Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Forward (+)

6031064 .. 6032766

Gene Structure 1703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGGCACTTATCATCCATGTTTAGTGGACTTGCAAGATCACTAGCATTGAAGAAGGGGAAGAATAGTTCTGGATGTAAATGTAATGTAAGAGAAGCTGCAGAGGCAATGGCAAAGGAGGCGAAGAAAAATGACTTGATACTCCGAACTTCTGGAACTGTCAATGTTGATGGCTCAAATAATTTGGCTTCAGTTTTTAGCAAGAGAGGCAACAAAGGAGTCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGCCAACAAGATATGATGTTTTGTGGGATCTTTGATGGGCATGGACAATGGGGACATTTTGTGGCGAAAAGGATCAGAGACACAATGCCGCCCTCGTTGTTGTGTAACTGGCAAGAGACCCTAGCTCAAACTTCACTAGATCCAGACTTGAAAGAGTTGGACTTGGAACCGGATAAAAAGTATGATCAGAGGTTTAACATATGGAAGCACTCCTATATAAAAACTTGTGCGGCTGTTGATCAAGAGCTTGAGCAAGATCGCAAAATCAATTCCTTTTACAGCGGTACCACTGGTCTCACCATTGTCAGACAGGGTGATCTTATTGTCATAGCAAATGTTGGTGATTCTCGAGCTGTTTTGGGTACAACTTTAGAAGATGGAAGCTTGGCGGCAGTTCAGCTTACTGTTGATTTCAAGCCCAATTTACCTGAGGAGGCTGAGAGAATAACTCAAAGAAATGGGAGAGTTTTCAGTTTAGATGATGAAACAGGAGTTCATAGGTTGTGGCTACCCTATGAAGAATCACCAGGACTAGCAATGTCTAGGGCATTCGGAGACTACTGCGTCAAGGATTTTGGACTTATTTCCGAGCCTGAAGTTACTCACAGAAACATAACAAGCAGAGATCAATTTGTTGTGCTAGCAACTGATGGGGTATGGGATGTGATTTCGAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAAAAGTGTGCCAAGCGACTGGTGGAATGTGCAGCTGCAGCATGGAGGAAGAAGAGGAGGGGTTATGCAATGGATGACATTTCCGCTATTTGCCTCTTCTTTCACTCTTCCTCTTTGTCTCAGCAAGTTCACCCCATTAGTACACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

374

Amino Acids

41.59

Weight (kDa)

