Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Forward (+)

5953930 .. 5957657

Gene Structure 3728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGCACTTATCATCCATGTTCAGTGGACTTGCAAGATCACTAGCATTGAAGAAGGGGAAGAATAGTTCTGGATGTAAATGTAATGTAAGAGAAGCTGCAGAGGCAATGGCAAAGGAGGCGAAGAAAAATGACTTGATACTCCGAACTTCTGGAACTGTCAATGTTGATGGCTCAAATAATTTGGCTTCAGTTTTTAGCAAGAGAGGCAACAAAGGAGTCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGCCAACAAGATATGATGTTTTGTGGGATCTTTGATGGGCATGGACAATGGGGACATTTTGTGGCGAAAAGGATCAGAGACACAATGCCGCCCTCGTTGTTGTGTAACTGGCAAGAGACACTAGCTCAAACTTCACTAGATCCAGACTTGAAAGAGTTGGACTTGGAACCGGATAAAAAGTATGATCAGAGGTTTAACATATGGAAGCACTCCTATATAAAAACTTGTGCGGCTGTTGATCAAGAGCTTGAGCAAGATCGCAAAATCAATTCCTTTTACAGCGGTACCACTGGTCTCACCATTGTCAGACAGGGTGATCTTATTGTCATAGCAAATGTTGGTGATTCTCGAGCTGTTTTGGGTACAACTTTAGAAGATGGAAGCTTGGCGGCAGTTCAGCTTACTGTTGATTTCAAGCCCAATTTACCTGAGGAGGCTGAGAGAATAACTCAAAGAAATGGGAGAGTTTTCAGTTTAGATGATGAAACAGGAGTTCATAGGTTGTGGCTACCTTATGAAGAATCACCAGGACTAGCAATGTCTAGGGCATTCGGAGACTACTGCGTCAAGGATTTTGGACTTATTTCCGAGCCTGAAGTTACTCACAGAAACATAACAAGCAGAGATCAATTTGTTGTGCTAGCAACTGATGGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

305

Amino Acids

33.86

Weight (kDa)

