Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001889

Physical Location & Seq

Genomic Coordinates Forward (+)

61476770 .. 61478280

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAAGTACAGGGGGTATTACCAGATGGGGAGCAGGTAGGAGTAAAGAGACTCGCGAGAAGTTCAGGACAAGGACTAGAAGAATTCATGAATGAGATCACACTTATAGCTGAGCTTCAACATAGTAATCTTGTTCGGCTATTAGGTTGTTGCATTCAAGGAGAAGAAAAGATTCTGATTTACGAATTTATGGCAAATAAGAGCTTGGATGCCTTCCTATTTGACTCCACTAGAAGGAAGCAATTGGATTGGCAAACACGGGTAAACATCATTGAAGGAATTGCACAAGGACTTCTCTATCTTCATAAGCATTCTAGAGTTAGAGTCATACACAGAGATCTGAAAGCTAGTAACATTCTGCTTGATGAAAATATGAACCCTAAGATCTCAGACTTTGGAATGGCCAGAATTTTTGGACAGAATGAATCTATGGCAAATACAGTTAGAGTAGTCGGAACATACGGTTATATGTCTCCAGAATATGCCATGAGGGGCATTTTCTCTGAAAAGTCTGATGCCTGGGAATTGTGGAAACAAGGCCAGACCCTGGAGATAAAGGACACATCACTTGACTCTGGTTCCAAAGAGGAAGTTTTGAAATTTATTCAGGTTGGTCTCTTGTGTGTTCAAGAGTATGCAGAAGATAGAGCTACCATGTCAGAAGTAATATCAATGCTTACAAGTGATGCCACACCTTTGTCTGATCCAAAGCAGCCTGCATACACTATTTCAAGAAGTGAAGCAGCTGGGTCAACGCGTACGTTACCTGATAGAAGTTCAAATACGGCTTCAGCAAATAATGTATCCATTACTGTGATGGAAGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

277

Amino Acids

30.86

Weight (kDa)

