Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Forward (+)

12803860 .. 12806766

Gene Structure 2907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1162500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTGTTATTTCCATCTCTTCTTGAGGGGTTGGGAAGAACGAAATCGGGCAAGAAAACGAAGAATTGCCCTAGCGATGTTGCGAGGAAAACTGCAAAAGCATTGGAAAAGGAAGCCAAAAAGAATGAACGCGTTTCGAGTTCTTCCGGCATGGTTATGTCTGAGAGGTCCAACACTCTCTCCTCCGTTTGCTCCAAGAGAGGCCGGAAGGGGATCAATCAGGATTGCTTAACCATTTGGAAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATATTTGATGGACATGGCCAATGGGGTCATCTTGTTAGCAAAAGGGTCAGGGAATCCTTGCCTGCTTCCTTGTTGTGCAATTGGCAAGAGACTCTCACTTCAACATCACTTGACCTGGATTTTGAAATGGAGATGGACAGAAACCTCCATGGTTTCGATATGTGGAAGCAATCCTTTCTGAAAACCTATGCTGCCATTGACACGGAGCTCAAGCATTCTTCCAAACTCGATTCCTACTGGAGTGGCACTACCGCACTGACAATTGTTAAGCAGGGTGAAAATCTCATCGTTGCAAACATCGGTGATTCTCGGGCAGTTTTAGCCTCCGTTTCTGAAGATGGCAGTTTGGCAGCCCTCCAGCTTACAGTGGACTTTAAACCCAACTTACCTCAGGAGGCTGAGCGAATAAATAGCTCGAACGGGCGAGTGTTTTGCTTACAAGATGAACCAAGGACTTATAGGGTGTGGATGCCAAATGGTAAAACACCAGGACTGGCAATATCAAGAGCATTTGGTGACTACTGTGTGAAGGACTTCGGGCTCATCTCAATGCCTGACGTGACTCAAAGACGCATAACCAGCAGCGACCAGTTTGTCATTCTAGCAACAGATGGGGTATGGGATGTCATCTCCAACCAAGAAGCTGTTGAAATAGTTTCCTCATGTCCAGATAGGAAAAAAACAGCTAAAAGACTGGTGGGATGTGCCTCTCTTGCATGGAAGACTAAGAAACGAGGCATCGCAATGGACGACATCTCAGCTATTTGCCTATTCTTTCACGCTTCATCCCCGCCACAAGCCAACCATTTGGTCTCAAAATACTCTGGAGTGGAGGAATCGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

375

Amino Acids

41.34

Weight (kDa)

