Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

44265 .. 46997

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ctgttttccggcaactgcgtcaggttccagaaggtttctagcttagtctccgattttgtggtccaagactcccaacttggctggaatatcaagattttgaatctacaacttggtcaattgggtattggtggacttgcaagatcactagcattgaagaaggggaagaatagttctggatgtaaatgtaatgtaagagaagctgcagaggcaatggcaaaggaggcgaagaaaaatgacttgatactccgaacttctggaactgtcaatattgatggctcaaataatttggcttcagtttttagcaagagaggcaacaaaggagtcaaccaggactgctgctttgtgtgggaggaatttgggtgccaacaagatatgatgttttgtgggatctttgatgggcatggacaatggggacattttgtggcgaaaaggatcagagacacaatgccgacctcgttgttgtgtaactggcaagagacactagctcaaacttcactagatcctgacttgaaagagttggacttggaaacggataaaaagtatgatcagaggtttgacatatggaagcactcctatataaaaacttgtgcggctgttgatcaagagcttgagcaagatcgcaaaatcaattccttttacagcggtaccactggtctcaccattgtcagacagggtgatcttattgtcatagcaaatgttggtgattctcgagctgttttgggtacaactttagaagatggaagcttggcggcagttcagcttactgttgatttcaagcccaatttacctgaggaggctgagagaataactcaaagaaatgggagagttttcagtttagatgatgaaacaggagttcataggttgtggctaccttatgaagaatcaccaggactagcaatgtctagggcattcggagactactgcgtcaaggattttggacttatttccgagcctgaagttactcacagaaacataacaagcagagatcaatttgttgtgctagcaactgatggggtatgggatgtgatttcgaacgaagaagcagtggaaattgtgggttcaacagcagagagggaaaagtgtgccaagcgactggtggaatgtgcagctgcagcatggaggaagaagaggaggggttatgcaatggatgacatttccgctatttgcctcttctttcactcttcctctttgtctcagcaagttcaccccattagtacacttaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

408

Amino Acids

45.37

Weight (kDa)

