Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

32935969 .. 32936361

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAAAATAATAACAGAATTAGAAAGATAATTGGAAGCAACCGCCTCTCGACGGCGACGGAGCTGAAGCCGGAGATTGTGTTGGCATACTTTTTCGCCGTCACCCGGCTGTTTACAAAGGGGTTTCTTGAGTCTTATGCGATCCCACCTGAGATTATCACGCCGGCAGAACCTAACCCGTTCACGCGGACAGCAATCCAACTAGACCCCGTTGTCGTCCCTAATGTGGCGCCGCCATCGTTCAGATTACTACCCATGGCTGGGAAAAAATTGTCATTTAGGCCTGGAAAGAGGACAGTCATTTTGCAGTGGAATGTAACTGCAATTTACCAAGAATTTTCCAAGCCAGATAGTATTGTAGTAAACCTAACCGAATTGGTAGTCAGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

130

Amino Acids

14.63

Weight (kDa)

10.22

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	1 cut(s)	187
AciI	CCGC	3 cut(s)	43, 187, 233
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	230
AfiI	CCNNNNNNNGG	5 cut(s)	52, 105, 226, 260, 261
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	3 cut(s)	286, 318, 366
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	229
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	69, 83
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	106, 285
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	106, 285
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 105, 226, 260, 261
Bse118I	RCCGGY	2 cut(s)	163, 387
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	5 cut(s)	52, 105, 226, 260, 261
BseMII	CTCAG	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	71, 106, 164, 388
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	5 cut(s)	52, 105, 226, 260, 261
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	43, 187, 233
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	2 cut(s)	163, 387
BssAI	RCCGGY	2 cut(s)	163, 387
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	104, 283
BstUI	CGCG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	2 cut(s)	163, 387
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	64, 70, 109, 260, 283, 346, 387
CviKI_1	RGCY	7 cut(s)	64, 70, 109, 260, 283, 346, 387
DdeI	CTNAG	1 cut(s)	150
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	255
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	88, 138, 257
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	4 cut(s)	71, 106, 164, 388
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	4 cut(s)	71, 106, 164, 388
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	114, 183, 364
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	49, 128
Hpy8I	GTNNAC	3 cut(s)	114, 183, 364
Hpy99I	CGWCG	2 cut(s)	55, 61
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	307, 323
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	230
KasI	GGCGCC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	8 cut(s)	84, 119, 162, 177, 246, 270, 297, 360
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	100, 316
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MluCI	AATT	6 cut(s)	18, 30, 269, 324, 335, 374
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	56, 285
MroNI	GCCGGC	1 cut(s)	163
MspI	CCGG	4 cut(s)	71, 106, 164, 388
MspR9I	CCNGG	2 cut(s)	106, 285
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	187
NaeI	GCCGGC	1 cut(s)	165
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	141
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	283
PdiI	GCCGGC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	106, 285
SetI	ASST	4 cut(s)	66, 151, 175, 369
SfoI	GGCGCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	6 cut(s)	18, 30, 269, 324, 335, 374
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	3 cut(s)	43, 187, 233
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	104, 283
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	50
TasI	AATT	6 cut(s)	18, 30, 269, 324, 335, 374
TauI	GCSGC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.