Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

43691886 .. 43693483

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCAAAGGAGGCGAAGAAAAATGACTTGATACTCCGAACTTCTGGAACTGTCAATGTTGATGGCTCAAATAATTTGGCTTCAGTTTTTAGCAAGAGAGGCAACAAAGGAGTCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGCCAACAAGACATGATGTTTTGTGGGATCTTTGATGGGCATGGACAATGGGGACATTTTGTGGCGAAAAGGATCAGAGAAACAATGCCGCCCTCGTTGTTGTGTAATTGGCAAGAGACACTAGCTCAAACTTCACTAGATCCAGACTTCAAAGAGTTGGACTTGGAACCGGATAAAAAGTATGATCAGAGGTTTAGCATATGGAAGCACTCCTATATAAAAACTTGTGCGGCTGTTGATCAAGAGCTTGAGCAAGATCGCAAAATCAATTCCTTTTACAGCGGTACCACTGGTCTCACCATTGTCAGACAGGGTGATCTTATTGTCATAGCAAATGTTGGTGATTCTCGAGCTGTTTTGGGTACAACTTTAGAAGATGGAAGCTTGGCGGCAGTTCAGCTTACTGTTGATTTCAAGCCCAATTTACCTGAGGAGGCTGAGAGAATAACTCAAAGAAATGGGAGAGTTTTCAGTTTAGATGATGAAACAGGAGTTCATAGGTTGTGGCTACCTTATGAGGAATCACCAGGACTAGCAATGTCTAGGGCATTCGGAGACTACTGCGTCAAGGATTTTGGACTTATTTCCGAGCCTGAAGTTACTCACAGAAACATAACAAGCAGAGATCAATTTGTTGTGCTAGCAACTGATGGGGTATGGGATGTGATTTCGAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAAAAGTGTGCCAAGCGACTGGTGGAATGTGCAGCTGCTGCATGGAGGAAGAAGAGGAGGGGTTATGCAATGGATGACATCTCCGCTATTTGCCTCTTCTTTCACTCTTCCTCCTTGTCTCAGCAAGTTCACCCCATTAGTGCACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

5.31

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	41 - 301	2.4e-41	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	713
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	150, 434
AciI	CCGC	5 cut(s)	239, 380, 432, 539, 948
AclWI	GGATC	3 cut(s)	185, 230, 284
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	66, 765
AfaI	GTAC	2 cut(s)	436, 514
AgsI	TTSAA	3 cut(s)	301, 565, 852
AjnI	CCWGG	2 cut(s)	117, 676
AluBI	AGCT	6 cut(s)	275, 397, 503, 534, 550, 899
AluI	AGCT	6 cut(s)	275, 397, 503, 534, 550, 899
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	4 cut(s)	260, 449, 699, 987
Alw44I	GTGCAC	1 cut(s)	1005
AlwI	GGATC	3 cut(s)	185, 230, 284
AlwNI	CAGNNNCTG	1 cut(s)	902
Ama87I	CYCGRG	1 cut(s)	498
ApaLI	GTGCAC	1 cut(s)	1005
ApeKI	GCWGC	4 cut(s)	126, 896, 899, 902
ApoI	RAATTY	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	434
AsuHPI	GGTGA	5 cut(s)	439, 476, 503, 666, 986
AsuII	TTCGAA	1 cut(s)	821
AsuNHI	GCTAGC	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	498
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	1009
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BanI	GGYRCC	2 cut(s)	150, 434
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	4 cut(s)	113, 886, 889, 908
BccI	CCATC	4 cut(s)	56, 179, 521, 794
BciT130I	CCWGG	2 cut(s)	119, 678
BclI	TGATCA	2 cut(s)	334, 388
BcoDI	GTCTC	4 cut(s)	260, 449, 699, 987
BfaI	CTAG	5 cut(s)	272, 287, 683, 693, 791
BisI	GCNGC	7 cut(s)	127, 239, 381, 540, 897, 900, 903
BlsI	GCNGC	7 cut(s)	128, 240, 382, 541, 898, 901, 904
Bme1390I	CCNGG	2 cut(s)	119, 678
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	3 cut(s)	152, 318, 436
BmrFI	CCNGG	2 cut(s)	119, 678
BmtI	GCTAGC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
