AT5G27930

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
9957816 .. 9961374
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27930.1

Sequence Viewer

Length: 1122 bp
ATGGGACATTTCTCATCGATGTTCAATGGATTAGCTCGATCATTTTCTATAAAGAAAGTGAAGAACAACAATGGAAACTGCGACGCAAAGGAAGCTGCTGATGAGATGGCAAGCGAGGCTAAGAAAAAAGAATTGATTCTGAAATCCTCTGGTTATGTTAATGTACAAGGATCTAATAATTTAGCCTCTCTTTTCTCCAAACGCGGCGAAAAAGGCGTTAATCAGGATTGTGCACTCGTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATCTTCTGCGGGATATTCGATGGACACGGTCCATGGGGTCACTATGTAGCCAAACAAGTAAGAAACTCAATGCCTTTGTCGCTTCTTTGCAACTGGCAAAAGATTCTTGCTCAGGCCACTCTAGAACCCGAGCTCGACCTCGAAGGCTCTAATAAAAAAATCTCAAGATTCGACATATGGAAGCAATCCTATCTAAAAACGTGTGCAACGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTATAGCGGCACAACAGCTCTAACCATTGTGAGACAGGGTGAAGTTATTTATGTAGCAAATGTAGGCGATTCAAGAGCGGTACTAGCCATGGAGTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCTCACCCTCGATTTCAAACCGAATCTACCACAGGAGAAGGAGCGGATAATTGGCTGCAAAGGGCGGGTTTTCTGTCTAGATGATGAGCCGGGAGTCCATCGTGTGTGGCAGCCAGACGCAGAAACACCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTACTGTATTAAAGAGTATGGATTGGTCTCAGTCCCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAATCTTGGCCAGTGATGGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATTGTCTCCTCAACGGCTGAGCGGCCTAAGGCGGCTAAGCGATTAGTAGAGCAAGCGGTTCGGGCTTGGAAGAAAAAGAGACGAGGATACTCCATGGATGATATGTCAGTCGTCTGCCTCTTCCTCCATTCTTCTTCATCGTCATCTCTATCACAACATCATCATGCCATGACGATTTTAAAGTAA

Protein Analysis

373

Amino Acids

41.58

Weight (kDa)