5.84

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	87 - 337	5.4e-41	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	258, 542
AciI	CCGC	5 cut(s)	347, 488, 540, 647, 1056
AclWI	GGATC	3 cut(s)	293, 338, 392
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	174, 873
AfaI	GTAC	3 cut(s)	544, 622, 1114
AgsI	TTSAA	4 cut(s)	52, 409, 673, 960
AjnI	CCWGG	2 cut(s)	225, 784
AloI	GAACNNNNNNTCC	2 cut(s)	52, 84
AluBI	AGCT	7 cut(s)	98, 383, 505, 611, 642, 658, 1007
AluI	AGCT	7 cut(s)	98, 383, 505, 611, 642, 658, 1007
Alw26I	GTCTC	5 cut(s)	330, 368, 557, 807, 1095
AlwI	GGATC	3 cut(s)	293, 338, 392
Ama87I	CYCGRG	1 cut(s)	606
ApeKI	GCWGC	5 cut(s)	98, 234, 1004, 1007, 1010
ApoI	RAATTY	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	5 cut(s)	547, 584, 611, 774, 1094
AsuII	TTCGAA	1 cut(s)	929
AsuNHI	GCTAGC	1 cut(s)	898
AvaI	CYCGRG	1 cut(s)	606
AxyI	CCTNAGG	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BanI	GGYRCC	2 cut(s)	258, 542
BbvI	GCAGC	5 cut(s)	85, 221, 994, 1016, 1022
BccI	CCATC	4 cut(s)	164, 287, 629, 902
BciT130I	CCWGG	2 cut(s)	227, 786
BclI	TGATCA	2 cut(s)	442, 496
BcoDI	GTCTC	5 cut(s)	330, 368, 557, 807, 1095
BfaI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
BfmI	CTRYAG	2 cut(s)	99, 1008
BisI	GCNGC	8 cut(s)	99, 235, 347, 489, 648, 1005, 1008, 1011
BlsI	GCNGC	8 cut(s)	100, 236, 348, 490, 649, 1006, 1009, 1012
Bme1390I	CCNGG	2 cut(s)	227, 786
BmeT110I	CYCGRG	1 cut(s)	606
BmiI	GGNNCC	3 cut(s)	260, 426, 544
BmrFI	CCNGG	2 cut(s)	227, 786
BmtI	GCTAGC	1 cut(s)	902
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
Bpu14I	TTCGAA	1 cut(s)	929
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	2 cut(s)	368, 557
BsaWI	WCCGGW	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	371, 553, 996
Bse21I	CCTNAGG	1 cut(s)	687
Bse3DI	GCAATG	3 cut(s)	114, 801, 1047
BseBI	CCWGG	2 cut(s)	227, 786
BseGI	GGATG	4 cut(s)	14, 80, 925, 1051
BseMI	GCAATG	3 cut(s)	114, 801, 1047
BseMII	CTCAG	3 cut(s)	678, 687, 1106
BseNI	ACTGG	3 cut(s)	371, 553, 996
BseRI	GAGGAG	2 cut(s)	704, 1042
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	5 cut(s)	85, 221, 994, 1016, 1022
BsgI	GTGCAG	1 cut(s)	1023
BshNI	GGYRCC	2 cut(s)	258, 542
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	5 cut(s)	330, 368, 557, 807, 1095
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	806
Bso31I	GGTCTC	2 cut(s)	368, 557
BsoBI	CYCGRG	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	929
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
BspACI	CCGC	5 cut(s)	347, 488, 540, 647, 1056
BspCNI	CTCAG	3 cut(s)	679, 688, 1105
BspLI	GGNNCC	3 cut(s)	260, 426, 544
BspMAI	CTGCAG	2 cut(s)	103, 1012
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	3 cut(s)	293, 338, 392
BspT104I	TTCGAA	1 cut(s)	929
BspT107I	GGYRCC	2 cut(s)	258, 542
BspTNI	GGTCTC	2 cut(s)	368, 557
BsrDI	GCAATG	3 cut(s)	114, 801, 1047
BsrI	ACTGG	3 cut(s)	371, 553, 996
BssMI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
Bst2UI	CCWGG	2 cut(s)	227, 786
Bst4CI	ACNGT	2 cut(s)	160, 664
Bst6I	CTCTTC	3 cut(s)	1019, 1073, 1084
BstBI	TTCGAA	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	3 cut(s)	687, 696, 1092
BstF5I	GGATG	4 cut(s)	14, 80, 925, 1051
BstKTI	GATC	9 cut(s)	41, 288, 333, 400, 445, 499, 517, 577, 886
BstMAI	GTCTC	5 cut(s)	330, 368, 557, 807, 1095
BstMBI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1010
BstNI	CCWGG	2 cut(s)	227, 786
BstSCI	CCNGG	2 cut(s)	225, 784
BstSFI	CTRYAG	2 cut(s)	99, 1008
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	5 cut(s)	85, 221, 994, 1016, 1022
BstX2I	RGATCY	2 cut(s)	285, 397
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	2 cut(s)	285, 397
Bsu36I	CCTNAGG	1 cut(s)	687
BtsCI	GGATG	4 cut(s)	14, 80, 925, 1051
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	546, 948
Cac8I	GCNNGC	1 cut(s)	900
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	3 cut(s)	543, 621, 1113
CviAII	CATG	3 cut(s)	19, 299, 1014
CviQI	GTAC	3 cut(s)	543, 621, 1113
DdeI	CTNAG	3 cut(s)	687, 696, 1092