Bpu14I	TTCGAA	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	959, 989
Bse1I	ACTGG	2 cut(s)	445, 888
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	693, 939
BseBI	CCWGG	2 cut(s)	119, 678
BseGI	GGATG	2 cut(s)	817, 943
BseMI	GCAATG	2 cut(s)	693, 939
BseMII	CTCAG	3 cut(s)	570, 579, 998
BseNI	ACTGG	2 cut(s)	445, 888
BseRI	GAGGAG	2 cut(s)	596, 934
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	4 cut(s)	113, 886, 889, 908
BsgI	GTGCAG	1 cut(s)	915
BshNI	GGYRCC	2 cut(s)	150, 434
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	216
BsmAI	GTCTC	4 cut(s)	260, 449, 699, 987
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	698
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	1009
Bsp143I	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
BspACI	CCGC	5 cut(s)	239, 380, 432, 539, 948
BspCNI	CTCAG	3 cut(s)	571, 580, 997
BspLI	GGNNCC	3 cut(s)	152, 318, 436
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	185, 230, 284
BspT104I	TTCGAA	1 cut(s)	821
BspT107I	GGYRCC	2 cut(s)	150, 434
BspTNI	GGTCTC	1 cut(s)	449
BsrDI	GCAATG	2 cut(s)	693, 939
BsrI	ACTGG	2 cut(s)	445, 888
BssMI	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
Bst2UI	CCWGG	2 cut(s)	119, 678
Bst4CI	ACNGT	2 cut(s)	52, 556
Bst6I	CTCTTC	3 cut(s)	911, 965, 976
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	3 cut(s)	579, 588, 984
BstF5I	GGATG	2 cut(s)	817, 943
BstKTI	GATC	8 cut(s)	180, 225, 292, 337, 391, 409, 469, 778
BstMAI	GTCTC	4 cut(s)	260, 449, 699, 987
BstMBI	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 99, 902
BstNI	CCWGG	2 cut(s)	119, 678
BstSCI	CCNGG	2 cut(s)	117, 676
BstSLI	GKGCMC	1 cut(s)	1009
BstV1I	GCAGC	4 cut(s)	113, 886, 889, 908
BstX2I	RGATCY	2 cut(s)	177, 289
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstYI	RGATCY	2 cut(s)	177, 289
Bsu36I	CCTNAGG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	817, 943
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	438, 840
Cac8I	GCNNGC	1 cut(s)	792
CaiI	CAGNNNCTG	1 cut(s)	902
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	435, 513
CviAII	CATG	3 cut(s)	163, 191, 906
CviQI	GTAC	2 cut(s)	435, 513
DdeI	CTNAG	3 cut(s)	579, 588, 984
DpnI	GATC	8 cut(s)	179, 224, 291, 336, 390, 408, 468, 777
DpnII	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
DrdI	GACNNNNNNGTC	1 cut(s)	713
DseDI	GACNNNNNNGTC	1 cut(s)	713
Eam1104I	CTCTTC	3 cut(s)	911, 965, 976
EarI	CTCTTC	3 cut(s)	911, 965, 976
Eco31I	GGTCTC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	66, 765
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	117, 676
FaeI	CATG	3 cut(s)	166, 194, 909
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	162, 190, 905
FauNDI	CATATG	1 cut(s)	350
FbaI	TGATCA	2 cut(s)	334, 388
Fnu4HI	GCNGC	7 cut(s)	127, 239, 381, 540, 897, 900, 903
FokI	GGATG	2 cut(s)	824, 950
Fsp4HI	GCNGC	7 cut(s)	127, 239, 381, 540, 897, 900, 903
FspBI	CTAG	5 cut(s)	272, 287, 683, 693, 791
GluI	GCNGC	7 cut(s)	127, 239, 381, 540, 897, 900, 903
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	703
Hin1II	CATG	3 cut(s)	166, 194, 909