5.77

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	923
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	360, 644
AciI	CCGC	4 cut(s)	590, 642, 749, 1158
AclWI	GGATC	3 cut(s)	395, 440, 494
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	276, 975
AfaI	GTAC	3 cut(s)	646, 724, 1216
AgsI	TTSAA	5 cut(s)	100, 154, 511, 775, 1062
AjnI	CCWGG	2 cut(s)	327, 886
AloI	GAACNNNNNNTCC	2 cut(s)	154, 186
AluBI	AGCT	8 cut(s)	42, 200, 485, 607, 713, 744, 760, 1109
AluI	AGCT	8 cut(s)	42, 200, 485, 607, 713, 744, 760, 1109
Alw26I	GTCTC	6 cut(s)	52, 432, 470, 659, 909, 1197
AlwI	GGATC	3 cut(s)	395, 440, 494
Ama87I	CYCGRG	1 cut(s)	708
ApeKI	GCWGC	5 cut(s)	200, 336, 1106, 1109, 1112
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	5 cut(s)	649, 686, 713, 876, 1196
AsuII	TTCGAA	1 cut(s)	1031
AsuNHI	GCTAGC	1 cut(s)	1000
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	789
BaeI	ACNNNNGTAYC	2 cut(s)	628, 661
BanI	GGYRCC	2 cut(s)	360, 644
BbvI	GCAGC	5 cut(s)	187, 323, 1096, 1118, 1124
BccI	CCATC	4 cut(s)	266, 389, 731, 1004
BciT130I	CCWGG	2 cut(s)	329, 888
BclI	TGATCA	2 cut(s)	544, 598
BcoDI	GTCTC	6 cut(s)	52, 432, 470, 659, 909, 1197
BfaI	CTAG	7 cut(s)	39, 146, 482, 497, 893, 903, 1001
BfmI	CTRYAG	2 cut(s)	201, 1110
BisI	GCNGC	7 cut(s)	201, 337, 591, 750, 1107, 1110, 1113
BlsI	GCNGC	7 cut(s)	202, 338, 592, 751, 1108, 1111, 1114
Bme1390I	CCNGG	2 cut(s)	329, 888
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	26, 362, 646
BmrFI	CCNGG	2 cut(s)	329, 888
BmtI	GCTAGC	1 cut(s)	1004
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
Bpu14I	TTCGAA	1 cut(s)	1031
BpuEI	CTTGAG	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	473, 655, 1098
Bse21I	CCTNAGG	1 cut(s)	789
Bse3DI	GCAATG	3 cut(s)	216, 903, 1149
BseBI	CCWGG	2 cut(s)	329, 888
BseGI	GGATG	3 cut(s)	182, 1027, 1153
BseMI	GCAATG	3 cut(s)	216, 903, 1149
BseMII	CTCAG	3 cut(s)	780, 789, 1208
BseNI	ACTGG	3 cut(s)	473, 655, 1098
BseRI	GAGGAG	2 cut(s)	806, 1144
BseXI	GCAGC	5 cut(s)	187, 323, 1096, 1118, 1124
BsgI	GTGCAG	1 cut(s)	1125
BshNI	GGYRCC	2 cut(s)	360, 644
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	426
BsmAI	GTCTC	6 cut(s)	52, 432, 470, 659, 909, 1197
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	908
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	708
Bsp119I	TTCGAA	1 cut(s)	1031
Bsp143I	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
BspACI	CCGC	4 cut(s)	590, 642, 749, 1158
BspCNI	CTCAG	3 cut(s)	781, 790, 1207
BspLI	GGNNCC	3 cut(s)	26, 362, 646
BspMAI	CTGCAG	2 cut(s)	205, 1114
BspOI	GCTAGC	1 cut(s)	1004
BspPI	GGATC	3 cut(s)	395, 440, 494
BspT104I	TTCGAA	1 cut(s)	1031
BspT107I	GGYRCC	2 cut(s)	360, 644
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	3 cut(s)	216, 903, 1149
BsrI	ACTGG	3 cut(s)	473, 655, 1098
BssMI	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
Bst2UI	CCWGG	2 cut(s)	329, 888
Bst4CI	ACNGT	2 cut(s)	262, 766
Bst6I	CTCTTC	3 cut(s)	1121, 1175, 1186
BstBI	TTCGAA	1 cut(s)	1031
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	4 cut(s)	43, 789, 798, 1194
BstF5I	GGATG	3 cut(s)	182, 1027, 1153
BstKTI	GATC	9 cut(s)	143, 390, 435, 502, 547, 601, 619, 679, 988
BstMAI	GTCTC	6 cut(s)	52, 432, 470, 659, 909, 1197
BstMBI	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 221, 309, 1112
BstNI	CCWGG	2 cut(s)	329, 888
BstSCI	CCNGG	2 cut(s)	327, 886
BstSFI	CTRYAG	2 cut(s)	201, 1110
BstV1I	GCAGC	5 cut(s)	187, 323, 1096, 1118, 1124
BstX2I	RGATCY	2 cut(s)	387, 499
BstXI	CCANNNNNNTGG	1 cut(s)	1093
BstYI	RGATCY	2 cut(s)	387, 499
Bsu36I	CCTNAGG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	182, 1027, 1153
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	2 cut(s)	648, 1050
Cac8I	GCNNGC	1 cut(s)	1002
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	2 cut(s)	7, 913
Csp6I	GTAC	3 cut(s)	645, 723, 1215
CviAII	CATG	2 cut(s)	401, 1116
CviQI	GTAC	3 cut(s)	645, 723, 1215
DdeI	CTNAG	4 cut(s)	43, 789, 798, 1194
DpnI	GATC	9 cut(s)	142, 389, 434, 501, 546, 600, 618, 678, 987
DpnII	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
DrdI	GACNNNNNNGTC	1 cut(s)	923
DseDI	GACNNNNNNGTC	1 cut(s)	923