DpnI	GATC	9 cut(s)	40, 287, 332, 399, 444, 498, 516, 576, 885
DpnII	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
Eam1104I	CTCTTC	3 cut(s)	1019, 1073, 1084
EarI	CTCTTC	3 cut(s)	1019, 1073, 1084
Eco31I	GGTCTC	2 cut(s)	368, 557
Eco57I	CTGAAG	2 cut(s)	174, 873
Eco81I	CCTNAGG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	225, 784
FaeI	CATG	3 cut(s)	22, 302, 1017
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	3 cut(s)	18, 298, 1013
FauNDI	CATATG	1 cut(s)	458
FbaI	TGATCA	2 cut(s)	442, 496
Fnu4HI	GCNGC	8 cut(s)	99, 235, 347, 489, 648, 1005, 1008, 1011
FokI	GGATG	3 cut(s)	87, 932, 1058
Fsp4HI	GCNGC	8 cut(s)	99, 235, 347, 489, 648, 1005, 1008, 1011
FspBI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
GluI	GCNGC	8 cut(s)	99, 235, 347, 489, 648, 1005, 1008, 1011
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	811
Hin1II	CATG	3 cut(s)	22, 302, 1017
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	219, 602, 779
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	5 cut(s)	547, 584, 611, 774, 1094
Hpy166II	GTNNAC	4 cut(s)	29, 223, 1102, 1115
Hpy188I	TCNGA	6 cut(s)	146, 335, 447, 566, 812, 847
Hpy188III	TCNNGA	5 cut(s)	72, 153, 401, 500, 606
Hpy8I	GTNNAC	4 cut(s)	29, 223, 1102, 1115
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	160, 664
HpyCH4V	TGCA	6 cut(s)	35, 101, 237, 1004, 1010, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1010
HpyF3I	CTNAG	3 cut(s)	687, 696, 1092
Hsp92II	CATG	3 cut(s)	22, 302, 1017
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	2 cut(s)	442, 496
Kzo9I	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
Lsp1109I	GCAGC	5 cut(s)	85, 221, 994, 1016, 1022
MaeI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
MaeIII	GTNAC	2 cut(s)	362, 856
MalI	GATC	9 cut(s)	40, 287, 332, 399, 444, 498, 516, 576, 885
MboI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
MflI	RGATCY	2 cut(s)	285, 397
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	6 cut(s)	181, 251, 526, 679, 887, 948
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	396
MseI	TTAA	2 cut(s)	453, 1119
MspA1I	CMGCKG	2 cut(s)	540, 1007
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	227, 786
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	2 cut(s)	227, 786
MwoI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1010
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	3 cut(s)	22, 302, 1017
NlaIV	GGNNCC	3 cut(s)	260, 426, 544
NspV	TTCGAA	1 cut(s)	929
PaeR7I	CTCGAG	1 cut(s)	606
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	602, 779
PkrI	GCNGC	8 cut(s)	100, 236, 348, 490, 649, 1006, 1009, 1012
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	225, 784
PspGI	CCWGG	2 cut(s)	225, 784
PspN4I	GGNNCC	3 cut(s)	260, 426, 544
PstI	CTGCAG	2 cut(s)	103, 1012
PsuI	RGATCY	2 cut(s)	285, 397
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	3 cut(s)	544, 622, 1114
RsaNI	GTAC	3 cut(s)	543, 621, 1113
SaqAI	TTAA	2 cut(s)	453, 1119
SatI	GCNGC	8 cut(s)	99, 235, 347, 489, 648, 1005, 1008, 1011
Sau3AI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	227, 786
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	2 cut(s)	99, 1008
Sfr274I	CTCGAG	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	506, 606
SmoI	CTYRAG	2 cut(s)	506, 606
Sse9I	AATT	6 cut(s)	181, 251, 526, 679, 887, 948
SsiI	CCGC	5 cut(s)	347, 488, 540, 647, 1056
SspMI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
StyD4I	CCNGG	2 cut(s)	225, 784
TaaI	ACNGT	2 cut(s)	160, 664
TaqI	TCGA	2 cut(s)	607, 929
TasI	AATT	6 cut(s)	181, 251, 526, 679, 887, 948
TatI	WGTACW	1 cut(s)	1112
TauI	GCSGC	3 cut(s)	349, 491, 650
TfiI	GAWTC	2 cut(s)	602, 779
Tru1I	TTAA	2 cut(s)	453, 1119
Tru9I	TTAA	2 cut(s)	453, 1119
TscAI	CASTG	2 cut(s)	553, 948
TseI	GCWGC	5 cut(s)	98, 234, 1004, 1007, 1010
TspDTI	ATGAA	3 cut(s)	743, 756, 789
TspRI	CASTG	2 cut(s)	553, 948
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	991
XhoI	CTCGAG	1 cut(s)	606
XspI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.