5.4

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 175	6.5e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 174	9e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18470
fragaria_vesca	FvH4_1g04840 FvH4_4g02170
malus_domestica	MD02G1047300.v1.1 MD02G1047500.v1.1 MD02G1047600.v1.1 MD15G1186100.v1.1
prunus_persica	Prupe.7G230600_v2.0.a1 Prupe.7G230700_v2.0.a1
pyrus_communis	pycom02g03950 pycom02g03960 pycom02g03970 pycom02g03980 pycom15g16680
rosa_chinensis	RchiOBHm_Chr2g0090491 RchiOBHm_Chr4g0389481 RchiOBHm_Chr4g0389511
rosa_laevigata	RLG00000009978 RLG00000009979 RLG00000016118
rosa_multiflora	Rmu_co8294841.1_g000001 Rmu_co8421003.1_g000001 Rmu_sc0002498.1_g000012 Rmu_sc0002498.1_g000014 Rmu_sc0004514.1_g000025 Rmu_sc0015016.1_g000001 Rmu_sc0016342.1_g000001 Rmu_sc0023528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151090 Rroxscaffold_5G00335480
rosa_rugosa	Rorug02G0008500 Rorug03G0323400 Rorug03G0323500 Rorug03G0323600
rosa_samantha	Rh2AG053900 Rh2BG053400 Rh2CG055500 Rh2DG054100 Rh4AG027900 Rh4AG028000 Rh4BG021100 Rh4CG029900 Rh4DG021500
rosa_wichuraiana	Rw2G004310 Rw4G002030 Rw4G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccII	CGCG	2 cut(s)	56, 757
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	4 cut(s)	83, 185, 408, 599
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	2 cut(s)	9, 760
AfiI	CCNNNNNNNGG	2 cut(s)	234, 547
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	7 cut(s)	119, 158, 275, 598, 629, 732, 780
AjnI	CCWGG	2 cut(s)	518, 546
AluBI	AGCT	6 cut(s)	110, 115, 204, 347, 650, 746
AluI	AGCT	6 cut(s)	110, 115, 204, 347, 650, 746
Alw26I	GTCTC	3 cut(s)	43, 477, 620
AlwI	GGATC	1 cut(s)	698
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	2 cut(s)	402, 538
ApeKI	GCWGC	2 cut(s)	712, 743
ApoI	RAATTY	4 cut(s)	83, 185, 408, 599
Asp700I	GAANNNNTTC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	766, 798
BbvI	GCAGC	2 cut(s)	724, 755
BccI	CCATC	2 cut(s)	20, 811
BceAI	ACGGC	1 cut(s)	801
BciT130I	CCWGG	2 cut(s)	520, 548
BciVI	GTATCC	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	43, 477, 620
BfaI	CTAG	4 cut(s)	77, 231, 315, 348
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	814
BglII	AGATCT	2 cut(s)	337, 384
BisI	GCNGC	2 cut(s)	713, 744
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	714, 745
Bme1390I	CCNGG	2 cut(s)	520, 548
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	520, 548
BmsI	GCATC	3 cut(s)	199, 505, 676
BpmI	CTGGAG	2 cut(s)	459, 569
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	519, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 547
BseBI	CCWGG	2 cut(s)	520, 548
BseDI	CCNNGG	2 cut(s)	519, 546
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	234, 547
BseMII	CTCAG	2 cut(s)	102, 402
BseXI	GCAGC	2 cut(s)	724, 755
BseYI	CCCAGC	1 cut(s)	746
Bsh1236I	CGCG	2 cut(s)	56, 757
BshFI	GGCC	2 cut(s)	404, 540
BsiWI	CGTACG	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	234, 547
BsmAI	GTCTC	3 cut(s)	43, 477, 620
BsmI	GAATGC	2 cut(s)	153, 310
BsnI	GGCC	2 cut(s)	404, 540
Bso31I	GGTCTC	1 cut(s)	620
Bsp143I	GATC	4 cut(s)	96, 337, 384, 703
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp68I	TCGCGA	1 cut(s)	56
BspANI	GGCC	2 cut(s)	404, 540
BspCNI	CTCAG	2 cut(s)	103, 401
BspFNI	CGCG	2 cut(s)	56, 757
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	519, 546
BssMI	GATC	4 cut(s)	96, 337, 384, 703
Bst2UI	CCWGG	2 cut(s)	520, 548
Bst4CI	ACNGT	3 cut(s)	442, 464, 814
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	3 cut(s)	111, 381, 388
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	56, 757
BstKTI	GATC	4 cut(s)	99, 340, 387, 706
BstMAI	GTCTC	3 cut(s)	43, 477, 620
BstMBI	GATC	4 cut(s)	96, 337, 384, 703
BstNI	CCWGG	2 cut(s)	520, 548
BstSCI	CCNGG	2 cut(s)	518, 546
BstUI	CGCG	2 cut(s)	56, 757
BstV1I	GCAGC	2 cut(s)	724, 755