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	3 cut(s)	111, 494, 671
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	5 cut(s)	439, 476, 503, 666, 986
Hpy166II	GTNNAC	3 cut(s)	115, 994, 1007
Hpy188I	TCNGA	6 cut(s)	38, 227, 339, 458, 704, 739
Hpy188III	TCNNGA	4 cut(s)	45, 293, 392, 498
Hpy8I	GTNNAC	3 cut(s)	115, 994, 1007
HpyCH4III	ACNGT	2 cut(s)	52, 556
HpyCH4V	TGCA	5 cut(s)	129, 896, 905, 932, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 99, 902
HpyF3I	CTNAG	3 cut(s)	579, 588, 984
Hsp92II	CATG	3 cut(s)	166, 194, 909
KpnI	GGTACC	1 cut(s)	438
Ksp22I	TGATCA	2 cut(s)	334, 388
Kzo9I	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
Lsp1109I	GCAGC	4 cut(s)	113, 886, 889, 908
MaeI	CTAG	5 cut(s)	272, 287, 683, 693, 791
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	8 cut(s)	179, 224, 291, 336, 390, 408, 468, 777
MboI	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
MboII	GAAGA	7 cut(s)	28, 536, 839, 925, 928, 952, 963
MflI	RGATCY	2 cut(s)	177, 289
MhlI	GDGCHC	1 cut(s)	1009
MluCI	AATT	7 cut(s)	73, 143, 256, 418, 571, 779, 840
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	288
MseI	TTAA	1 cut(s)	1011
MspA1I	CMGCKG	2 cut(s)	432, 899
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	119, 678
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	2 cut(s)	119, 678
MwoI	GCNNNNNNNGC	3 cut(s)	11, 99, 902
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	3 cut(s)	166, 194, 909
NlaIV	GGNNCC	3 cut(s)	152, 318, 436
NspV	TTCGAA	1 cut(s)	821
PaeR7I	CTCGAG	1 cut(s)	498
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	494, 671
PkrI	GCNGC	7 cut(s)	128, 240, 382, 541, 898, 901, 904
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	117, 676
PspGI	CCWGG	2 cut(s)	117, 676
PspN4I	GGNNCC	3 cut(s)	152, 318, 436
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	2 cut(s)	177, 289
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	2 cut(s)	436, 514
RsaNI	GTAC	2 cut(s)	435, 513
SaqAI	TTAA	1 cut(s)	1011
SatI	GCNGC	7 cut(s)	127, 239, 381, 540, 897, 900, 903
Sau3AI	GATC	8 cut(s)	177, 222, 289, 334, 388, 406, 466, 775
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	119, 678
SduI	GDGCHC	1 cut(s)	1009
Sfr274I	CTCGAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	398, 498
SmoI	CTYRAG	2 cut(s)	398, 498
Sse9I	AATT	7 cut(s)	73, 143, 256, 418, 571, 779, 840
SsiI	CCGC	5 cut(s)	239, 380, 432, 539, 948
SspMI	CTAG	5 cut(s)	272, 287, 683, 693, 791
StyD4I	CCNGG	2 cut(s)	117, 676
TaaI	ACNGT	2 cut(s)	52, 556
TaqI	TCGA	2 cut(s)	499, 821
TasI	AATT	7 cut(s)	73, 143, 256, 418, 571, 779, 840
TauI	GCSGC	3 cut(s)	241, 383, 542
TfiI	GAWTC	2 cut(s)	494, 671
Tru1I	TTAA	1 cut(s)	1011
Tru9I	TTAA	1 cut(s)	1011
TscAI	CASTG	2 cut(s)	445, 840
TseI	GCWGC	4 cut(s)	126, 896, 899, 902
TspDTI	ATGAA	2 cut(s)	635, 648
TspRI	CASTG	2 cut(s)	445, 840
VneI	GTGCAC	1 cut(s)	1005
XapI	RAATTY	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	5 cut(s)	272, 287, 683, 693, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.