8.41

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	65 - 323	1.3e-41	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	872
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	531, 1070
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	633
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	381, 404, 929
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	393, 766
AluBI	AGCT	6 cut(s)	487, 640, 693, 923, 965, 1040
AluI	AGCT	6 cut(s)	487, 640, 693, 923, 965, 1040
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	362, 1096
AlwI	GGATC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	2 cut(s)	202, 295
ApeKI	GCWGC	3 cut(s)	470, 629, 861
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	566, 593, 806
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	669
BalI	TGGCCA	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	489, 822
BbsI	GAAGAC	2 cut(s)	267, 1007
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	457, 641, 873
BccI	CCATC	5 cut(s)	22, 281, 406, 611, 884
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	2 cut(s)	395, 768
BcoDI	GTCTC	2 cut(s)	362, 1096
BfaI	CTAG	2 cut(s)	72, 881
BisI	GCNGC	3 cut(s)	471, 630, 862
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	3 cut(s)	472, 631, 863
Bme1390I	CCNGG	2 cut(s)	395, 768
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	588
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	395, 768
BmsI	GCATC	3 cut(s)	242, 738, 1026
BpiI	GAAGAC	2 cut(s)	267, 1007
BpmI	CTGGAG	3 cut(s)	538, 620, 1125
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	44, 473
BsaI	GGTCTC	1 cut(s)	1096
BsaJI	CCNNGG	2 cut(s)	427, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	4 cut(s)	521, 777, 868, 978
Bse21I	CCTNAGG	1 cut(s)	669
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	2 cut(s)	395, 768
BseDI	CCNNGG	2 cut(s)	427, 728
BseGI	GGATG	5 cut(s)	257, 753, 907, 986, 1064
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	4 cut(s)	153, 669, 683, 1050
BseNI	ACTGG	4 cut(s)	521, 777, 868, 978
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	457, 641, 873
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	204, 297
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	2 cut(s)	147, 205
BsmAI	GTCTC	2 cut(s)	362, 1096
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	204, 297
Bso31I	GGTCTC	1 cut(s)	1096
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	489, 822
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	678
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	2 cut(s)	531, 1070
BspANI	GGCC	2 cut(s)	204, 297
BspCNI	CTCAG	4 cut(s)	154, 670, 682, 1049
BspFNI	CGCG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	1096
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	521, 777, 868, 978
BssECI	CCNNGG	2 cut(s)	427, 728
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	427, 728
Bst2UI	CCWGG	2 cut(s)	395, 768
Bst4CI	ACNGT	2 cut(s)	646, 803
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	162, 669, 678, 1005, 1036
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	5 cut(s)	257, 753, 907, 986, 1064
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	362, 1096
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 858, 992
BstNI	CCWGG	2 cut(s)	395, 768
BstSCI	CCNGG	2 cut(s)	393, 766
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	457, 641, 873
BstV2I	GAAGAC	2 cut(s)	267, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	1087
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	204, 297
BtgI	CCRYGG	1 cut(s)	427
BtgZI	GCGATG	2 cut(s)	90, 1003
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	5 cut(s)	257, 753, 907, 986, 1064
BtsIMutI	CAGTG	2 cut(s)	533, 651
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	858
CviAII	CATG	6 cut(s)	151, 265, 293, 428, 942, 996
DdeI	CTNAG	5 cut(s)	162, 669, 678, 1005, 1036
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DraI	TTTAAA	1 cut(s)	655
DrdI	GACNNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	427, 728
Eco24I	GRGCYC	2 cut(s)	489, 822
Eco31I	GGTCTC	1 cut(s)	1096
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	633
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	393, 766
EcoT14I	CCWWGG	2 cut(s)	427, 728
EcoT38I	GRGCYC	2 cut(s)	489, 822
ErhI	CCWWGG	2 cut(s)	427, 728
FaeI	CATG	6 cut(s)	154, 268, 296, 431, 945, 999
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	6 cut(s)	150, 264, 292, 427, 941, 995
FauI	CCCGC	1 cut(s)	1077
Fnu4HI	GCNGC	3 cut(s)	471, 630, 862
FokI	GGATG	5 cut(s)	264, 760, 914, 993, 1051
FriOI	GRGCYC	2 cut(s)	489, 822
Fsp4HI	GCNGC	3 cut(s)	471, 630, 862
FspBI	CTAG	2 cut(s)	72, 881
GluI	GCNGC	3 cut(s)	471, 630, 862
GsuI	CTGGAG	3 cut(s)	538, 620, 1125
HaeIII	GGCC	2 cut(s)	204, 297
HapII	CCGG	2 cut(s)	147, 205
HgaI	GACGC	1 cut(s)	858
Hin1II	CATG	6 cut(s)	154, 268, 296, 431, 945, 999
HinfI	GANTC	6 cut(s)	332, 370, 509, 584, 841, 1115
HpaII	CCGG	2 cut(s)	147, 205
HphI	GGTGA	3 cut(s)	566, 593, 806
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	3 cut(s)	163, 459, 613
Hpy188III	TCNNGA	6 cut(s)	23, 221, 671, 783, 947, 1104
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	3 cut(s)	202, 235, 802
HpyCH4III	ACNGT	2 cut(s)	646, 803
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	4 cut(s)	95, 357, 572, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 858, 992
HpyF3I	CTNAG	5 cut(s)	162, 669, 678, 1005, 1036
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	6 cut(s)	154, 268, 296, 431, 945, 999
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	197, 484
Lsp1109I	GCAGC	3 cut(s)	457, 641, 873
LweI	GCATC	3 cut(s)	242, 738, 1026
MaeI	CTAG	2 cut(s)	72, 881
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	794, 838
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	8 cut(s)	11, 48, 73, 135, 272, 489, 626, 1012
MfeI	CAATTG	2 cut(s)	358, 540
MhlI	GDGCHC	2 cut(s)	489, 822
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	4 cut(s)	64, 245, 358, 540
MluI	ACGCGT	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	364, 835
MmeI	TCCRAC	2 cut(s)	195, 936
Mox20I	TGGCCA	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	230, 546, 654
MslI	CAYNNNNRTG	3 cut(s)	155, 827, 1022
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	2 cut(s)	147, 205
MspR9I	CCNGG	2 cut(s)	395, 768
MunI	CAATTG	2 cut(s)	358, 540
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	395, 768
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	599, 858, 992
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	6 cut(s)	154, 268, 296, 431, 945, 999
NmuCI	GTSAC	2 cut(s)	794, 838
PcsI	WCGNNNNNNNCGW	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	332, 509, 584, 1115
PkrI	GCNGC	3 cut(s)	472, 631, 863
PleI	GAGTC	2 cut(s)	364, 835
PpsI	GAGTC	2 cut(s)	364, 835
Psp124BI	GAGCTC	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	393, 766
PspGI	CCWGG	2 cut(s)	393, 766
PspPI	GGNCC	1 cut(s)	168
RseI	CAYNNNNRTG	3 cut(s)	155, 827, 1022
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	230, 546, 654
SatI	GCNGC	3 cut(s)	471, 630, 862
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	364, 835
ScrFI	CCNGG	2 cut(s)	395, 768
SduI	GDGCHC	2 cut(s)	489, 822
SfaNI	GCATC	3 cut(s)	242, 738, 1026
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	3 cut(s)	155, 827, 1022
SmlI	CTYRAG	2 cut(s)	23, 488
SmoI	CTYRAG	2 cut(s)	23, 488
Sse9I	AATT	4 cut(s)	64, 245, 358, 540
SsiI	CCGC	2 cut(s)	531, 1070
SspMI	CTAG	2 cut(s)	72, 881
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	393, 766
StyI	CCWWGG	2 cut(s)	427, 728
TaaI	ACNGT	2 cut(s)	646, 803
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	4 cut(s)	137, 435, 507, 695
TasI	AATT	4 cut(s)	64, 245, 358, 540
TfiI	GAWTC	4 cut(s)	332, 509, 584, 1115
Tru1I	TTAA	3 cut(s)	230, 546, 654
Tru9I	TTAA	3 cut(s)	230, 546, 654
TscAI	CASTG	2 cut(s)	540, 651
TseFI	GTSAC	2 cut(s)	794, 838
TseI	GCWGC	3 cut(s)	470, 629, 861
Tsp45I	GTSAC	2 cut(s)	794, 838
TspDTI	ATGAA	3 cut(s)	141, 738, 1053
TspGWI	ACGGA	3 cut(s)	175, 497, 595
TspRI	CASTG	2 cut(s)	540, 651
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	2 cut(s)	72, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.