BstX2I	RGATCY	2 cut(s)	337, 384
BstYI	RGATCY	2 cut(s)	337, 384
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	404, 540
BtsCI	GGATG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	8, 759
CviAII	CATG	3 cut(s)	88, 487, 655
CviQI	GTAC	2 cut(s)	8, 759
DdeI	CTNAG	3 cut(s)	111, 381, 388
DpnI	GATC	4 cut(s)	98, 339, 386, 705
DpnII	GATC	4 cut(s)	96, 337, 384, 703
EaeI	YGGCCR	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	774
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	518, 546
FaeI	CATG	3 cut(s)	91, 490, 658
FatI	CATG	3 cut(s)	87, 486, 654
Fnu4HI	GCNGC	2 cut(s)	713, 744
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	713, 744
FspBI	CTAG	4 cut(s)	77, 231, 315, 348
GluI	GCNGC	2 cut(s)	713, 744
GsaI	CCCAGC	1 cut(s)	750
GsuI	CTGGAG	2 cut(s)	459, 569
HaeIII	GGCC	2 cut(s)	404, 540
Hin1II	CATG	3 cut(s)	91, 490, 658
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	6 cut(s)	51, 172, 224, 324, 425, 572
Hpy166II	GTNNAC	2 cut(s)	265, 753
Hpy188I	TCNGA	8 cut(s)	177, 342, 391, 455, 505, 514, 661, 703
Hpy188III	TCNNGA	7 cut(s)	55, 66, 88, 315, 476, 629, 732
Hpy8I	GTNNAC	2 cut(s)	265, 753
HpyAV	CCTTC	4 cut(s)	223, 228, 269, 815
HpyCH4III	ACNGT	3 cut(s)	442, 464, 814
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	5 cut(s)	4, 153, 284, 638, 719
HpyF3I	CTNAG	3 cut(s)	111, 381, 388
HpySE526I	ACGT	1 cut(s)	761
Hsp92II	CATG	3 cut(s)	91, 490, 658
Kzo9I	GATC	4 cut(s)	96, 337, 384, 703
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	724, 755
LweI	GCATC	3 cut(s)	199, 505, 676
MaeI	CTAG	4 cut(s)	77, 231, 315, 348
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	350, 762
MalI	GATC	4 cut(s)	98, 339, 386, 705
MboI	GATC	4 cut(s)	96, 337, 384, 703
MboII	GAAGA	4 cut(s)	92, 176, 293, 653
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	2 cut(s)	337, 384
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	7 cut(s)	83, 185, 242, 279, 408, 524, 599
MluI	ACGCGT	1 cut(s)	755
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	4 cut(s)	45, 218, 333, 566
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	2 cut(s)	483, 580
Mox20I	TGGCCA	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	520, 548
MunI	CAATTG	1 cut(s)	242
Mva1269I	GAATGC	2 cut(s)	153, 310
MvaI	CCWGG	2 cut(s)	520, 548
MvnI	CGCG	2 cut(s)	56, 757
NdeII	GATC	4 cut(s)	96, 337, 384, 703
NlaIII	CATG	3 cut(s)	91, 490, 658
NlaIV	GGNNCC	1 cut(s)	580
NruI	TCGCGA	1 cut(s)	56
PagI	TCATGA	1 cut(s)	87
PctI	GAATGC	2 cut(s)	153, 310
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	172, 425
Pfl23II	CGTACG	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	714, 745
PleI	GAGTC	4 cut(s)	45, 218, 332, 566
PpsI	GAGTC	4 cut(s)	45, 218, 332, 566
Psp6I	CCWGG	2 cut(s)	518, 546
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	518, 546
PspLI	CGTACG	1 cut(s)	758
PspN4I	GGNNCC	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	337, 384
PvuII	CAGCTG	1 cut(s)	746
RruI	TCGCGA	1 cut(s)	56
RsaI	GTAC	2 cut(s)	9, 760
RsaNI	GTAC	2 cut(s)	8, 759
RseI	CAYNNNNRTG	1 cut(s)	812
SatI	GCNGC	2 cut(s)	713, 744
Sau3AI	GATC	4 cut(s)	96, 337, 384, 703
SchI	GAGTC	4 cut(s)	45, 218, 333, 566
ScrFI	CCNGG	2 cut(s)	520, 548
SfaNI	GCATC	3 cut(s)	199, 505, 676
SmiMI	CAYNNNNRTG	1 cut(s)	812
Sse9I	AATT	7 cut(s)	83, 185, 242, 279, 408, 524, 599
SspMI	CTAG	4 cut(s)	77, 231, 315, 348
StyD4I	CCNGG	2 cut(s)	518, 546
TaaI	ACNGT	3 cut(s)	442, 464, 814
TaiI	ACGT	1 cut(s)	764
TasI	AATT	7 cut(s)	83, 185, 242, 279, 408, 524, 599
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	172, 425
TseI	GCWGC	2 cut(s)	712, 743
TspDTI	ATGAA	6 cut(s)	76, 104, 293, 381, 389, 438
Van91I	CCANNNNNTGG	1 cut(s)	547
XapI	RAATTY	4 cut(s)	83, 185, 408, 599
XbaI	TCTAGA	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	4 cut(s)	77, 231, 315, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.