagcaacctgcatacactatttcaagaagtgaagcatctgggtcaacgcgtacgttacctgatagaagttcaaatacagcttcagtaaataatgtatccactactgtgatggaaggtagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

232

Amino Acids

25.95

Weight (kDa)

5.98

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	1 cut(s)	627
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	185, 469
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	11, 417
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	3 cut(s)	499, 602, 650
AjnI	CCWGG	2 cut(s)	388, 416
AleI	CACNNNNGTG	1 cut(s)	682
AluBI	AGCT	3 cut(s)	124, 520, 658
AluI	AGCT	3 cut(s)	124, 520, 658
Alw26I	GTCTC	3 cut(s)	254, 373, 490
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	179, 408
ApoI	RAATTY	2 cut(s)	185, 469
BalI	TGGCCA	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	2 cut(s)	390, 418
BciVI	GTATCC	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	254, 373, 490
BfaI	CTAG	3 cut(s)	8, 92, 125
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	684
BglII	AGATCT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	390, 418
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	390, 418
BmsI	GCATC	1 cut(s)	622
BpmI	CTGGAG	2 cut(s)	236, 439
BsaI	GGTCTC	2 cut(s)	373, 490
BsaJI	CCNNGG	2 cut(s)	389, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 417
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	390, 418
BseDI	CCNNGG	2 cut(s)	389, 416
BseLI	CCNNNNNNNGG	2 cut(s)	11, 417
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	181, 410
BsiWI	CGTACG	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	11, 417
BsmAI	GTCTC	3 cut(s)	254, 373, 490
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	181, 410
Bso31I	GGTCTC	2 cut(s)	373, 490
Bsp143I	GATC	2 cut(s)	114, 573
BspANI	GGCC	2 cut(s)	181, 410
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	568
BspTNI	GGTCTC	2 cut(s)	373, 490
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	389, 416
BssMI	GATC	2 cut(s)	114, 573
Bst2UI	CCWGG	2 cut(s)	390, 418
Bst4CI	ACNGT	4 cut(s)	219, 301, 317, 684
BstDEI	CTNAG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	2 cut(s)	117, 576
BstMAI	GTCTC	3 cut(s)	254, 373, 490
BstMBI	GATC	2 cut(s)	114, 573
BstNI	CCWGG	2 cut(s)	390, 418
BstSCI	CCNGG	2 cut(s)	388, 416
BstUI	CGCG	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	181, 410
BveI	ACCTGC	1 cut(s)	594
CaiI	CAGNNNCTG	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	2 cut(s)	264, 525
CviJI	RGCY	6 cut(s)	124, 181, 242, 410, 520, 658
CviKI_1	RGCY	6 cut(s)	124, 181, 242, 410, 520, 658
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	116, 575
DpnII	GATC	2 cut(s)	114, 573
DraI	TTTAAA	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	179
Eco31I	GGTCTC	2 cut(s)	373, 490
Eco57I	CTGAAG	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	388, 416
FaeI	CATG	2 cut(s)	267, 528
FatI	CATG	2 cut(s)	263, 524
FauNDI	CATATG	1 cut(s)	490
FspBI	CTAG	3 cut(s)	8, 92, 125
GsuI	CTGGAG	2 cut(s)	236, 439
HaeIII	GGCC	2 cut(s)	181, 410
Hin1II	CATG	2 cut(s)	267, 528
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	3 cut(s)	101, 202, 442
Hpy166II	GTNNAC	3 cut(s)	42, 297, 623
Hpy188I	TCNGA	8 cut(s)	119, 168, 193, 232, 282, 291, 531, 573
Hpy188III	TCNNGA	4 cut(s)	92, 253, 499, 602
Hpy8I	GTNNAC	3 cut(s)	42, 297, 623
HpyAV	CCTTC	2 cut(s)	5, 685
HpyCH4III	ACNGT	4 cut(s)	219, 301, 317, 684
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	3 cut(s)	61, 508, 589
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	2 cut(s)	267, 528
Kzo9I	GATC	2 cut(s)	114, 573
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	8, 92, 125
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	3 cut(s)	127, 558, 632
MalI	GATC	2 cut(s)	116, 575
MboI	GATC	2 cut(s)	114, 573
MboII	GAAGA	2 cut(s)	70, 523
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	5 cut(s)	19, 56, 185, 394, 469
MluI	ACGCGT	1 cut(s)	625
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	110, 436
MmeI	TCCRAC	3 cut(s)	210, 299, 476
MnlI	CCTC	4 cut(s)	8, 45, 260, 450
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	1 cut(s)	466
MslI	CAYNNNNRTG	1 cut(s)	682
Msp20I	TGGCCA	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	390, 418
MunI	CAATTG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	390, 418
MvnI	CGCG	1 cut(s)	627
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	2 cut(s)	114, 573
NlaIII	CATG	2 cut(s)	267, 528
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	558
OliI	CACNNNNGTG	1 cut(s)	682
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	202
Pfl23II	CGTACG	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	417
PleI	GAGTC	2 cut(s)	109, 436
PpsI	GAGTC	2 cut(s)	109, 436
PsiI	TTATAA	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	388, 416
PspGI	CCWGG	2 cut(s)	388, 416
PspLI	CGTACG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	114, 573
SchI	GAGTC	2 cut(s)	110, 436
ScrFI	CCNGG	2 cut(s)	390, 418
SetI	ASST	9 cut(s)	126, 482, 522, 567, 588, 634, 639, 660, 696
SfaNI	GCATC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	682
Sse9I	AATT	5 cut(s)	19, 56, 185, 394, 469
SspMI	CTAG	3 cut(s)	8, 92, 125
StyD4I	CCNGG	2 cut(s)	388, 416
TaaI	ACNGT	4 cut(s)	219, 301, 317, 684
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	380
TasI	AATT	5 cut(s)	19, 56, 185, 394, 469
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	5 cut(s)	70, 158, 166, 215, 347
Van91I	CCANNNNNTGG	1 cut(s)	417
XapI	RAATTY	2 cut(s)	185, 469
XbaI	TCTAGA	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	684
XspI	CTAG	3 cut(s)	8, 92, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.