6.86

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 130 - 333 9e-41 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccBSI CCGCTC 3 cut(s) 599, 688, 958
AccII CGCG 1 cut(s) 204
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 888
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 2 cut(s) 165, 603
AfiI CCNNNNNNNGG 1 cut(s) 897
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 4 cut(s) 25, 497, 594, 661
AluBI AGCT 7 cut(s) 35, 95, 403, 493, 539, 630, 646
AluI AGCT 7 cut(s) 35, 95, 403, 493, 539, 630, 646
Alw21I GWGCWC 2 cut(s) 235, 405
Alw26I GTCTC 5 cut(s) 547, 795, 835, 946, 1009
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 1 cut(s) 178
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 3 cut(s) 384, 888, 959
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 3 cut(s) 95, 699, 754
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 2 cut(s) 735, 774
AsuHPI GGTGA 3 cut(s) 494, 572, 640
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 963
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 890
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 405, 780
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 2 cut(s) 235, 405
BbvI GCAGC 3 cut(s) 82, 686, 766
BccI CCATC 4 cut(s) 100, 284, 750, 890
BceAI ACGGC 1 cut(s) 966
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciVI GTATCC 1 cut(s) 1016
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 2 cut(s) 735, 774
BcoDI GTCTC 5 cut(s) 547, 795, 835, 946, 1009
BfaI CTAG 3 cut(s) 392, 605, 722
BfmI CTRYAG 2 cut(s) 523, 930
BfuI GTATCC 1 cut(s) 1016
BisI GCNGC 7 cut(s) 96, 205, 529, 700, 755, 959, 969
BlpI GCTNAGC 2 cut(s) 954, 972
BlsI GCNGC 7 cut(s) 97, 206, 530, 701, 756, 960, 970
Bme1390I CCNGG 2 cut(s) 735, 774
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 735, 774
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 926, 958
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 2 cut(s) 954, 972
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 2 cut(s) 735, 774
Bsa29I ATCGAT 2 cut(s) 17, 513
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 4 cut(s) 302, 609, 773, 1029
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse1I ACTGG 2 cut(s) 368, 891
Bse21I CCTNAGG 1 cut(s) 963
Bse3DI GCAATG 1 cut(s) 789
BseCI ATCGAT 2 cut(s) 17, 513
BseDI CCNNGG 4 cut(s) 302, 609, 773, 1029
BseGI GGATG 3 cut(s) 625, 913, 1039
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 395, 846, 945
BseNI ACTGG 2 cut(s) 368, 891
BseRI GAGGAG 1 cut(s) 934
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 82, 686, 766
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 386, 890, 961
BshNI GGYRCC 1 cut(s) 255
BshVI ATCGAT 2 cut(s) 17, 513
BsiHKAI GWGCWC 2 cut(s) 235, 405
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 734, 773
BslFI GGGAC 2 cut(s) 18, 821
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 5 cut(s) 547, 795, 835, 946, 1009
BsmBI CGTCTC 1 cut(s) 1009
BsmFI GGGAC 2 cut(s) 18, 821
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 3 cut(s) 386, 890, 961
Bso31I GGTCTC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 3 cut(s) 235, 405, 780
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 6 cut(s) 38, 170, 270, 484, 510, 912
Bsp1720I GCTNAGC 2 cut(s) 954, 972
Bsp19I CCATGG 3 cut(s) 302, 609, 1029
BspANI GGCC 3 cut(s) 386, 890, 961
BspCNI CTCAG 3 cut(s) 394, 845, 946
BspDI ATCGAT 2 cut(s) 17, 513
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 835
BsrBI CCGCTC 3 cut(s) 599, 688, 958
BsrDI GCAATG 1 cut(s) 789
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 2 cut(s) 368, 891
BssECI CCNNGG 4 cut(s) 302, 609, 773, 1029
BssMI GATC 6 cut(s) 38, 170, 270, 484, 510, 912
BssT1I CCWWGG 3 cut(s) 302, 609, 1029
Bst4CI ACNGT 3 cut(s) 299, 481, 809
Bst6I CTCTTC 1 cut(s) 1061
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 112, 780, 990
BstDEI CTNAG 6 cut(s) 120, 381, 832, 954, 963, 972
BstDSI CCRYGG 3 cut(s) 302, 609, 1029
BstF5I GGATG 3 cut(s) 625, 913, 1039
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 6 cut(s) 41, 173, 273, 487, 513, 915
BstMAI GTCTC 5 cut(s) 547, 795, 835, 946, 1009
BstMBI GATC 6 cut(s) 38, 170, 270, 484, 510, 912
BstMWI GCNNNNNNNGC 6 cut(s) 92, 116, 213, 349, 605, 998
BstSCI CCNGG 2 cut(s) 733, 772
BstSFI CTRYAG 2 cut(s) 523, 930
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 82, 686, 766
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 2 cut(s) 17, 513
Bsu36I CCTNAGG 1 cut(s) 963
BsuI GTATCC 1 cut(s) 1016
BsuRI GGCC 3 cut(s) 386, 890, 961
BsuTUI ATCGAT 2 cut(s) 17, 513
BtgI CCRYGG 3 cut(s) 302, 609, 1029
BtsCI GGATG 3 cut(s) 625, 913, 1039
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 3 cut(s) 112, 780, 990
CaiI CAGNNNCTG 1 cut(s) 839
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 2 cut(s) 17, 513
CseI GACGC 2 cut(s) 92, 770
Csp6I GTAC 2 cut(s) 164, 602
CviAII CATG 6 cut(s) 268, 303, 610, 1030, 1100, 1105
CviQI GTAC 2 cut(s) 164, 602
DdeI CTNAG 6 cut(s) 120, 381, 832, 954, 963, 972
DpnI GATC 6 cut(s) 40, 172, 272, 486, 512, 914