5.48

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	87 - 305	1.4e-30	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	258, 542
AciI	CCGC	4 cut(s)	347, 488, 540, 647
AclWI	GGATC	3 cut(s)	293, 338, 392
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	174, 873
AfaI	GTAC	2 cut(s)	544, 622
AgsI	TTSAA	3 cut(s)	52, 409, 673
AjnI	CCWGG	2 cut(s)	225, 784
AloI	GAACNNNNNNTCC	2 cut(s)	52, 84
AluBI	AGCT	6 cut(s)	98, 383, 505, 611, 642, 658
AluI	AGCT	6 cut(s)	98, 383, 505, 611, 642, 658
Alw26I	GTCTC	4 cut(s)	330, 368, 557, 807
AlwI	GGATC	3 cut(s)	293, 338, 392
Ama87I	CYCGRG	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	98, 234
ApoI	RAATTY	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	4 cut(s)	547, 584, 611, 774
AsuNHI	GCTAGC	1 cut(s)	898
AvaI	CYCGRG	1 cut(s)	606
AxyI	CCTNAGG	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BanI	GGYRCC	2 cut(s)	258, 542
BbvI	GCAGC	2 cut(s)	85, 221
BccI	CCATC	4 cut(s)	164, 287, 629, 902
BciT130I	CCWGG	2 cut(s)	227, 786
BclI	TGATCA	2 cut(s)	442, 496
BcoDI	GTCTC	4 cut(s)	330, 368, 557, 807
BfaI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	5 cut(s)	99, 235, 347, 489, 648
BlsI	GCNGC	5 cut(s)	100, 236, 348, 490, 649
Bme1390I	CCNGG	2 cut(s)	227, 786
BmeT110I	CYCGRG	1 cut(s)	606
BmiI	GGNNCC	3 cut(s)	260, 426, 544
BmrFI	CCNGG	2 cut(s)	227, 786
BmtI	GCTAGC	1 cut(s)	902
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	371, 553
Bse21I	CCTNAGG	1 cut(s)	687
Bse3DI	GCAATG	2 cut(s)	114, 801
BseBI	CCWGG	2 cut(s)	227, 786
BseGI	GGATG	2 cut(s)	14, 80
BseMI	GCAATG	2 cut(s)	114, 801
BseMII	CTCAG	2 cut(s)	678, 687
BseNI	ACTGG	2 cut(s)	371, 553
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	85, 221
BshNI	GGYRCC	2 cut(s)	258, 542
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	4 cut(s)	330, 368, 557, 807
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
BspACI	CCGC	4 cut(s)	347, 488, 540, 647
BspCNI	CTCAG	2 cut(s)	679, 688
BspLI	GGNNCC	3 cut(s)	260, 426, 544
BspMAI	CTGCAG	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	3 cut(s)	293, 338, 392
BspT107I	GGYRCC	2 cut(s)	258, 542
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	114, 801
BsrI	ACTGG	2 cut(s)	371, 553
BssMI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
Bst2UI	CCWGG	2 cut(s)	227, 786
Bst4CI	ACNGT	2 cut(s)	160, 664
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	2 cut(s)	687, 696
BstF5I	GGATG	2 cut(s)	14, 80
BstKTI	GATC	9 cut(s)	41, 288, 333, 400, 445, 499, 517, 577, 886
BstMAI	GTCTC	4 cut(s)	330, 368, 557, 807
BstMBI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 119, 207
BstNI	CCWGG	2 cut(s)	227, 786
BstSCI	CCNGG	2 cut(s)	225, 784
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	85, 221
BstX2I	RGATCY	2 cut(s)	285, 397
BstYI	RGATCY	2 cut(s)	285, 397
Bsu36I	CCTNAGG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	14, 80
BtsIMutI	CAGTG	2 cut(s)	31, 546
Cac8I	GCNNGC	1 cut(s)	900
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	543, 621
CviAII	CATG	2 cut(s)	19, 299
CviQI	GTAC	2 cut(s)	543, 621
DdeI	CTNAG	2 cut(s)	687, 696
DpnI	GATC	9 cut(s)	40, 287, 332, 399, 444, 498, 516, 576, 885
DpnII	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
Eco31I	GGTCTC	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	174, 873
Eco81I	CCTNAGG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	225, 784
FaeI	CATG	2 cut(s)	22, 302
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	18, 298
FauNDI	CATATG	1 cut(s)	458
FbaI	TGATCA	2 cut(s)	442, 496
Fnu4HI	GCNGC	5 cut(s)	99, 235, 347, 489, 648
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	99, 235, 347, 489, 648
FspBI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
GluI	GCNGC	5 cut(s)	99, 235, 347, 489, 648
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	811
Hin1II	CATG	2 cut(s)	22, 302
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	219, 602, 779
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	547, 584, 611, 774
Hpy166II	GTNNAC	2 cut(s)	29, 223
Hpy188I	TCNGA	6 cut(s)	146, 335, 447, 566, 812, 847
Hpy188III	TCNNGA	5 cut(s)	72, 153, 401, 500, 606
Hpy8I	GTNNAC	2 cut(s)	29, 223
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	160, 664
HpyCH4V	TGCA	3 cut(s)	35, 101, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 119, 207
HpyF3I	CTNAG	2 cut(s)	687, 696
Hsp92II	CATG	2 cut(s)	22, 302
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	2 cut(s)	442, 496
Kzo9I	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
Lsp1109I	GCAGC	2 cut(s)	85, 221
MaeI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
MaeIII	GTNAC	2 cut(s)	362, 856
MalI	GATC	9 cut(s)	40, 287, 332, 399, 444, 498, 516, 576, 885
MboI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
MboII	GAAGA	5 cut(s)	64, 73, 136, 644, 788
MflI	RGATCY	2 cut(s)	285, 397
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	5 cut(s)	181, 251, 526, 679, 887
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	97, 112, 200, 241, 361, 441, 682, 685
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	227, 786
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	2 cut(s)	227, 786
MwoI	GCNNNNNNNGC	3 cut(s)	104, 119, 207
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	2 cut(s)	22, 302
NlaIV	GGNNCC	3 cut(s)	260, 426, 544
PaeR7I	CTCGAG	1 cut(s)	606
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	602, 779
PkrI	GCNGC	5 cut(s)	100, 236, 348, 490, 649
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	225, 784
PspGI	CCWGG	2 cut(s)	225, 784
PspN4I	GGNNCC	3 cut(s)	260, 426, 544
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	285, 397
RsaI	GTAC	2 cut(s)	544, 622
RsaNI	GTAC	2 cut(s)	543, 621
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	5 cut(s)	99, 235, 347, 489, 648
Sau3AI	GATC	9 cut(s)	38, 285, 330, 397, 442, 496, 514, 574, 883
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	227, 786
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	606
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	506, 606
SmoI	CTYRAG	2 cut(s)	506, 606
Sse9I	AATT	5 cut(s)	181, 251, 526, 679, 887
SsiI	CCGC	4 cut(s)	347, 488, 540, 647
SspMI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899
StyD4I	CCNGG	2 cut(s)	225, 784
TaaI	ACNGT	2 cut(s)	160, 664
TaqI	TCGA	1 cut(s)	607
TasI	AATT	5 cut(s)	181, 251, 526, 679, 887
TauI	GCSGC	3 cut(s)	349, 491, 650
TfiI	GAWTC	2 cut(s)	602, 779
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	31, 553
TseI	GCWGC	2 cut(s)	98, 234
TspDTI	ATGAA	3 cut(s)	743, 756, 789
TspRI	CASTG	2 cut(s)	31, 553
XapI	RAATTY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	606
XspI	CTAG	6 cut(s)	44, 380, 395, 791, 801, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.