Eam1104I	CTCTTC	3 cut(s)	1121, 1175, 1186
EarI	CTCTTC	3 cut(s)	1121, 1175, 1186
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	276, 975
Eco81I	CCTNAGG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	327, 886
FaeI	CATG	2 cut(s)	404, 1119
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	2 cut(s)	400, 1115
FauNDI	CATATG	1 cut(s)	560
FbaI	TGATCA	2 cut(s)	544, 598
Fnu4HI	GCNGC	7 cut(s)	201, 337, 591, 750, 1107, 1110, 1113
FokI	GGATG	3 cut(s)	189, 1034, 1160
Fsp4HI	GCNGC	7 cut(s)	201, 337, 591, 750, 1107, 1110, 1113
FspBI	CTAG	7 cut(s)	39, 146, 482, 497, 893, 903, 1001
GluI	GCNGC	7 cut(s)	201, 337, 591, 750, 1107, 1110, 1113
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	7, 913
Hin1II	CATG	2 cut(s)	404, 1119
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	742
HinfI	GANTC	5 cut(s)	68, 100, 321, 704, 881
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	5 cut(s)	649, 686, 713, 876, 1196
Hpy166II	GTNNAC	4 cut(s)	131, 325, 1204, 1217
Hpy188I	TCNGA	7 cut(s)	52, 248, 437, 549, 668, 914, 949
Hpy188III	TCNNGA	7 cut(s)	28, 91, 174, 255, 503, 602, 708
Hpy8I	GTNNAC	4 cut(s)	131, 325, 1204, 1217
HpyAV	CCTTC	2 cut(s)	25, 151
HpyCH4III	ACNGT	2 cut(s)	262, 766
HpyCH4V	TGCA	5 cut(s)	137, 203, 1106, 1112, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 221, 309, 1112
HpyF3I	CTNAG	4 cut(s)	43, 789, 798, 1194
Hsp92II	CATG	2 cut(s)	404, 1119
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	2 cut(s)	544, 598
Kzo9I	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
Lsp1109I	GCAGC	5 cut(s)	187, 323, 1096, 1118, 1124
MaeI	CTAG	7 cut(s)	39, 146, 482, 497, 893, 903, 1001
MaeIII	GTNAC	2 cut(s)	464, 958
MalI	GATC	9 cut(s)	142, 389, 434, 501, 546, 600, 618, 678, 987
MboI	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	2 cut(s)	387, 499
MluCI	AATT	7 cut(s)	116, 283, 353, 628, 781, 989, 1050
MlyI	GAGTC	2 cut(s)	62, 330
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	1 cut(s)	1221
MspA1I	CMGCKG	2 cut(s)	642, 1109
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	329, 888
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	329, 888
MwoI	GCNNNNNNNGC	4 cut(s)	206, 221, 309, 1112
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
NheI	GCTAGC	1 cut(s)	1000
NlaIII	CATG	2 cut(s)	404, 1119
NlaIV	GGNNCC	3 cut(s)	26, 362, 646
NspV	TTCGAA	1 cut(s)	1031
PaeR7I	CTCGAG	1 cut(s)	708
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	100, 704, 881
PkrI	GCNGC	7 cut(s)	202, 338, 592, 751, 1108, 1111, 1114
PleI	GAGTC	2 cut(s)	62, 329
PpsI	GAGTC	2 cut(s)	62, 329
Psp6I	CCWGG	2 cut(s)	327, 886
PspGI	CCWGG	2 cut(s)	327, 886
PspN4I	GGNNCC	3 cut(s)	26, 362, 646
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	2 cut(s)	205, 1114
PsuI	RGATCY	2 cut(s)	387, 499
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	3 cut(s)	646, 724, 1216
RsaNI	GTAC	3 cut(s)	645, 723, 1215
SaqAI	TTAA	1 cut(s)	1221
SatI	GCNGC	7 cut(s)	201, 337, 591, 750, 1107, 1110, 1113
Sau3AI	GATC	9 cut(s)	140, 387, 432, 499, 544, 598, 616, 676, 985
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	62, 330
ScrFI	CCNGG	2 cut(s)	329, 888
SfcI	CTRYAG	2 cut(s)	201, 1110
Sfr274I	CTCGAG	1 cut(s)	708
SfuI	TTCGAA	1 cut(s)	1031
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	708
SmlI	CTYRAG	2 cut(s)	608, 708
SmoI	CTYRAG	2 cut(s)	608, 708
Sse9I	AATT	7 cut(s)	116, 283, 353, 628, 781, 989, 1050
SsiI	CCGC	4 cut(s)	590, 642, 749, 1158
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	7 cut(s)	39, 146, 482, 497, 893, 903, 1001
StyD4I	CCNGG	2 cut(s)	327, 886
TaaI	ACNGT	2 cut(s)	262, 766
TaqI	TCGA	2 cut(s)	709, 1031
TasI	AATT	7 cut(s)	116, 283, 353, 628, 781, 989, 1050
TatI	WGTACW	1 cut(s)	1214
TauI	GCSGC	2 cut(s)	593, 752
TfiI	GAWTC	3 cut(s)	100, 704, 881
Tru1I	TTAA	1 cut(s)	1221
Tru9I	TTAA	1 cut(s)	1221
TscAI	CASTG	2 cut(s)	655, 1050
TseI	GCWGC	5 cut(s)	200, 336, 1106, 1109, 1112
TspDTI	ATGAA	3 cut(s)	845, 858, 891
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	655, 1050
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093
XhoI	CTCGAG	1 cut(s)	708
XspI	CTAG	7 cut(s)	39, 146, 482, 497, 893, 903, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.