DpnII GATC 6 cut(s) 38, 170, 270, 484, 510, 912
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 1061
EarI CTCTTC 1 cut(s) 1061
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 3 cut(s) 302, 609, 1029
Eco24I GRGCYC 2 cut(s) 405, 780
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 861
Eco81I CCTNAGG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 403
EcoT14I CCWWGG 3 cut(s) 302, 609, 1029
EcoT38I GRGCYC 2 cut(s) 405, 780
ErhI CCWWGG 3 cut(s) 302, 609, 1029
Esp3I CGTCTC 1 cut(s) 1009
FaeI CATG 6 cut(s) 271, 306, 613, 1033, 1103, 1108
FaqI GGGAC 2 cut(s) 18, 821
FatI CATG 6 cut(s) 267, 302, 609, 1029, 1099, 1104
FauI CCCGC 2 cut(s) 272, 702
FauNDI CATATG 1 cut(s) 446
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 7 cut(s) 96, 205, 529, 700, 755, 959, 969
FokI GGATG 3 cut(s) 632, 920, 1046
FriOI GRGCYC 2 cut(s) 405, 780
Fsp4HI GCNGC 7 cut(s) 96, 205, 529, 700, 755, 959, 969
FspBI CTAG 3 cut(s) 392, 605, 722
GluI GCNGC 7 cut(s) 96, 205, 529, 700, 755, 959, 969
HaeIII GGCC 3 cut(s) 386, 890, 961
HapII CCGG 2 cut(s) 734, 773
HgaI GACGC 2 cut(s) 92, 770
Hin1II CATG 6 cut(s) 271, 306, 613, 1033, 1103, 1108
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 8 cut(s) 136, 373, 438, 515, 590, 614, 667, 738
HpaII CCGG 2 cut(s) 734, 773
HphI GGTGA 3 cut(s) 494, 572, 640
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 141, 619, 800
Hpy188III TCNNGA 7 cut(s) 224, 392, 435, 488, 594, 722, 789
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 407, 676
HpyCH4III ACNGT 3 cut(s) 299, 481, 809
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 233, 360, 476, 702
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 116, 213, 349, 605, 998
HpyF3I CTNAG 6 cut(s) 120, 381, 832, 954, 963, 972
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 6 cut(s) 271, 306, 613, 1033, 1103, 1108
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 6 cut(s) 38, 170, 270, 484, 510, 912
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 3 cut(s) 82, 686, 766
MaeI CTAG 3 cut(s) 392, 605, 722
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 308, 844
MalI GATC 6 cut(s) 40, 172, 272, 486, 512, 914
MbiI CCGCTC 3 cut(s) 599, 688, 958
MboI GATC 6 cut(s) 38, 170, 270, 484, 510, 912
MboII GAAGA 7 cut(s) 73, 265, 275, 1018, 1048, 1059, 1062
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 3 cut(s) 235, 405, 780
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 3 cut(s) 131, 178, 693
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 2 cut(s) 623, 747
MmeI TCCRAC 1 cut(s) 597
Mox20I TGGCCA 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 135
MscI TGGCCA 1 cut(s) 890
MseI TTAA 4 cut(s) 159, 219, 813, 1115
MslI CAYNNNNRTG 1 cut(s) 1098
Msp20I TGGCCA 1 cut(s) 890
MspI CCGG 2 cut(s) 734, 773
MspR9I CCNGG 2 cut(s) 735, 774
Mva1269I GAATGC 1 cut(s) 794
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 6 cut(s) 92, 116, 213, 349, 605, 998
NciI CCSGG 2 cut(s) 735, 774
NcoI CCATGG 3 cut(s) 302, 609, 1029
NdeI CATATG 1 cut(s) 446
NdeII GATC 6 cut(s) 38, 170, 270, 484, 510, 912
NlaIII CATG 6 cut(s) 271, 306, 613, 1033, 1103, 1108
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 308, 844
PctI GAATGC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 6 cut(s) 136, 373, 438, 515, 590, 667
PflFI GACNNNGTC 1 cut(s) 297
PkrI GCNGC 7 cut(s) 97, 206, 530, 701, 756, 960, 970
PleI GAGTC 2 cut(s) 622, 746
PpsI GAGTC 2 cut(s) 622, 746
Psp124BI GAGCTC 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 297
RsaI GTAC 2 cut(s) 165, 603
RsaNI GTAC 2 cut(s) 164, 602
RseI CAYNNNNRTG 1 cut(s) 1098
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 159, 219, 813, 1115
SatI GCNGC 7 cut(s) 96, 205, 529, 700, 755, 959, 969
Sau3AI GATC 6 cut(s) 38, 170, 270, 484, 510, 912
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 623, 747
ScrFI CCNGG 2 cut(s) 735, 774
SduI GDGCHC 3 cut(s) 235, 405, 780
SetI ASST 9 cut(s) 37, 97, 405, 411, 473, 495, 541, 632, 648
SfcI CTRYAG 2 cut(s) 523, 930
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 1098
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 3 cut(s) 131, 178, 693
SspMI CTAG 3 cut(s) 392, 605, 722
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 733, 772
StyI CCWWGG 3 cut(s) 302, 609, 1029
TaaI ACNGT 3 cut(s) 299, 481, 809
TaiI ACGT 1 cut(s) 473
TaqI TCGA 8 cut(s) 17, 37, 288, 405, 411, 441, 513, 654
TasI AATT 3 cut(s) 131, 178, 693
TatI WGTACW 1 cut(s) 163
TauI GCSGC 4 cut(s) 207, 531, 961, 971
TfiI GAWTC 6 cut(s) 136, 373, 438, 515, 590, 667
Tru1I TTAA 4 cut(s) 159, 219, 813, 1115
Tru9I TTAA 4 cut(s) 159, 219, 813, 1115
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 308, 844
TseI GCWGC 3 cut(s) 95, 699, 754
Tsp45I GTSAC 2 cut(s) 308, 844
TspDTI ATGAA 2 cut(s) 868, 1062
TspRI CASTG 1 cut(s) 898
Tth111I GACNNNGTC 1 cut(s) 297
VneI GTGCAC 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 299
XbaI TCTAGA 2 cut(s) 391, 721
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 3 cut(s) 392, 605, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.